Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm JAK1 3716 hgsc.bcm.edu hg19 1 65344759 65344759 + Missense_Mutation SNP C C T novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . JAK1 NM_002227 exon4 c.G278A p.R93H ATGGTGCGATTTG . 45.0 25.0 53.0 0.0 . 209 . . . none . . PASS Atlas-SNP SNX7 51375 hgsc.bcm.edu hg19 1 99150445 99150445 + Missense_Mutation SNP C C A novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . SNX7 NM_015976 exon2 c.C185A p.A62D AGGATGCCTCATT . 111.0 37.0 110.0 0.0 . 76 . . . none . . PASS Atlas-SNP SLC9C2 284525 hgsc.bcm.edu hg19 1 173505010 173505010 + Missense_Mutation SNP G G T novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 SLC9A11,rectum,carcinoma,0,1 . NM_178527 exon15 c.C1734A p.F578L TTCCAAGAAAGTT . 113.0 29.0 77.0 0.0 . . . . . none . . PASS Atlas-SNP OR13G1 441933 hgsc.bcm.edu hg19 1 247835611 247835611 + Missense_Mutation SNP C C G novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . OR13G1 NM_001005487 exon1 c.G733C p.V245L GGGTCACCACTGT . 122.0 32.0 122.0 0.0 . 78 . . . none . . PASS Atlas-SNP PIK3CA 5290 hgsc.bcm.edu hg19 3 178936091 178936091 + Missense_Mutation SNP G G A rs104886003 bycluster TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 PIK3CA_ENST00000263967,NS,carcinoma,0,1131 PIK3CA NM_006218 exon10 c.G1633A p.E545K ATCACTGAGCAGG . 68.0 4.0 92.0 0.0 . 8460 . . . weak . . PASS Atlas-SNP LARS 51520 hgsc.bcm.edu hg19 5 145533344 145533344 + Missense_Mutation SNP C C T novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . LARS NM_020117 exon12 c.G1183A p.D395N GGGAGTCGGAAGG . 67.0 31.0 35.0 0.0 . 100 . . . none . . PASS Atlas-SNP GRPEL2 134266 hgsc.bcm.edu hg19 5 148730749 148730749 + Silent SNP C C T novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . GRPEL2 NM_152407 exon4 c.C582T p.T194T TGGCACCGTGGCA . 105.0 37.0 150.0 0.0 . 18 . . . none . . PASS Atlas-SNP BCLAF1 9774 hgsc.bcm.edu hg19 6 136599912 136599912 + Missense_Mutation SNP G G T rs200334350 TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . BCLAF1 NM_014739 exon4 c.C107A p.S36Y GACCTAGAACTAA . 66.0 7.0 37.0 0.0 . 203 . . . weak . . PASS Atlas-SNP SAMD5 389432 hgsc.bcm.edu hg19 6 147830100 147830100 + Silent SNP G G A novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . SAMD5 NM_001030060 exon1 c.G36A p.A12A CAAAGCGCTGCAG . 55.0 12.0 73.0 0.0 . 4 . . . none . . PASS Atlas-SNP PKD1L1 168507 hgsc.bcm.edu hg19 7 47970797 47970797 + Missense_Mutation SNP G G A novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . PKD1L1 NM_138295 exon6 c.C641T p.T214M TCCATCGTGACAG . 85.0 27.0 110.0 0.0 . 328 . . . none . . PASS Atlas-SNP TPK1 27010 hgsc.bcm.edu hg19 7 144245631 144245631 + Missense_Mutation SNP C C A novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . TPK1 NM_022445 exon8 c.G566T p.G189V GGCTGTCCAACAG . 145.0 65.0 172.0 0.0 . 41 . . . none . . PASS Atlas-SNP MLL3 58508 hgsc.bcm.edu hg19 7 151845739 151845739 + Missense_Mutation SNP C C A novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 MLL3_ENST00000355193,NS,carcinoma,0,2 MLL3 NM_170606 exon52 c.G13273T p.D4425Y ACAGATCCAAGTC . 102.0 45.0 128.0 0.0 . 1564 . . . none . . PASS Atlas-SNP MYOM2 9172 hgsc.bcm.edu hg19 8 2044224 2044224 + Missense_Mutation SNP A A G novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . MYOM2 NM_003970 exon18 c.A2263G p.K755E CACCATAAAAACT . 73.0 23.0 74.0 0.0 . 251 . . . none . . PASS Atlas-SNP FAM110B 90362 hgsc.bcm.edu hg19 8 59059734 59059734 + Silent SNP C C T novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . FAM110B NM_147189 exon5 c.C945T p.S315S GATCAGCTCAGAC . 45.0 19.0 60.0 0.0 . 64 . . . none . . PASS Atlas-SNP CSPP1 79848 hgsc.bcm.edu hg19 8 68087587 68087587 + Missense_Mutation SNP C C A novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . CSPP1 NM_024790 exon24 c.C3010A p.H1004N GATCATCACACCT . 98.0 5.0 94.0 0.0 . 129 . . . none . . PASS Atlas-SNP CSMD3 114788 hgsc.bcm.edu hg19 8 113249531 113249531 + Nonsense_Mutation SNP G G T novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . CSMD3 NM_198123 exon67 c.C10515A p.Y3505X GAAATTGTAAGAG . 104.0 38.0 99.0 0.0 . 2325 . . . none . . PASS Atlas-SNP CSMD3 114788 hgsc.bcm.edu hg19 8 113249566 113249566 + Missense_Mutation SNP C C A novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . CSMD3 NM_198123 exon67 c.G10480T p.V3494L CAAATACATCATC . 80.0 25.0 82.0 0.0 . 2325 . . . none . . PASS Atlas-SNP DENND3 22898 hgsc.bcm.edu hg19 8 142186773 142186773 + Silent SNP C C T rs374490803 TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . DENND3 NM_014957 exon15 c.C2379T p.F793F AGTCTTCGAAGCC . 91.0 40.0 121.0 0.0 . 127 . . . weak . . PASS Atlas-SNP FAM83H 286077 hgsc.bcm.edu hg19 8 144809117 144809117 + Silent SNP G G C novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . FAM83H NM_198488 exon5 c.C2514G p.A838A GCTCTGGGCAGAG . 22.0 8.0 28.0 0.0 . 68 . . . none . . PASS Atlas-SNP SMARCA2 6595 hgsc.bcm.edu hg19 9 2110312 2110312 + Silent SNP C C T novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . SMARCA2 NM_139045 exon24 c.C3351T p.S1117S TGGATCCCAGTAT . 102.0 32.0 64.0 0.0 . 313 . . . none . . PASS Atlas-SNP SPATA31D1 389763 hgsc.bcm.edu hg19 9 84607771 84607771 + Missense_Mutation SNP G G T novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . . NM_001001670 exon4 c.G2386T p.D796Y GACAAGGATCTGA . 102.0 37.0 157.0 0.0 . . . . . none . . PASS Atlas-SNP SVEP1 79987 hgsc.bcm.edu hg19 9 113141740 113141740 + Missense_Mutation SNP T T C novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . SVEP1 NM_153366 exon44 c.A10295G p.Y3432C TATTGATAATGTA . 71.0 33.0 79.0 0.0 . 326 . . . none . . PASS Atlas-SNP OR1B1 347169 hgsc.bcm.edu hg19 9 125391500 125391500 + Silent SNP G G A novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . OR1B1 NM_001004450 exon1 c.C315T p.F105F ATAGAAGAAAAAG . 55.0 21.0 60.0 0.0 . 48 . . . none . . PASS Atlas-SNP OR13A1 79290 hgsc.bcm.edu hg19 10 45799786 45799786 + Missense_Mutation SNP C C T rs200530280 bycluster;alternate_allele TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 OR13A1,ear,carcinoma,0,1 OR13A1 NM_001004297 exon4 c.G85A p.E29K TGAACTCGGTTAC . 84.0 38.0 95.0 0.0 . 49 . . . alt C|0.999;A|0.001 . PASS Atlas-SNP PPFIBP2 8495 hgsc.bcm.edu hg19 11 7618800 7618800 + Missense_Mutation SNP C C G rs17851928 alternate_allele TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . PPFIBP2 NM_003621 exon5 c.C382G p.L128V AGTGTCCTCACAG . 19.0 9.0 33.0 0.0 . 87 . . . alt . . PASS Atlas-SNP TTC17 55761 hgsc.bcm.edu hg19 11 43380551 43380551 + Missense_Mutation SNP G G A novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . TTC17 NM_018259 exon1 c.G47A p.C16Y CGCCTTGCTCCGG . 20.0 10.0 25.0 0.0 . 112 . . . none . . PASS Atlas-SNP PICALM 8301 hgsc.bcm.edu hg19 11 85714416 85714416 + Missense_Mutation SNP C C A novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . PICALM NM_007166 exon9 c.G886T p.A296S TGCTTGCAGCTGT . 99.0 27.0 74.0 0.0 . 82 . . . none . . PASS Atlas-SNP SPATA13 221178 hgsc.bcm.edu hg19 13 24825881 24825881 + Missense_Mutation SNP C C A novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . SPATA13 NM_001166271 exon4 c.C2045A p.A682D TGCCTGCTCACCA . 118.0 49.0 117.0 0.0 . 92 . . . none . . PASS Atlas-SNP SHISA2 387914 hgsc.bcm.edu hg19 13 26620708 26620708 + Missense_Mutation SNP C C G novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . SHISA2 NM_001007538 exon2 c.G831C p.Q277H GGGGGACTGAATC . 85.0 30.0 87.0 0.0 . 43 . . . none . . PASS Atlas-SNP DENND4A 10260 hgsc.bcm.edu hg19 15 65983020 65983020 + Silent SNP C C T novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . DENND4A NM_001144823 exon23 c.G3909A p.V1303V AAGTCTCACTGGC . 100.0 29.0 133.0 0.0 . 217 . . . none . . PASS Atlas-SNP SIN3A 25942 hgsc.bcm.edu hg19 15 75692465 75692465 + Silent SNP C C T rs373830836 TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . SIN3A NM_001145358 exon12 c.G1770A p.S590S AGACCACGAAGGG . 87.0 32.0 86.0 0.0 . 152 . . . weak . . PASS Atlas-SNP CIITA 4261 hgsc.bcm.edu hg19 16 10992850 10992850 + Missense_Mutation SNP C C A novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . CIITA NM_000246 exon5 c.C427A p.Q143K AAAAGTCAGAAAA . 137.0 29.0 115.0 0.0 . 92 . . . none . . PASS Atlas-SNP ANKRD11 29123 hgsc.bcm.edu hg19 16 89349917 89349917 + Missense_Mutation SNP C C G novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . ANKRD11 NM_001256183 exon9 c.G3033C p.K1011N ATCCTTCTTCTCC . 122.0 69.0 187.0 0.0 . 195 . . . none . . PASS Atlas-SNP TP53 7157 hgsc.bcm.edu hg19 17 7574002 7574002 + Missense_Mutation SNP C C A rs375338359 alternate_allele TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 TP53_ENST00000269305,NS,malignant_melanoma,-1,10 TP53 NM_000546 exon10 c.G1025T p.R342L AGCTCTCGGAACA . 58.0 3.0 81.0 1.0 . 33396 . . . alt . . PASS Atlas-SNP KIAA1468 57614 hgsc.bcm.edu hg19 18 59888685 59888685 + Silent SNP C C T novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . KIAA1468 NM_020854 exon5 c.C813T p.N271N GAATAACTATAAG . 98.0 28.0 68.0 0.0 . 93 . . . none . . PASS Atlas-SNP RHPN2 85415 hgsc.bcm.edu hg19 19 33503622 33503622 + Missense_Mutation SNP G G C novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . RHPN2 NM_033103 exon5 c.C399G p.I133M TTCCAGGATAAAA . 54.0 24.0 50.0 0.0 . 107 . . . none . . PASS Atlas-SNP KIAA0355 9710 hgsc.bcm.edu hg19 19 34832921 34832921 + Silent SNP G G A novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . KIAA0355 NM_014686 exon10 c.G2082A p.L694L GTCACTGCCTGTG . 111.0 35.0 133.0 0.0 . 105 . . . none . . PASS Atlas-SNP IGFLR1 79713 hgsc.bcm.edu hg19 19 36230750 36230750 + Silent SNP G G C novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . IGFLR1 NM_024660 exon4 c.C582G p.A194A GGGGTCGGCTTTC . 159.0 66.0 197.0 0.0 . 28 . . . none . . PASS Atlas-SNP CNFN 84518 hgsc.bcm.edu hg19 19 42893120 42893120 + Missense_Mutation SNP A A G novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . CNFN NM_032488 exon2 c.T70C p.W24R TGTGCCAGTCACT . 37.0 22.0 50.0 0.0 . 5 . . . none . . PASS Atlas-SNP DMPK 1760 hgsc.bcm.edu hg19 19 46280763 46280763 + Missense_Mutation SNP G G A novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . DMPK NM_001081563 exon7 c.C998T p.T333I AGCCGTGTCTCCG . 76.0 31.0 82.0 0.0 . 74 . . . none . . PASS Atlas-SNP PRKCG 5582 hgsc.bcm.edu hg19 19 54385815 54385815 + Missense_Mutation SNP G G T novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . PRKCG NM_002739 exon1 c.G67T p.G23W AGAAAGGGGGCCC . 156.0 72.0 175.0 0.0 . 246 . . . none . . PASS Atlas-SNP KIR3DL3 115653 hgsc.bcm.edu hg19 19 55239373 55239373 + Missense_Mutation SNP G G A novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 KIR3DL3,colon,carcinoma,0,1 KIR3DL3 NM_153443 exon4 c.G652A p.V218I GTGGTCGTAGGTG . 146.0 65.0 181.0 0.0 . 46 . . . none . . PASS Atlas-SNP SAMHD1 25939 hgsc.bcm.edu hg19 20 35563508 35563508 + Missense_Mutation SNP G G C rs121434517 bycluster;alternate_allele TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . SAMHD1 NM_015474 exon4 c.C433G p.R145G TGTATCGAAGACG . 73.0 4.0 114.0 0.0 . 62 . . . alt . . PASS Atlas-SNP EIF1AX 1964 hgsc.bcm.edu hg19 X 20152121 20152121 + Missense_Mutation SNP C C A novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . EIF1AX NM_001412 exon4 c.G209T p.W70L TTTATCCAAACCT . 33.0 20.0 37.0 0.0 . 21 . . . none . . PASS Atlas-SNP GPR34 2857 hgsc.bcm.edu hg19 X 41555435 41555435 + Silent SNP T T A novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . GPR34 NM_001097579 exon3 c.T549A p.L183L TGCTCTTGGTGGA . 58.0 49.0 60.0 0.0 . 42 . . . none . . PASS Atlas-SNP BCORL1 63035 hgsc.bcm.edu hg19 X 129173153 129173154 + Frame_Shift_Ins INS - - CTGG novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . BCORL1 NM_021946 exon9 c.4514_4515insCTGG p.I1505fs . . 38.0 22.0 74.0 0.0 . 213 . 0.578947 0 none . . PASS Atlas-INDEL COL4A3BP 10087 hgsc.bcm.edu hg19 5 74712823 74712828 + In_Frame_Del DEL TACCAT TACCAT - novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 TACCAT TACCAT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . COL4A3BP NM_001130105 exon8 c.1095_1100del p.365_367del . . 73.0 26.0 89.0 0.0 . 72 . 0.356164 0 none . . PASS Atlas-INDEL