Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
PLXNA2	5362	hgsc.bcm.edu	hg19	1	208270156	208270156	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	PLXNA2	NM_025179	exon7	c.G1804T	p.V602L	CCTCCACCTCTGT	.	63.0	20.0	82.0	0.0	.	178	.	.	.	none	.	.	PASS	Atlas-SNP
MBD5	55777	hgsc.bcm.edu	hg19	2	149226038	149226038	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	MBD5	NM_018328	exon9	c.A526G	p.N176D	TCATCAAATGCCA	.	99.0	24.0	94.0	0.0	.	164	.	.	.	none	.	.	PASS	Atlas-SNP
CYTIP	9595	hgsc.bcm.edu	hg19	2	158287080	158287080	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	CYTIP	NM_004288	exon5	c.A467G	p.N156S	AGCAGGTTTCCGG	.	87.0	17.0	78.0	0.0	.	45	.	.	.	none	.	.	PASS	Atlas-SNP
PDZD2	23037	hgsc.bcm.edu	hg19	5	32108131	32108131	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	PDZD2	NM_178140	exon24	c.A8410G	p.N2804D	GCTATTAATGGGA	.	126.0	53.0	159.0	0.0	.	306	.	.	.	none	.	.	PASS	Atlas-SNP
SLIT3	6586	hgsc.bcm.edu	hg19	5	168098301	168098301	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	SLIT3,NS,carcinoma,0,1	SLIT3	NM_001271946	exon34	c.C4050G	p.C1350W	GGAGCGGCACAGG	.	36.0	2.0	50.0	0.0	.	224	.	.	.	none	.	.	PASS	Atlas-SNP
GMDS	2762	hgsc.bcm.edu	hg19	6	1930387	1930387	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	GMDS	NM_001500	exon7	c.G721A	p.G241R	GATTTCCCAAACT	.	134.0	33.0	163.0	0.0	.	44	.	.	.	none	.	.	PASS	Atlas-SNP
MEP1A	4224	hgsc.bcm.edu	hg19	6	46801054	46801054	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	MEP1A	NM_005588	exon11	c.A1388G	p.E463G	ATTCGGAGGGATA	.	130.0	19.0	157.0	0.0	.	93	.	.	.	none	.	.	PASS	Atlas-SNP
OPN5	221391	hgsc.bcm.edu	hg19	6	47754339	47754339	+	Silent	SNP	C	C	A	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	OPN5,NS,carcinoma,0,1	OPN5	NM_181744	exon2	c.C219A	p.I73I	GACTATCAATTTA	.	123.0	43.0	137.0	1.0	.	58	.	.	.	none	.	.	PASS	Atlas-SNP
COL19A1	1310	hgsc.bcm.edu	hg19	6	70639518	70639518	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	COL19A1	NM_001858	exon6	c.G592T	p.D198Y	CAGACTGATGAAA	.	93.0	16.0	150.0	0.0	.	232	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA2026	158358	hgsc.bcm.edu	hg19	9	5922386	5922386	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	KIAA2026	NM_001017969	exon8	c.A3610C	p.S1204R	TCTGGCTAGTCTT	.	97.0	32.0	115.0	0.0	.	231	.	.	.	none	.	.	PASS	Atlas-SNP
STAM	8027	hgsc.bcm.edu	hg19	10	17747670	17747670	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	STAM	NM_003473	exon12	c.T1139A	p.M380K	ATCCGATGTATTC	.	166.0	48.0	228.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
OR52N5	390075	hgsc.bcm.edu	hg19	11	5799428	5799428	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	OR52N5	NM_001001922	exon1	c.C437A	p.T146N	GGGTTGGTGAGTG	.	34.0	11.0	54.0	0.0	.	58	.	.	.	none	.	.	PASS	Atlas-SNP
BUD13	84811	hgsc.bcm.edu	hg19	11	116633298	116633298	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	BUD13	NM_032725	exon4	c.T1007C	p.F336S	TCTCCAAAATGGG	.	213.0	66.0	267.0	0.0	.	41	.	.	.	none	.	.	PASS	Atlas-SNP
HECTD4	283450	hgsc.bcm.edu	hg19	12	112694159	112694159	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	.	NM_001109662	exon21	c.G2860A	p.D954N	TGCTATCAAATCT	.	177.0	55.0	191.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
WDR45B	56270	hgsc.bcm.edu	hg19	17	80579499	80579499	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	.	NM_019613	exon6	c.A604G	p.T202A	ATGCAGTTGCAAT	.	81.0	11.0	103.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
KLK3	354	hgsc.bcm.edu	hg19	19	51359636	51359636	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	KLK3	NM_001030050	exon2	c.G187T	p.A63S	CTCACAGCTGCCC	.	144.0	42.0	172.0	0.0	.	76	.	.	.	none	.	.	PASS	Atlas-SNP
SLC23A2	9962	hgsc.bcm.edu	hg19	20	4854628	4854628	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	SLC23A2	NM_203327	exon11	c.G1056A	p.R352R	GCCTTGCCTGGCA	.	161.0	7.0	176.0	0.0	.	62	.	.	.	none	.	.	PASS	Atlas-SNP
JAG1	182	hgsc.bcm.edu	hg19	20	10621489	10621489	+	Silent	SNP	C	C	A	rs202075581	by1000genomes;alternate_allele	TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	JAG1	NM_000214	exon25	c.G3141T	p.S1047S	AATCAGCGAGCTG	.	74.0	5.0	101.0	0.0	.	213	.	.	.	alt	C|0.999;T|0.001	.	PASS	Atlas-SNP
KCNJ4	3761	hgsc.bcm.edu	hg19	22	38823432	38823433	+	In_Frame_Ins	INS	-	-	GGA	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	KCNJ4	NM_004981	exon2	c.706_707insTCC	p.P236delinsSP	.	.	54.0	13.0	72.0	0.0	.	74	.	0.240741	0	none	.	.	PASS	Atlas-INDEL
DUSP12	11266	hgsc.bcm.edu	hg19	1	161726704	161726704	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	DUSP12	NM_007240	exon6	c.989delT	p.L330fs	.	.	68.0	23.0	82.0	0.0	.	20	.	0.338235	0	none	.	.	PASS	Atlas-INDEL