Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
ADAR	103	hgsc.bcm.edu	hg19	1	154562826	154562826	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	ADAR	NM_015840	exon7	c.A2330G	p.K777R	TGCTTCTTGCTGT	.	129.0	22.0	117.0	0.0	.	113	.	.	.	none	.	.	PASS	Atlas-SNP
CACNA1S	779	hgsc.bcm.edu	hg19	1	201034981	201034981	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	CACNA1S	NM_000069	exon22	c.C2838A	p.G946G	CTGGACGCCGATG	.	30.0	10.0	40.0	0.0	.	249	.	.	.	none	.	.	PASS	Atlas-SNP
PARP9	83666	hgsc.bcm.edu	hg19	3	122247353	122247353	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	PARP9	NM_031458	exon11	c.T2423G	p.F808C	CCACTAAAAATAA	.	138.0	6.0	82.0	0.0	.	72	.	.	.	none	.	.	PASS	Atlas-SNP
HPS3	84343	hgsc.bcm.edu	hg19	3	148872995	148872995	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	HPS3	NM_032383	exon8	c.A1502G	p.K501R	TGTACAAAGAGAT	.	96.0	29.0	102.0	0.0	.	104	.	.	.	none	.	.	PASS	Atlas-SNP
STPG2	285555	hgsc.bcm.edu	hg19	4	98633942	98633942	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	.	NM_174952	exon10	c.T1228A	p.L410I	TCCTTAAAACAGG	.	112.0	39.0	136.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
RAB24	53917	hgsc.bcm.edu	hg19	5	176729807	176729807	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	RAB24	NM_001031677	exon3	c.G211C	p.E71Q	TGGCCTCATAGCG	.	97.0	4.0	109.0	0.0	.	19	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA0319	9856	hgsc.bcm.edu	hg19	6	24578370	24578370	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	KIAA0319	NM_001168377	exon9	c.G1473C	p.L491F	GTTAGACAAGCGT	.	131.0	44.0	116.0	0.0	.	117	.	.	.	none	.	.	PASS	Atlas-SNP
SVIL	6840	hgsc.bcm.edu	hg19	10	29811367	29811367	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	SVIL	NM_021738	exon16	c.C3361G	p.P1121A	TGCTGGGTGAGTC	.	86.0	29.0	101.0	0.0	.	226	.	.	.	none	.	.	PASS	Atlas-SNP
PARD3	56288	hgsc.bcm.edu	hg19	10	34648076	34648076	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	PARD3	NM_001184792	exon14	c.A2066G	p.E689G	CTTACCTCATTGC	.	161.0	47.0	171.0	0.0	.	131	.	.	.	none	.	.	PASS	Atlas-SNP
TMEM26	219623	hgsc.bcm.edu	hg19	10	63212836	63212836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	TMEM26	NM_178505	exon1	c.G4A	p.E2K	GTCCCTCCATGCT	.	75.0	28.0	71.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
DNAJB12	54788	hgsc.bcm.edu	hg19	10	74100871	74100871	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	DNAJB12	NM_017626	exon4	c.A617T	p.Q206L	CCGAACTGGTCAT	.	69.0	24.0	79.0	0.0	.	22	.	.	.	none	.	.	PASS	Atlas-SNP
EML3	256364	hgsc.bcm.edu	hg19	11	62376458	62376458	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	EML3	NM_153265	exon7	c.G905T	p.R302L	TGCCCCCGGTAAT	.	325.0	16.0	286.0	0.0	.	61	.	.	.	none	.	.	PASS	Atlas-SNP
NRXN2	9379	hgsc.bcm.edu	hg19	11	64453122	64453122	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	NRXN2	NM_015080	exon6	c.G1148A	p.R383H	ACCTGGCGCAGGT	.	124.0	40.0	112.0	0.0	.	247	.	.	.	none	.	.	PASS	Atlas-SNP
ROBO4	54538	hgsc.bcm.edu	hg19	11	124765531	124765531	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	ROBO4	NM_019055	exon6	c.C858T	p.T286T	AGTCTGGGTCCTG	.	117.0	36.0	89.0	0.0	.	130	.	.	.	none	.	.	PASS	Atlas-SNP
CAND1	55832	hgsc.bcm.edu	hg19	12	67691215	67691215	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	CAND1	NM_018448	exon5	c.C520A	p.P174T	TTCCATCCTTCAA	.	154.0	35.0	141.0	0.0	.	100	.	.	.	none	.	.	PASS	Atlas-SNP
NR2F2	7026	hgsc.bcm.edu	hg19	15	96875635	96875635	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	NR2F2	NM_021005	exon1	c.A301G	p.S101G	TGCAAGAGCTTCT	.	35.0	14.0	29.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
CAMKK1	84254	hgsc.bcm.edu	hg19	17	3788981	3788981	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	CAMKK1	NM_032294	exon2	c.A1G	p.M1V	CCTCCATTGCTTC	.	99.0	17.0	56.0	0.0	.	70	.	.	.	none	.	.	PASS	Atlas-SNP
MYBBP1A	10514	hgsc.bcm.edu	hg19	17	4451584	4451584	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	MYBBP1A	NM_014520	exon12	c.G1578A	p.T526T	GAACTGCGTGCTG	.	198.0	111.0	136.0	0.0	.	69	.	.	.	none	.	.	PASS	Atlas-SNP
GPRC5C	55890	hgsc.bcm.edu	hg19	17	72436053	72436053	+	Silent	SNP	T	T	A	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	GPRC5C	NM_022036	exon2	c.T273A	p.S91S	CCGCTCTGGGGCG	.	178.0	98.0	95.0	0.0	.	92	.	.	.	none	.	.	PASS	Atlas-SNP
APMAP	57136	hgsc.bcm.edu	hg19	20	24944513	24944513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	APMAP	NM_020531	exon9	c.G1187A	p.G396E	AGGTGCCCATCGT	.	139.0	24.0	109.0	0.0	.	3	.	.	.	none	.	.	PASS	Atlas-SNP
DSCAM	1826	hgsc.bcm.edu	hg19	21	41459172	41459172	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	DSCAM	NM_001271534	exon22	c.C3893T	p.P1298L	ATCCATGGAGTAG	.	137.0	14.0	165.0	0.0	.	347	.	.	.	none	.	.	PASS	Atlas-SNP
SNAP29	9342	hgsc.bcm.edu	hg19	22	21237785	21237785	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	SNAP29,right_lower_lobe,carcinoma,0,1	SNAP29	NM_004782	exon4	c.G547C	p.A183P	GGTTCTGCCATGA	.	327.0	100.0	385.0	1.0	.	22	.	.	.	none	.	.	PASS	Atlas-SNP
KAT6A	7994	hgsc.bcm.edu	hg19	8	41836161	41836161	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	.	NM_001099412	exon7	c.1043delT	p.V348fs	.	.	379.0	105.0	420.0	0.0	.	.	.	0.277045	0	none	.	.	PASS	Atlas-INDEL
FGL2	10875	hgsc.bcm.edu	hg19	7	76828725	76828726	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	FGL2	NM_006682	exon1	c.386_387insA	p.R129fs	.	.	164.0	33.0	129.0	0.0	.	40	.	0.20122	0	none	.	.	PASS	Atlas-INDEL
CNTLN	54875	hgsc.bcm.edu	hg19	9	17462949	17462949	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	CNTLN	NM_017738	exon20	c.3341delA	p.N1114fs	.	.	97.0	29.0	114.0	0.0	.	128	.	0.298969	0	none	.	.	PASS	Atlas-INDEL
RSPRY1	89970	hgsc.bcm.edu	hg19	16	57261323	57261323	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	RSPRY1	NM_133368	exon11	c.1230delC	p.Y410X	.	.	99.0	54.0	85.0	0.0	.	49	.	0.545455	0	none	.	.	PASS	Atlas-INDEL
BACH1	571	hgsc.bcm.edu	hg19	21	30698866	30698866	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	BACH1	NM_206866	exon3	c.720delT	p.R240fs	.	.	113.0	38.0	92.0	0.0	.	66	.	0.336283	0	none	.	.	PASS	Atlas-INDEL