Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
FRRS1	391059	hgsc.bcm.edu	hg19	1	100214268	100214268	+	Silent	SNP	A	A	G	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	FRRS1	NM_001013660	exon3	c.T57C	p.Y19Y	AGCCACATAACTA	.	107.0	38.0	112.0	0.0	.	50	.	.	.	none	.	.	PASS	Atlas-SNP
ALX3	257	hgsc.bcm.edu	hg19	1	110604111	110604111	+	Silent	SNP	G	G	T	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	ALX3	NM_006492	exon3	c.C669A	p.P223P	CGTGAAGGGGTTC	.	101.0	34.0	106.0	0.0	.	16	.	.	.	none	.	.	PASS	Atlas-SNP
DSTYK	25778	hgsc.bcm.edu	hg19	1	205132867	205132867	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	DSTYK_ENST00000367162,colon,carcinoma,0,1	DSTYK	NM_199462	exon4	c.G1541C	p.S514T	TAATTACTGGTGA	.	31.0	2.0	35.0	0.0	.	87	.	.	.	none	.	.	PASS	Atlas-SNP
BIN1	274	hgsc.bcm.edu	hg19	2	127828371	127828371	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	BIN1	NM_139346	exon3	c.A187G	p.K63E	GATCCTTCTGCAG	.	56.0	24.0	31.0	0.0	.	85	.	.	.	none	.	.	PASS	Atlas-SNP
NEB	4703	hgsc.bcm.edu	hg19	2	152512859	152512859	+	Silent	SNP	C	C	T	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	NEB	NM_004543	exon49	c.G6303A	p.E2101E	CTTGTACTCCCGA	.	155.0	66.0	191.0	0.0	.	1697	.	.	.	none	.	.	PASS	Atlas-SNP
PRKRA	8575	hgsc.bcm.edu	hg19	2	179306336	179306336	+	Splice_Site	SNP	C	C	T	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	PRKRA,NS,carcinoma,0,1	PRKRA	NM_001139518	exon7	c.534+1G>A	.	TACTCACTAAAGA	.	80.0	5.0	61.0	1.0	.	56	.	.	.	none	.	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179433843	179433843	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	TTN	NM_001267550	exon326	c.C77016G	p.Y25672X	TCTAAAGTAATAA	.	231.0	99.0	200.0	0.0	.	18412	.	.	.	none	.	.	PASS	Atlas-SNP
RBM6	10180	hgsc.bcm.edu	hg19	3	50005960	50005960	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	RBM6	NM_005777	exon3	c.G1102T	p.D368Y	GACCAAGATAAGT	.	96.0	43.0	72.0	0.0	.	85	.	.	.	none	.	.	PASS	Atlas-SNP
PET112	5188	hgsc.bcm.edu	hg19	4	152592364	152592364	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	PET112	NM_004564	exon13	c.A1636G	p.M546V	TTATCATGACTGG	.	187.0	88.0	156.0	0.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
F12	2161	hgsc.bcm.edu	hg19	5	176831341	176831341	+	Silent	SNP	G	G	A	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	F12	NM_000505	exon9	c.C874T	p.L292L	GTGCCAGGTCGCA	.	35.0	15.0	50.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
VPS37D	155382	hgsc.bcm.edu	hg19	7	73083798	73083798	+	Missense_Mutation	SNP	C	C	G	rs370705512	alternate_allele	TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	VPS37D	NM_001077621	exon2	c.C188G	p.A63G	ACTACGCGCTGGC	.	10.0	4.0	7.0	0.0	.	10	.	.	.	alt	.	.	PASS	Atlas-SNP
EDF1	8721	hgsc.bcm.edu	hg19	9	139757816	139757816	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	EDF1	NM_003792	exon3	c.G215T	p.R72M	GTCACCCTGTCAT	.	48.0	19.0	69.0	0.0	.	9	.	.	.	none	.	.	PASS	Atlas-SNP
RPL6	6128	hgsc.bcm.edu	hg19	12	112843158	112843158	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	RPL6	NM_001024662	exon7	c.G737A	p.R246H	ATCTTGCGCTGCT	.	59.0	16.0	49.0	0.0	.	20	.	.	.	none	.	.	PASS	Atlas-SNP
CHD2	1106	hgsc.bcm.edu	hg19	15	93567925	93567925	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	CHD2_ENST00000394196,NS,carcinoma,0,1	CHD2	NM_001271	exon39	c.G5477A	p.R1826Q	ATGTTCGGAAAAC	.	44.0	4.0	59.0	0.0	.	280	.	.	.	none	.	.	PASS	Atlas-SNP
PLEKHG4	25894	hgsc.bcm.edu	hg19	16	67315014	67315014	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	PLEKHG4	NM_001129728	exon5	c.G740C	p.G247A	CACTGGGACTGAC	.	118.0	62.0	155.0	0.0	.	94	.	.	.	none	.	.	PASS	Atlas-SNP
ABR	29	hgsc.bcm.edu	hg19	17	975901	975901	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	ABR,NS,carcinoma,0,1	ABR	NM_021962	exon8	c.G847T	p.E283X	TGTCCTCGTTGAT	.	30.0	2.0	41.0	0.0	.	119	.	.	.	none	.	.	PASS	Atlas-SNP
CDK12	51755	hgsc.bcm.edu	hg19	17	37627488	37627488	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	CDK12	NM_016507	exon2	c.T1403A	p.L468Q	CACATCTAAACAC	.	187.0	50.0	159.0	0.0	.	161	.	.	.	none	.	.	PASS	Atlas-SNP
JUP	3728	hgsc.bcm.edu	hg19	17	39914006	39914006	+	Missense_Mutation	SNP	G	G	T	rs199511559	alternate_allele	TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	JUP,NS,carcinoma,0,1	JUP	NM_021991	exon11	c.C1804A	p.R602S	CCACGCGCTGGAT	.	56.0	4.0	47.0	0.0	.	64	.	.	.	alt	.	.	PASS	Atlas-SNP
CDC27	996	hgsc.bcm.edu	hg19	17	45214661	45214661	+	Silent	SNP	G	G	A	rs111322439		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	CDC27_ENST00000531206,rectum,carcinoma,0,4	CDC27	NM_001114091	exon14	c.C1788T	p.F596F	TCTCTGGAAGAAT	.	117.0	9.0	81.0	1.0	.	337	.	.	.	weak	G|0.500;A|0.500	0.500	PASS	Atlas-SNP
CLTC	1213	hgsc.bcm.edu	hg19	17	57754485	57754485	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	CLTC	NM_004859	exon17	c.A2732G	p.K911R	GTGAGAAGAGAGA	.	127.0	82.0	82.0	0.0	.	124	.	.	.	none	.	.	PASS	Atlas-SNP
SLC16A6	9120	hgsc.bcm.edu	hg19	17	66267173	66267173	+	Silent	SNP	A	A	G	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	SLC16A6	NM_001174166	exon6	c.T1128C	p.F376F	AAAAGTAAAGGCA	.	130.0	85.0	94.0	0.0	.	56	.	.	.	none	.	.	PASS	Atlas-SNP
FBXO7	25793	hgsc.bcm.edu	hg19	22	32889131	32889131	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	FBXO7	NM_012179	exon7	c.C1007A	p.P336Q	TCCTCCCATTGGA	.	278.0	111.0	270.0	1.0	.	131	.	.	.	none	.	.	PASS	Atlas-SNP
INF2	64423	hgsc.bcm.edu	hg19	14	105174895	105174896	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	INF2	NM_001031714	exon9	c.1858_1859insC	p.A620fs	.	.	43.0	22.0	44.0	0.0	.	148	.	0.511628	0	none	.	.	PASS	Atlas-INDEL
FGGY	55277	hgsc.bcm.edu	hg19	1	60133071	60133091	+	In_Frame_Del	DEL	TACTGGTAAGTCTGGGAAAGA	TACTGGTAAGTCTGGGAAAGA	-	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	TACTGGTAAGTCTGGGAAAGA	TACTGGTAAGTCTGGGAAAGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	FGGY	NM_001113411	exon14	c.1484_1489del	p.495_497del	.	.	119.0	19.0	252.0	0.0	.	99	.	0.159664	0	none	.	.	PASS	Atlas-INDEL
PPP6R3	55291	hgsc.bcm.edu	hg19	11	68318634	68318637	+	Frame_Shift_Del	DEL	CATC	CATC	-	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	CATC	CATC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	PPP6R3	NM_001164161	exon6	c.597_600del	p.199_200del	.	.	55.0	25.0	79.0	0.0	.	159	.	0.454545	0	none	.	.	PASS	Atlas-INDEL
OR52H1	390067	hgsc.bcm.edu	hg19	11	5566652	5566652	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	OR52H1	NM_001005289	exon1	c.103delA	p.I35fs	.	.	72.0	27.0	99.0	0.0	.	46	.	0.375	0	none	.	.	PASS	Atlas-INDEL
SBNO1	55206	hgsc.bcm.edu	hg19	12	123801801	123801802	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	SBNO1	NM_001167856	exon20	c.2902_2903insA	p.P968fs	.	.	115.0	36.0	91.0	0.0	.	138	.	0.313043	0	none	.	.	PASS	Atlas-INDEL
NCOA3	8202	hgsc.bcm.edu	hg19	20	46252817	46252817	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	NCOA3	NM_181659	exon4	c.245delT	p.I82fs	.	.	89.0	17.0	38.0	0.0	.	156	.	0.191011	0	none	.	.	PASS	Atlas-INDEL