Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
FOXE3	2301	hgsc.bcm.edu	hg19	1	47882415	47882415	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	FOXE3	NM_012186	exon1	c.A428C	p.N143T	AGGGCAACTACTG	.	103.0	30.0	101.0	0.0	.	8	.	.	.	none	.	.	PASS	Atlas-SNP
PEA15	8682	hgsc.bcm.edu	hg19	1	160181403	160181403	+	Silent	SNP	C	C	A	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	PEA15	NM_003768	exon2	c.C69A	p.L23L	ACAGCTCAAGTCG	.	100.0	16.0	131.0	0.0	.	7	.	.	.	none	.	.	PASS	Atlas-SNP
PROM2	150696	hgsc.bcm.edu	hg19	2	95941238	95941238	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	PROM2	NM_001165977	exon2	c.G274A	p.A92T	GAGCTGGCCTCCG	.	82.0	27.0	88.0	0.0	.	78	.	.	.	none	.	.	PASS	Atlas-SNP
ATG16L1	55054	hgsc.bcm.edu	hg19	2	234173559	234173559	+	Silent	SNP	T	T	C	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	ATG16L1	NM_017974	exon5	c.T411C	p.T137T	GCAGACTATCTCT	.	114.0	38.0	129.0	0.0	.	83	.	.	.	none	.	.	PASS	Atlas-SNP
TNXB	7148	hgsc.bcm.edu	hg19	6	32023635	32023635	+	Silent	SNP	A	A	G	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	TNXB_ENST00000375247,NS,carcinoma,0,2	TNXB	NM_019105	exon24	c.T8460C	p.G2820G	TGTCACACCCACG	.	71.0	5.0	109.0	0.0	.	553	.	.	.	none	.	.	PASS	Atlas-SNP
SCRN1	9805	hgsc.bcm.edu	hg19	7	29994945	29994945	+	Missense_Mutation	SNP	C	C	T	rs75604334	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	SCRN1	NM_001145514	exon3	c.G251A	p.R84K	TAGGTCCTTGGAA	.	164.0	53.0	124.0	0.0	.	85	.	.	.	alt	C|0.982;G|0.018	.	PASS	Atlas-SNP
DOCK4	9732	hgsc.bcm.edu	hg19	7	111368503	111368503	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	DOCK4	NM_014705	exon52	c.C5728G	p.L1910V	GCCGCAGAGTCCG	.	113.0	6.0	98.0	0.0	.	365	.	.	.	none	.	.	PASS	Atlas-SNP
GALNT11	63917	hgsc.bcm.edu	hg19	7	151805279	151805279	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	GALNT11	NM_022087	exon6	c.T869C	p.V290A	CTGTCGTCCGCGG	.	143.0	106.0	90.0	0.0	.	59	.	.	.	none	.	.	PASS	Atlas-SNP
MYOM2	9172	hgsc.bcm.edu	hg19	8	2063780	2063780	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	MYOM2	NM_003970	exon26	c.C3209T	p.T1070I	AAGCTACTGGCAT	.	79.0	36.0	128.0	0.0	.	251	.	.	.	none	.	.	PASS	Atlas-SNP
MTUS1	57509	hgsc.bcm.edu	hg19	8	17513393	17513393	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	MTUS1	NM_001001924	exon9	c.C3087A	p.Y1029X	CATTTTGTACTTC	.	115.0	5.0	141.0	0.0	.	144	.	.	.	none	.	.	PASS	Atlas-SNP
CCDC180	0	hgsc.bcm.edu	hg19	9	100117239	100117239	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	.	NM_020893	exon24	c.A3345G	p.I1115M	TTTCATAGAGAAA	.	108.0	48.0	112.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
DNAJC25-GNG10	552891	hgsc.bcm.edu	hg19	9	114429094	114429094	+	Splice_Site	SNP	G	G	A	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	DNAJC25-GNG10	NM_004125	exon2	c.337-1G>A	.	GTTTCAGGTCTCT	.	43.0	14.0	56.0	0.0	.	7	.	.	.	none	.	.	PASS	Atlas-SNP
ZER1	10444	hgsc.bcm.edu	hg19	9	131513498	131513498	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	ZER1,NS,carcinoma,0,1	ZER1	NM_006336	exon7	c.A1088G	p.Y363C	TCCGTGTAGGCCT	.	34.0	3.0	32.0	0.0	.	49	.	.	.	none	.	.	PASS	Atlas-SNP
VIM	7431	hgsc.bcm.edu	hg19	10	17276732	17276732	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	VIM	NM_003380	exon6	c.C923G	p.A308G	ATGACGCCCTGCG	.	116.0	17.0	134.0	0.0	.	71	.	.	.	none	.	.	PASS	Atlas-SNP
PPA1	5464	hgsc.bcm.edu	hg19	10	71969322	71969322	+	Missense_Mutation	SNP	T	T	C	rs80155016	bycluster	TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	PPA1	NM_021129	exon7	c.A631G	p.K211E	TATCTTTAAATTC	.	81.0	6.0	85.0	0.0	.	24	.	.	.	weak	.	.	PASS	Atlas-SNP
C11orf49	79096	hgsc.bcm.edu	hg19	11	47074069	47074069	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	C11orf49	NM_001003677	exon3	c.G280T	p.D94Y	AATGGCGGTAAGT	.	102.0	47.0	82.0	0.0	.	41	.	.	.	none	.	.	PASS	Atlas-SNP
ANKRD13D	338692	hgsc.bcm.edu	hg19	11	67059495	67059495	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	ANKRD13D	NM_207354	exon6	c.A575G	p.D192G	ACCATGACCGGCA	.	57.0	4.0	101.0	0.0	.	71	.	.	.	none	.	.	PASS	Atlas-SNP
ARHGEF17	9828	hgsc.bcm.edu	hg19	11	73020470	73020470	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	ARHGEF17	NM_014786	exon1	c.G787A	p.G263R	CTGCCTGGAGCCC	.	44.0	23.0	47.0	0.0	.	117	.	.	.	none	.	.	PASS	Atlas-SNP
MED17	9440	hgsc.bcm.edu	hg19	11	93542943	93542943	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	MED17	NM_004268	exon11	c.C1645A	p.L549M	CAAGTACTGAGCT	.	163.0	71.0	189.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
VPS26B	112936	hgsc.bcm.edu	hg19	11	134115448	134115448	+	Silent	SNP	C	C	T	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	VPS26B	NM_052875	exon6	c.C975T	p.T325T	GCGGACCCCCAGC	.	32.0	18.0	37.0	0.0	.	30	.	.	.	none	.	.	PASS	Atlas-SNP
PTPN11	5781	hgsc.bcm.edu	hg19	12	112892458	112892458	+	Silent	SNP	T	T	C	rs78376169	bycluster	TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	PTPN11,NS,carcinoma,0,2	PTPN11	NM_080601	exon5	c.T616C	p.L206L	GAAACATTGGGTA	.	69.0	3.0	73.0	2.0	.	623	.	.	.	weak	.	.	PASS	Atlas-SNP
PTGDR	5729	hgsc.bcm.edu	hg19	14	52734893	52734893	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	PTGDR	NM_000953	exon1	c.C361A	p.L121M	TCGACACTGCAAC	.	229.0	82.0	306.0	0.0	.	58	.	.	.	none	.	.	PASS	Atlas-SNP
PTGDR	5729	hgsc.bcm.edu	hg19	14	52734894	52734894	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	PTGDR	NM_000953	exon1	c.T362G	p.L121R	CGACACTGCAACT	.	231.0	81.0	309.0	0.0	.	58	.	.	.	none	.	.	PASS	Atlas-SNP
PLA2G4F	255189	hgsc.bcm.edu	hg19	15	42442584	42442584	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	PLA2G4F	NM_213600	exon9	c.T872C	p.V291A	AGGGCCACAGAAC	.	29.0	15.0	31.0	0.0	.	75	.	.	.	none	.	.	PASS	Atlas-SNP
TICRR	90381	hgsc.bcm.edu	hg19	15	90129030	90129030	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	.	NM_152259	exon4	c.G1268A	p.R423H	TGTGCCGCACCAA	.	68.0	6.0	90.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
DSG4	147409	hgsc.bcm.edu	hg19	18	28980927	28980927	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	DSG4	NM_001134453	exon10	c.A1361T	p.K454M	TTGATAAGAAGTC	.	78.0	37.0	77.0	0.0	.	343	.	.	.	none	.	.	PASS	Atlas-SNP
WDR18	57418	hgsc.bcm.edu	hg19	19	992048	992048	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	WDR18	NM_024100	exon8	c.A1025G	p.H342R	ACAAGCACCTGCT	.	27.0	16.0	9.0	0.0	.	20	.	.	.	none	.	.	PASS	Atlas-SNP
NLRP5	126206	hgsc.bcm.edu	hg19	19	56511120	56511120	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	NLRP5	NM_153447	exon1	c.G29A	p.G10E	AACTTGGAGCTGC	.	234.0	35.0	241.0	0.0	.	217	.	.	.	none	.	.	PASS	Atlas-SNP
SLC19A1	6573	hgsc.bcm.edu	hg19	21	46935688	46935688	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	SLC19A1	NM_194255	exon6	c.T1660C	p.S554P	GGCCTGAGGCTTG	.	57.0	4.0	65.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
ARHGAP21	57584	hgsc.bcm.edu	hg19	10	24885703	24885704	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	ARHGAP21	NM_020824	exon17	c.3443_3444insC	p.R1148fs	.	.	99.0	42.0	119.0	0.0	.	185	.	0.424242	0	none	.	.	PASS	Atlas-INDEL