Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
CGN	57530	hgsc.bcm.edu	hg19	1	151502428	151502428	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	CGN	NM_020770	exon12	c.G2150A	p.R717Q	GGCAGCGGCGGGC	.	208.0	105.0	186.0	0.0	.	106	.	.	.	none	.	.	PASS	Atlas-SNP
SHE	126669	hgsc.bcm.edu	hg19	1	154471704	154471704	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	SHE	NM_001010846	exon2	c.T602C	p.L201S	TCTTCTAAAATGA	.	133.0	39.0	128.0	0.0	.	41	.	.	.	none	.	.	PASS	Atlas-SNP
IGFN1	91156	hgsc.bcm.edu	hg19	1	201166405	201166405	+	Silent	SNP	C	C	T	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	IGFN1	NM_001164586	exon5	c.C327T	p.Y109Y	TGCGTACGGAGAG	.	130.0	41.0	88.0	0.0	.	220	.	.	.	none	.	.	PASS	Atlas-SNP
CR1	1378	hgsc.bcm.edu	hg19	1	207669654	207669654	+	Silent	SNP	G	G	C	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	CR1	NM_000573	exon1	c.G42C	p.P14P	CGGGCCGCCGGCG	.	48.0	6.0	39.0	0.0	.	354	.	.	.	none	.	.	PASS	Atlas-SNP
FMN2	56776	hgsc.bcm.edu	hg19	1	240255571	240255571	+	Silent	SNP	C	C	G	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	FMN2	NM_020066	exon1	c.C162G	p.G54G	AGGGGGCGGCGGC	.	9.0	4.0	5.0	0.0	.	451	.	.	.	none	.	.	PASS	Atlas-SNP
FH	2271	hgsc.bcm.edu	hg19	1	241661272	241661272	+	Splice_Site	SNP	T	T	G	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	FH	NM_000143	exon11	c.1391-2A>C	.	ATACCCTGAAGAA	.	121.0	32.0	125.0	0.0	.	64	.	.	.	none	.	.	PASS	Atlas-SNP
LRRTM4	80059	hgsc.bcm.edu	hg19	2	77746638	77746638	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	LRRTM4	NM_024993	exon3	c.C357A	p.N119K	AATTTTGTTGGAG	.	100.0	27.0	109.0	0.0	.	334	.	.	.	none	.	.	PASS	Atlas-SNP
MAP3K19	80122	hgsc.bcm.edu	hg19	2	135738691	135738691	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	.	NM_025052	exon9	c.G3620C	p.C1207S	CTGGCACAGCCAA	.	80.0	24.0	66.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
TRIO	7204	hgsc.bcm.edu	hg19	5	14497115	14497115	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	TRIO	NM_007118	exon50	c.G8008C	p.V2670L	AACAAGGTATCTG	.	154.0	43.0	169.0	0.0	.	305	.	.	.	none	.	.	PASS	Atlas-SNP
TNXB	7148	hgsc.bcm.edu	hg19	6	32037362	32037362	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	TNXB	NM_019105	exon15	c.G5555A	p.R1852H	CCCACACGCTTGC	.	127.0	8.0	99.0	0.0	.	553	.	.	.	none	.	.	PASS	Atlas-SNP
EYA4	2070	hgsc.bcm.edu	hg19	6	133849920	133849920	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	EYA4	NM_172105	exon20	c.G1897T	p.A633S	CACCAAGCACTGG	.	291.0	15.0	277.0	0.0	.	196	.	.	.	none	.	.	PASS	Atlas-SNP
CCDC132	55610	hgsc.bcm.edu	hg19	7	92932815	92932815	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	CCDC132	NM_017667	exon17	c.T1405G	p.W469G	GAGACTTGGGAAC	.	42.0	16.0	38.0	0.0	.	136	.	.	.	none	.	.	PASS	Atlas-SNP
KIF13B	23303	hgsc.bcm.edu	hg19	8	29037680	29037680	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	KIF13B	NM_015254	exon8	c.C661T	p.R221X	GGGATCGGCTACT	.	380.0	150.0	319.0	0.0	.	192	.	.	.	none	.	.	PASS	Atlas-SNP
WWP1	11059	hgsc.bcm.edu	hg19	8	87443954	87443954	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	WWP1,NS,carcinoma,0,1	WWP1	NM_007013	exon14	c.G1583A	p.R528H	ATCCTCGCAATGG	.	149.0	6.0	166.0	0.0	.	97	.	.	.	none	.	.	PASS	Atlas-SNP
PHF20L1	51105	hgsc.bcm.edu	hg19	8	133829702	133829702	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	PHF20L1	NM_016018	exon12	c.T1491G	p.C497W	TGAATGTCCCAGG	.	74.0	9.0	45.0	0.0	.	129	.	.	.	none	.	.	PASS	Atlas-SNP
SPATA31D1	389763	hgsc.bcm.edu	hg19	9	84608041	84608041	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	.	NM_001001670	exon4	c.G2656A	p.V886I	CACTGCGTTGATA	.	201.0	96.0	290.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
ITGA8	8516	hgsc.bcm.edu	hg19	10	15688856	15688856	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	ITGA8	NM_003638	exon12	c.A1196G	p.D399G	TATCCATCTTGGT	.	101.0	7.0	99.0	0.0	.	230	.	.	.	none	.	.	PASS	Atlas-SNP
TRPM5	29850	hgsc.bcm.edu	hg19	11	2432685	2432685	+	Silent	SNP	C	C	T	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	TRPM5	NM_014555	exon18	c.G2679A	p.A893A	CAGCAGCGCCTGG	.	88.0	27.0	70.0	0.0	.	86	.	.	.	none	.	.	PASS	Atlas-SNP
ACAD8	27034	hgsc.bcm.edu	hg19	11	134131026	134131026	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	ACAD8	NM_014384	exon7	c.G794A	p.G265D	GGCAGGGCTTCCT	.	170.0	74.0	175.0	0.0	.	33	.	.	.	none	.	.	PASS	Atlas-SNP
MYO1A	4640	hgsc.bcm.edu	hg19	12	57440666	57440666	+	Silent	SNP	G	G	A	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	MYO1A	NM_005379	exon7	c.C522T	p.L174L	ACCACCGAGGGGG	.	188.0	15.0	168.0	0.0	.	122	.	.	.	none	.	.	PASS	Atlas-SNP
CFL2	1073	hgsc.bcm.edu	hg19	14	35182529	35182529	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	CFL2	NM_021914	exon2	c.G242A	p.R81Q	GCATATCGGCAAT	.	94.0	5.0	131.0	0.0	.	22	.	.	.	none	.	.	PASS	Atlas-SNP
PRC1	9055	hgsc.bcm.edu	hg19	15	91517424	91517424	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	PRC1,NS,carcinoma,0,1	PRC1	NM_199413	exon11	c.C1403A	p.P468H	GTTCGAGGAGCGC	.	249.0	21.0	274.0	0.0	.	51	.	.	.	none	.	.	PASS	Atlas-SNP
DCUN1D3	123879	hgsc.bcm.edu	hg19	16	20871250	20871250	+	Silent	SNP	G	G	A	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	DCUN1D3	NM_173475	exon3	c.C873T	p.L291L	TGAGCTGAGTGCA	.	212.0	91.0	170.0	0.0	.	29	.	.	.	none	.	.	PASS	Atlas-SNP
CDH8	1006	hgsc.bcm.edu	hg19	16	61687954	61687954	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	CDH8	NM_001796	exon12	c.T1958G	p.I653S	TTGATAATTAATG	.	177.0	54.0	145.0	0.0	.	273	.	.	.	none	.	.	PASS	Atlas-SNP
RPL13	6137	hgsc.bcm.edu	hg19	16	89627425	89627425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	RPL13	NM_001243131	exon2	c.C58T	p.R20W	TGGCAGCGGCGCG	.	86.0	41.0	48.0	0.0	.	11	.	.	.	none	.	.	PASS	Atlas-SNP
SLC52A1	55065	hgsc.bcm.edu	hg19	17	4937586	4937586	+	Silent	SNP	G	G	T	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	.	NM_017986	exon3	c.C198A	p.T66T	CCACAGGGTCACC	.	79.0	4.0	36.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
ITGA3	3675	hgsc.bcm.edu	hg19	17	48148253	48148253	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	ITGA3	NM_005501	exon5	c.A710G	p.Y237C	CTGAGTATAGTTA	.	237.0	94.0	236.0	0.0	.	128	.	.	.	none	.	.	PASS	Atlas-SNP
TCEB3B	51224	hgsc.bcm.edu	hg19	18	44560193	44560193	+	Silent	SNP	G	G	A	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	TCEB3B	NM_016427	exon1	c.C1443T	p.D481D	CATGGAGTCAGAA	.	153.0	63.0	197.0	0.0	.	141	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF709	163051	hgsc.bcm.edu	hg19	19	12574997	12574997	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	ZNF709	NM_152601	exon4	c.G1739A	p.R580K	TGAGTCCTTTCAT	.	199.0	57.0	176.0	0.0	.	80	.	.	.	none	.	.	PASS	Atlas-SNP
FPR3	2359	hgsc.bcm.edu	hg19	19	52327625	52327625	+	Silent	SNP	T	T	A	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	FPR3	NM_002030	exon2	c.T624A	p.I208I	CATTATTGGCTTC	.	155.0	67.0	242.0	0.0	.	66	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA1755	85449	hgsc.bcm.edu	hg19	20	36870194	36870194	+	Silent	SNP	C	C	T	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	KIAA1755	NM_001029864	exon3	c.G339A	p.E113E	CTGCTCCTCCTGG	.	184.0	36.0	129.0	0.0	.	145	.	.	.	none	.	.	PASS	Atlas-SNP
RBM11	54033	hgsc.bcm.edu	hg19	21	15599303	15599303	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	RBM11	NM_144770	exon5	c.G535T	p.D179Y	GTTCCAGATCTTG	.	364.0	149.0	371.0	1.0	.	41	.	.	.	none	.	.	PASS	Atlas-SNP
GRIPAP1	56850	hgsc.bcm.edu	hg19	X	48840222	48840222	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	GRIPAP1	NM_020137	exon15	c.G1237A	p.E413K	ACTGCTCCTTCTC	.	245.0	17.0	232.0	0.0	.	128	.	.	.	none	.	.	PASS	Atlas-SNP
PCDH11X	27328	hgsc.bcm.edu	hg19	X	91133625	91133625	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	PCDH11X	NM_001168363	exon2	c.C2386A	p.P796T	GTGACCCCAAATA	.	497.0	213.0	691.0	1.0	.	714	.	.	.	none	.	.	PASS	Atlas-SNP
LAMP2	3920	hgsc.bcm.edu	hg19	X	119581842	119581842	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	LAMP2	NM_013995	exon5	c.C595T	p.P199S	TGGTGGGTGCCAC	.	125.0	9.0	132.0	0.0	.	101	.	.	.	none	.	.	PASS	Atlas-SNP
ATP1B1	481	hgsc.bcm.edu	hg19	1	169094224	169094232	+	In_Frame_Del	DEL	AAAAGTACA	AAAAGTACA	-	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	AAAAGTACA	AAAAGTACA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	ATP1B1	NM_001677	exon3	c.328_336del	p.110_112del	.	.	133.0	29.0	148.0	0.0	.	29	.	0.218045	0	none	.	.	PASS	Atlas-Indel,Pindel
PRR21	643905	hgsc.bcm.edu	hg19	2	240982306	240982307	+	In_Frame_Ins	INS	-	-	AGG	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	PRR21	NM_001080835	exon1	c.94_95insCCT	p.S32delinsPS	.	.	148.0	10.0	104.0	0.0	.	53	.	0.0675676	0	none	.	.	PASS	Atlas-INDEL