Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
PIK3CD	5293	hgsc.bcm.edu	hg19	1	9782066	9782066	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	PIK3CD	NM_005026	exon17	c.G2089T	p.D697Y	CTGAATGACTTCG	.	99.0	26.0	123.0	0.0	.	86	.	.	.	none	.	.	PASS	Atlas-SNP
TAS1R2	80834	hgsc.bcm.edu	hg19	1	19186021	19186021	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	TAS1R2	NM_152232	exon1	c.T134A	p.M45K	CCCTTCATGTTGG	.	107.0	16.0	162.0	0.0	.	134	.	.	.	none	.	.	PASS	Atlas-SNP
LRRC8C	84230	hgsc.bcm.edu	hg19	1	90180336	90180336	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	LRRC8C	NM_032270	exon3	c.T2207C	p.I736T	TGAAGATTGGAAA	.	88.0	7.0	103.0	0.0	.	73	.	.	.	none	.	.	PASS	Atlas-SNP
VAV3	10451	hgsc.bcm.edu	hg19	1	108307784	108307784	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	VAV3	NM_006113	exon9	c.G835T	p.G279W	ACTGCCCGTAAAT	.	100.0	8.0	70.0	0.0	.	176	.	.	.	none	.	.	PASS	Atlas-SNP
S100A3	6274	hgsc.bcm.edu	hg19	1	153520312	153520312	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	S100A3,NS,carcinoma,0,1	S100A3	NM_002960	exon3	c.G152T	p.R51L	CATTCCCGAAACT	.	179.0	10.0	245.0	0.0	.	7	.	.	.	none	.	.	PASS	Atlas-SNP
PRELP	5549	hgsc.bcm.edu	hg19	1	203455866	203455866	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	PRELP	NM_201348	exon3	c.C1006A	p.L336I	AACGACCTAGTGG	.	125.0	36.0	142.0	0.0	.	63	.	.	.	none	.	.	PASS	Atlas-SNP
CKAP2L	150468	hgsc.bcm.edu	hg19	2	113513875	113513875	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	CKAP2L	NM_152515	exon4	c.G1073A	p.S358N	ACTTGGCTGGACT	.	175.0	64.0	191.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179425266	179425266	+	Silent	SNP	A	A	G	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	TTN	NM_001267550	exon326	c.T85593C	p.Y28531Y	AACACCATATTTA	.	60.0	20.0	72.0	0.0	.	18412	.	.	.	none	.	.	PASS	Atlas-SNP
ITGA4	3676	hgsc.bcm.edu	hg19	2	182399601	182399601	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	ITGA4	NM_000885	exon27	c.T2942C	p.I981T	TGATTATTTCAAG	.	103.0	29.0	116.0	0.0	.	142	.	.	.	none	.	.	PASS	Atlas-SNP
NBEAL1	65065	hgsc.bcm.edu	hg19	2	204058575	204058575	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	NBEAL1	NM_001114132	exon46	c.G6892T	p.D2298Y	AAAATAGACACTT	.	149.0	42.0	139.0	0.0	.	266	.	.	.	none	.	.	PASS	Atlas-SNP
SLC9C1	285335	hgsc.bcm.edu	hg19	3	111918287	111918287	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	.	NM_183061	exon20	c.G2404A	p.A802T	TGACAGCAATTTC	.	89.0	45.0	86.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
TMCC1	23023	hgsc.bcm.edu	hg19	3	129390056	129390056	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	TMCC1	NM_001017395	exon4	c.T628A	p.S210T	TACTGGAGGCCAC	.	183.0	12.0	145.0	0.0	.	105	.	.	.	none	.	.	PASS	Atlas-SNP
N4BP2	55728	hgsc.bcm.edu	hg19	4	40103811	40103811	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	N4BP2	NM_018177	exon4	c.A346G	p.I116V	AGTAAAATAATGG	.	90.0	28.0	69.0	0.0	.	166	.	.	.	none	.	.	PASS	Atlas-SNP
DAGLB	221955	hgsc.bcm.edu	hg19	7	6474439	6474439	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	DAGLB	NM_139179	exon4	c.G632T	p.R211L	GCAACCCGAGTAT	.	205.0	12.0	224.0	0.0	.	74	.	.	.	none	.	.	PASS	Atlas-SNP
TSGA13	114960	hgsc.bcm.edu	hg19	7	130353922	130353922	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	TSGA13	NM_052933	exon8	c.G760T	p.G254W	TCTCCCCGGGCGC	.	191.0	8.0	282.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
PKN3	29941	hgsc.bcm.edu	hg19	9	131482023	131482023	+	Silent	SNP	C	C	A	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	PKN3	NM_013355	exon19	c.C2184A	p.P728P	GGCTCCCGAGGTG	.	195.0	8.0	284.0	0.0	.	62	.	.	.	none	.	.	PASS	Atlas-SNP
ITGA8	8516	hgsc.bcm.edu	hg19	10	15688933	15688933	+	Silent	SNP	G	G	A	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	ITGA8	NM_003638	exon12	c.C1119T	p.D373D	CTGGGGGTCTCTG	.	106.0	21.0	130.0	0.0	.	230	.	.	.	none	.	.	PASS	Atlas-SNP
CUBN	8029	hgsc.bcm.edu	hg19	10	16916468	16916468	+	Silent	SNP	G	G	T	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	CUBN	NM_001081	exon58	c.C9141A	p.I3047I	TGTGATGATTCCA	.	89.0	24.0	101.0	0.0	.	515	.	.	.	none	.	.	PASS	Atlas-SNP
UBTD1	80019	hgsc.bcm.edu	hg19	10	99327795	99327795	+	Silent	SNP	G	G	A	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	UBTD1	NM_024954	exon2	c.G195A	p.K65K	CCGCAAGGAGATC	.	155.0	24.0	195.0	0.0	.	19	.	.	.	none	.	.	PASS	Atlas-SNP
TCF7L2	6934	hgsc.bcm.edu	hg19	10	114912175	114912175	+	Silent	SNP	C	C	A	rs149820593	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	TCF7L2	NM_001146283	exon11	c.C1317A	p.P439P	GTACCCCGGCTGG	.	204.0	9.0	258.0	0.0	.	298	.	.	.	alt	C|1.000;T|0.000	.	PASS	Atlas-SNP
CNIH2	254263	hgsc.bcm.edu	hg19	11	66049735	66049735	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	CNIH2	NM_182553	exon2	c.A87G	p.I29M	GATCATAGCCTTT	.	42.0	10.0	86.0	0.0	.	15	.	.	.	none	.	.	PASS	Atlas-SNP
EXPH5	23086	hgsc.bcm.edu	hg19	11	108380880	108380880	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	EXPH5	NM_015065	exon6	c.G5354A	p.W1785X	GGTTCCCACTCCA	.	107.0	46.0	188.0	0.0	.	193	.	.	.	none	.	.	PASS	Atlas-SNP
NCAPD2	9918	hgsc.bcm.edu	hg19	12	6637024	6637024	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	NCAPD2,NS,carcinoma,0,1	NCAPD2	NM_014865	exon23	c.C2989A	p.R997S	CTAATCCGTGGCA	.	224.0	9.0	238.0	0.0	.	99	.	.	.	none	.	.	PASS	Atlas-SNP
OR4N4	283694	hgsc.bcm.edu	hg19	15	22382930	22382930	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	OR4N4	NM_001005241	exon1	c.T458C	p.F153S	GGGGTTTTGTCCA	.	312.0	41.0	432.0	0.0	.	108	.	.	.	none	.	.	PASS	Atlas-SNP
HERC1	8925	hgsc.bcm.edu	hg19	15	63955402	63955402	+	Silent	SNP	C	C	A	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	HERC1	NM_003922	exon44	c.G8682T	p.A2894A	TAATCCCGCTCAG	.	228.0	10.0	297.0	0.0	.	624	.	.	.	none	.	.	PASS	Atlas-SNP
SMG1	23049	hgsc.bcm.edu	hg19	16	18856756	18856756	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	SMG1	NM_015092	exon39	c.A6214G	p.K2072E	CCTCTTTAAATGG	.	62.0	33.0	58.0	0.0	.	401	.	.	.	none	.	.	PASS	Atlas-SNP
PDILT	204474	hgsc.bcm.edu	hg19	16	20376785	20376785	+	Silent	SNP	G	G	A	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	PDILT	NM_174924	exon9	c.C1194T	p.N398N	GACTACGTTGAAG	.	163.0	39.0	176.0	0.0	.	120	.	.	.	none	.	.	PASS	Atlas-SNP
AXIN2	8313	hgsc.bcm.edu	hg19	17	63533065	63533065	+	Missense_Mutation	SNP	C	C	A	rs376248072	alternate_allele	TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	AXIN2,NS,carcinoma,0,1	AXIN2	NM_004655	exon7	c.G1829T	p.R610L	TCCTCCCGGGGAA	.	166.0	8.0	177.0	0.0	.	92	.	.	.	alt	.	.	PASS	Atlas-SNP
SLC26A11	284129	hgsc.bcm.edu	hg19	17	78219988	78219988	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	SLC26A11,colon,carcinoma,0,1	SLC26A11	NM_173626	exon12	c.C1133A	p.P378Q	GCACCCCGGCGGG	.	223.0	11.0	232.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
SYT5	6861	hgsc.bcm.edu	hg19	19	55685920	55685920	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	SYT5	NM_003180	exon8	c.G925A	p.A309T	TGAAAGCTTCGTT	.	248.0	62.0	282.0	0.0	.	45	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF549	256051	hgsc.bcm.edu	hg19	19	58049607	58049607	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	ZNF549	NM_001199295	exon4	c.C1235G	p.T412R	TCCACACGGGAGA	.	49.0	8.0	97.0	0.0	.	118	.	.	.	none	.	.	PASS	Atlas-SNP
ZIK1	284307	hgsc.bcm.edu	hg19	19	58101980	58101980	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	ZIK1	NM_001010879	exon4	c.G801C	p.W267C	GCCTTGGGAGTGC	.	63.0	11.0	78.0	0.0	.	94	.	.	.	none	.	.	PASS	Atlas-SNP
USP25	29761	hgsc.bcm.edu	hg19	21	17138432	17138432	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	USP25	NM_013396	exon3	c.C240G	p.Y80X	TAGATACATCAGT	.	97.0	4.0	80.0	0.0	.	156	.	.	.	none	.	.	PASS	Atlas-SNP
RBBP7	5931	hgsc.bcm.edu	hg19	X	16864059	16864059	+	Silent	SNP	A	A	G	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	RBBP7	NM_001198719	exon11	c.T1233C	p.F411F	ATGAATAAACTGT	.	70.0	20.0	69.0	0.0	.	58	.	.	.	none	.	.	PASS	Atlas-SNP
ARHGEF6	9459	hgsc.bcm.edu	hg19	X	135825892	135825892	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	ARHGEF6	NM_004840	exon5	c.T513A	p.F171L	CTGCTTAAAGTTG	.	171.0	50.0	189.0	0.0	.	111	.	.	.	none	.	.	PASS	Atlas-SNP
ATE1	11101	hgsc.bcm.edu	hg19	10	123658376	123658376	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	ATE1	NM_007041	exon7	c.923delA	p.D308fs	.	.	73.0	11.0	82.0	0.0	.	67	.	0.150685	0	none	.	.	PASS	Atlas-INDEL