Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
TPRG1L	127262	hgsc.bcm.edu	hg19	1	3544177	3544177	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	TPRG1L	NM_182752	exon4	c.C584A	p.P195Q	AACACCCGATGGC	.	255.0	12.0	289.0	0.0	.	24	.	.	.	none	.	.	PASS	Atlas-SNP
CC2D1B	200014	hgsc.bcm.edu	hg19	1	52819228	52819228	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	CC2D1B	NM_032449	exon24	c.C2540G	p.T847S	TTCTCAGTGACCA	.	46.0	22.0	48.0	0.0	.	73	.	.	.	none	.	.	PASS	Atlas-SNP
DPYD	1806	hgsc.bcm.edu	hg19	1	98058809	98058809	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	DPYD	NM_000110	exon10	c.A1093T	p.K365X	AGCCTTTTCTGAA	.	140.0	53.0	116.0	0.0	.	219	.	.	.	none	.	.	PASS	Atlas-SNP
RHBG	57127	hgsc.bcm.edu	hg19	1	156347130	156347130	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	RHBG	NM_020407	exon2	c.G226C	p.G76R	GGCTTTGGCTTCC	.	147.0	47.0	207.0	0.0	.	133	.	.	.	none	.	.	PASS	Atlas-SNP
ADAM17	6868	hgsc.bcm.edu	hg19	2	9645412	9645412	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	ADAM17	NM_003183	exon12	c.A1427C	p.K476T	CAAACTTTATTGC	.	154.0	72.0	120.0	0.0	.	61	.	.	.	none	.	.	PASS	Atlas-SNP
APOB	338	hgsc.bcm.edu	hg19	2	21260848	21260848	+	Silent	SNP	G	G	A	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	APOB	NM_000384	exon5	c.C519T	p.A173A	TTGCTTGGCTTCT	.	173.0	94.0	140.0	0.0	.	761	.	.	.	none	.	.	PASS	Atlas-SNP
ATAD2B	54454	hgsc.bcm.edu	hg19	2	24051776	24051776	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	ATAD2B	NM_001242338	exon15	c.G1762T	p.D588Y	TCCAGTCCCTGGT	.	138.0	59.0	97.0	0.0	.	110	.	.	.	none	.	.	PASS	Atlas-SNP
AGBL5	60509	hgsc.bcm.edu	hg19	2	27291539	27291539	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	AGBL5	NM_021831	exon13	c.A2282G	p.E761G	AACCAGAGGCTGT	.	180.0	52.0	117.0	0.0	.	126	.	.	.	none	.	.	PASS	Atlas-SNP
SLC4A5	57835	hgsc.bcm.edu	hg19	2	74458396	74458396	+	Silent	SNP	C	C	A	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	SLC4A5	NM_021196	exon20	c.G2814T	p.T938T	GATTCCCGTCAGG	.	137.0	11.0	97.0	0.0	.	215	.	.	.	none	.	.	PASS	Atlas-SNP
SEMA4F	10505	hgsc.bcm.edu	hg19	2	74906851	74906851	+	Silent	SNP	C	C	A	rs367999393	alternate_allele	TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	SEMA4F	NM_004263	exon14	c.C1828A	p.R610R	ACCCCCCGGCGGG	.	143.0	10.0	149.0	0.0	.	89	.	.	.	alt	.	.	PASS	Atlas-SNP
SNRNP200	23020	hgsc.bcm.edu	hg19	2	96953697	96953697	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	SNRNP200	NM_014014	exon25	c.G3269T	p.R1090L	ATCAACCGGCCAG	.	191.0	9.0	170.0	0.0	.	195	.	.	.	none	.	.	PASS	Atlas-SNP
NEB	4703	hgsc.bcm.edu	hg19	2	152522655	152522655	+	Silent	SNP	G	G	T	rs142074817	bycluster;by1000genomes;alternate_allele	TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	NEB	NM_004543	exon41	c.C4980A	p.P1660P	GGCATCGGGCAGG	.	248.0	10.0	227.0	0.0	.	1697	.	.	.	alt	G|0.998;A|0.002	.	PASS	Atlas-SNP
FRZB	2487	hgsc.bcm.edu	hg19	2	183699593	183699593	+	Silent	SNP	G	G	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	FRZB	NM_001463	exon6	c.C961A	p.R321R	CTTGCCGGGGGTT	.	156.0	9.0	93.0	0.0	.	42	.	.	.	none	.	.	PASS	Atlas-SNP
FAM171B	165215	hgsc.bcm.edu	hg19	2	187627072	187627072	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	FAM171B,NS,carcinoma,0,2	FAM171B	NM_177454	exon8	c.C2003A	p.P668Q	CCTCCCCGCATCC	.	212.0	11.0	166.0	0.0	.	146	.	.	.	none	.	.	PASS	Atlas-SNP
UNC80	285175	hgsc.bcm.edu	hg19	2	210640757	210640757	+	Silent	SNP	C	C	A	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	UNC80	NM_182587	exon3	c.C286A	p.R96R	TCAAACCGAAACA	.	245.0	10.0	197.0	0.0	.	280	.	.	.	none	.	.	PASS	Atlas-SNP
TNS1	7145	hgsc.bcm.edu	hg19	2	218713795	218713795	+	Missense_Mutation	SNP	G	G	A	rs200862766	bycluster	TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	TNS1	NM_022648	exon17	c.C1070T	p.T357M	CCCTGCGTGTGTC	.	198.0	38.0	189.0	0.0	.	251	.	.	.	weak	G|0.999;A|0.001	0.001	PASS	Atlas-SNP
UGT1A5	54579	hgsc.bcm.edu	hg19	2	234622277	234622277	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	UGT1A5,NS,carcinoma,0,1	UGT1A5	NM_019078	exon1	c.A640G	p.M214V	AAGAACATGCTCT	.	368.0	195.0	352.0	1.0	.	66	.	.	.	none	.	.	PASS	Atlas-SNP
D2HGDH	728294	hgsc.bcm.edu	hg19	2	242695394	242695394	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	D2HGDH,NS,malignant_melanoma,0,1	D2HGDH	NM_152783	exon9	c.C1271A	p.P424Q	TCGGCCCGCACGC	.	132.0	7.0	107.0	0.0	.	39	.	.	.	none	.	.	PASS	Atlas-SNP
SYNPR	132204	hgsc.bcm.edu	hg19	3	63466530	63466530	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	SYNPR	NM_001130003	exon3	c.C107T	p.A36V	CATTTGCAACATG	.	239.0	94.0	280.0	1.0	.	38	.	.	.	none	.	.	PASS	Atlas-SNP
P2RY1	5028	hgsc.bcm.edu	hg19	3	152553966	152553966	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	P2RY1	NM_002563	exon1	c.A395G	p.H132R	TCTTTCATGTGAA	.	100.0	34.0	85.0	0.0	.	49	.	.	.	none	.	.	PASS	Atlas-SNP
SH3TC1	54436	hgsc.bcm.edu	hg19	4	8230107	8230107	+	Silent	SNP	C	C	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	SH3TC1	NM_018986	exon12	c.C2686T	p.L896L	CGGGACCTGGGCC	.	116.0	57.0	102.0	0.0	.	105	.	.	.	none	.	.	PASS	Atlas-SNP
ACOX3	8310	hgsc.bcm.edu	hg19	4	8368755	8368755	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	ACOX3	NM_003501	exon18	c.G2036T	p.R679L	GATGCCCGCTCCA	.	128.0	8.0	93.0	0.0	.	70	.	.	.	none	.	.	PASS	Atlas-SNP
LAP3	51056	hgsc.bcm.edu	hg19	4	17586652	17586652	+	Silent	SNP	A	A	G	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	LAP3	NM_015907	exon6	c.A597G	p.A199A	CTTGGCACGCCAA	.	89.0	23.0	66.0	0.0	.	50	.	.	.	none	.	.	PASS	Atlas-SNP
LAP3	51056	hgsc.bcm.edu	hg19	4	17586653	17586653	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	LAP3,NS,carcinoma,0,1	LAP3	NM_015907	exon6	c.C598A	p.R200S	TTGGCACGCCAAT	.	91.0	24.0	69.0	1.0	.	50	.	.	.	none	.	.	PASS	Atlas-SNP
CCDC110	256309	hgsc.bcm.edu	hg19	4	186382305	186382305	+	Silent	SNP	C	C	A	rs141194686	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	CCDC110,rectum,carcinoma,0,1	CCDC110	NM_152775	exon5	c.G246T	p.S82S	GATTTCCGACTGT	.	171.0	8.0	97.0	1.0	.	78	.	.	.	alt	C|0.999;T|0.001	.	PASS	Atlas-SNP
WDR70	55100	hgsc.bcm.edu	hg19	5	37381726	37381726	+	Silent	SNP	C	C	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	WDR70	NM_018034	exon3	c.C114T	p.D38D	ATTTGACTTGGAA	.	220.0	71.0	166.0	0.0	.	76	.	.	.	none	.	.	PASS	Atlas-SNP
SLCO4C1	353189	hgsc.bcm.edu	hg19	5	101599479	101599479	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	SLCO4C1	NM_180991	exon4	c.G808T	p.G270C	CATAACCGGTTCC	.	137.0	9.0	131.0	0.0	.	113	.	.	.	none	.	.	PASS	Atlas-SNP
PSD2	84249	hgsc.bcm.edu	hg19	5	139216448	139216448	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	PSD2	NM_032289	exon10	c.G1456T	p.G486W	AAGTTCGGGACAG	.	108.0	8.0	152.0	0.0	.	88	.	.	.	none	.	.	PASS	Atlas-SNP
APBB3	10307	hgsc.bcm.edu	hg19	5	139938231	139938231	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	APBB3,NS,carcinoma,0,1	APBB3	NM_006051	exon12	c.G1421T	p.R474L	ACACCCCGCTTTC	.	132.0	8.0	163.0	0.0	.	34	.	.	.	none	.	.	PASS	Atlas-SNP
MDGA1	266727	hgsc.bcm.edu	hg19	6	37622577	37622577	+	Silent	SNP	C	C	A	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	MDGA1,NS,carcinoma,0,2	MDGA1	NM_153487	exon5	c.G711T	p.T237T	TGTACCCGTGGTG	.	263.0	12.0	282.0	2.0	.	104	.	.	.	none	.	.	PASS	Atlas-SNP
TULP4	56995	hgsc.bcm.edu	hg19	6	158873218	158873218	+	Silent	SNP	C	C	A	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	TULP4	NM_020245	exon5	c.C777A	p.T259T	GCTCACCGTCAGC	.	153.0	7.0	169.0	0.0	.	137	.	.	.	none	.	.	PASS	Atlas-SNP
SLC13A1	6561	hgsc.bcm.edu	hg19	7	122765636	122765636	+	Silent	SNP	A	A	G	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	SLC13A1	NM_022444	exon11	c.T1227C	p.P409P	TCCTGTAGGTGTA	.	384.0	147.0	192.0	0.0	.	110	.	.	.	none	.	.	PASS	Atlas-SNP
AKR1B15	441282	hgsc.bcm.edu	hg19	7	134260255	134260255	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	AKR1B15	NM_001080538	exon7	c.G597T	p.L199F	GCTCTTGAACAAA	.	265.0	97.0	164.0	0.0	.	105	.	.	.	none	.	.	PASS	Atlas-SNP
BMP1	649	hgsc.bcm.edu	hg19	8	22058658	22058658	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	BMP1_ENST00000306349,NS,carcinoma,0,1	BMP1	NM_001199	exon16	c.G2135T	p.R712L	CCCCTCGGGGACG	.	165.0	7.0	221.0	2.0	.	131	.	.	.	none	.	.	PASS	Atlas-SNP
OXR1	55074	hgsc.bcm.edu	hg19	8	107718929	107718929	+	Silent	SNP	T	T	C	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	OXR1	NM_001198532	exon8	c.T1183C	p.L395L	GGTCACTTAAGAT	.	71.0	19.0	63.0	0.0	.	190	.	.	.	none	.	.	PASS	Atlas-SNP
COL22A1	169044	hgsc.bcm.edu	hg19	8	139737673	139737673	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	COL22A1,NS,carcinoma,0,1	COL22A1	NM_152888	exon24	c.G2150A	p.G717E	GGGGGTCCTGGAG	.	127.0	44.0	131.0	0.0	.	390	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA0020	9933	hgsc.bcm.edu	hg19	9	2811557	2811557	+	Missense_Mutation	SNP	C	C	A	rs2270889	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	KIAA0020	NM_014878	exon15	c.G1439T	p.R480L	AGCTCCCGTCTGC	.	140.0	7.0	150.0	0.0	.	56	.	.	.	alt	C|0.996;T|0.004	.	PASS	Atlas-SNP
ADD3	120	hgsc.bcm.edu	hg19	10	111860443	111860443	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	ADD3	NM_001121	exon2	c.C32G	p.T11S	TGATTACCACTCC	.	72.0	28.0	77.0	0.0	.	89	.	.	.	none	.	.	PASS	Atlas-SNP
MRVI1	10335	hgsc.bcm.edu	hg19	11	10647666	10647666	+	Silent	SNP	C	C	G	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	MRVI1	NM_130385	exon9	c.G1215C	p.R405R	CTGCAGCCGGGGG	.	30.0	11.0	42.0	0.0	.	113	.	.	.	none	.	.	PASS	Atlas-SNP
HPS5	11234	hgsc.bcm.edu	hg19	11	18309441	18309441	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	HPS5	NM_181507	exon17	c.C2560T	p.R854W	CTTACCGGGTAGC	.	53.0	24.0	53.0	0.0	.	70	.	.	.	none	.	.	PASS	Atlas-SNP
OR5M8	219484	hgsc.bcm.edu	hg19	11	56258788	56258788	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	OR5M8,caecum,carcinoma,0,1	OR5M8	NM_001005282	exon1	c.G59T	p.R20L	AATTCCCGGCGAC	.	131.0	7.0	134.0	1.0	.	74	.	.	.	none	.	.	PASS	Atlas-SNP
NPAT	4863	hgsc.bcm.edu	hg19	11	108032024	108032024	+	Silent	SNP	A	A	G	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	NPAT	NM_002519	exon17	c.T3789C	p.S1263S	TAAATCACTACTA	.	132.0	54.0	164.0	0.0	.	124	.	.	.	none	.	.	PASS	Atlas-SNP
IGSF9B	22997	hgsc.bcm.edu	hg19	11	133790126	133790126	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	IGSF9B	NM_014987	exon18	c.G3494T	p.G1165V	TCCAGGCCAAATG	.	99.0	39.0	108.0	0.0	.	290	.	.	.	none	.	.	PASS	Atlas-SNP
IGSF9B	22997	hgsc.bcm.edu	hg19	11	133794760	133794760	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	IGSF9B	NM_014987	exon15	c.G2074A	p.D692N	TCAGATCCTGCAT	.	174.0	55.0	239.0	0.0	.	290	.	.	.	none	.	.	PASS	Atlas-SNP
NACA	4666	hgsc.bcm.edu	hg19	12	57114205	57114205	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	NACA_ENST00000550952,NS,carcinoma,0,2	NACA	NM_001113203	exon3	c.C1109T	p.T370I	GCCACAGTAGCAG	.	46.0	27.0	42.0	0.0	.	131	.	.	.	none	.	.	PASS	Atlas-SNP
MBD6	114785	hgsc.bcm.edu	hg19	12	57918527	57918527	+	Silent	SNP	C	C	A	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	MBD6	NM_052897	exon4	c.C138A	p.S46S	GTCTTCCTTGGAG	.	132.0	45.0	106.0	0.0	.	99	.	.	.	none	.	.	PASS	Atlas-SNP
CCDC70	83446	hgsc.bcm.edu	hg19	13	52439890	52439890	+	Missense_Mutation	SNP	C	C	A	rs17076052	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	CCDC70	NM_031290	exon2	c.C376A	p.R126S	AAGTACCGCACTT	.	286.0	14.0	236.0	0.0	.	31	.	.	.	alt	C|0.927;T|0.073	.	PASS	Atlas-SNP
UBR1	197131	hgsc.bcm.edu	hg19	15	43299382	43299382	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	UBR1	NM_174916	exon30	c.G3310A	p.E1104K	CCTGTTCTTCTTG	.	137.0	49.0	121.0	0.0	.	124	.	.	.	none	.	.	PASS	Atlas-SNP
PKD1	5310	hgsc.bcm.edu	hg19	16	2155892	2155892	+	Silent	SNP	A	A	G	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	PKD1,NS,carcinoma,0,1	PKD1	NM_000296	exon20	c.T7837C	p.L2613L	GGGCCAACGAGTA	.	36.0	4.0	44.0	0.0	.	184	.	.	.	none	.	.	PASS	Atlas-SNP
ZFHX3	463	hgsc.bcm.edu	hg19	16	72992635	72992635	+	Silent	SNP	T	T	C	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	ZFHX3	NM_006885	exon2	c.A1410G	p.E470E	CGCCTCTTCCTCC	.	36.0	4.0	61.0	0.0	.	404	.	.	.	none	.	.	PASS	Atlas-SNP
ZFHX3	463	hgsc.bcm.edu	hg19	16	72992638	72992638	+	Silent	SNP	C	C	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	ZFHX3	NM_006885	exon2	c.G1407A	p.E469E	CTCTTCCTCCTCC	.	38.0	9.0	59.0	0.0	.	404	.	.	.	none	.	.	PASS	Atlas-SNP
METTL16	79066	hgsc.bcm.edu	hg19	17	2323643	2323643	+	Missense_Mutation	SNP	C	C	A	rs201182820	alternate_allele	TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	METTL16	NM_024086	exon10	c.G1310T	p.R437L	CCTTCCCGCAGAG	.	247.0	10.0	197.0	0.0	.	75	.	.	.	alt	C|0.999;T|0.001	.	PASS	Atlas-SNP
RAP1GAP2	23108	hgsc.bcm.edu	hg19	17	2898695	2898695	+	Silent	SNP	C	C	A	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	RAP1GAP2	NM_015085	exon13	c.C979A	p.R327R	ACATTCCGGGACA	.	314.0	13.0	285.0	0.0	.	90	.	.	.	none	.	.	PASS	Atlas-SNP
MPRIP	23164	hgsc.bcm.edu	hg19	17	17030034	17030034	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	MPRIP	NM_015134	exon4	c.G286A	p.G96S	CCTCAGGGCACCA	.	127.0	36.0	96.0	0.0	.	87	.	.	.	none	.	.	PASS	Atlas-SNP
PHF12	57649	hgsc.bcm.edu	hg19	17	27251080	27251080	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	PHF12	NM_020889	exon4	c.A562T	p.I188F	CGTCAATGATGTC	.	89.0	51.0	63.0	0.0	.	69	.	.	.	none	.	.	PASS	Atlas-SNP
GJC1	10052	hgsc.bcm.edu	hg19	17	42882624	42882624	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	GJC1	NM_005497	exon3	c.G562C	p.E188Q	CCACCTCAAACAC	.	358.0	131.0	219.0	0.0	.	45	.	.	.	none	.	.	PASS	Atlas-SNP
SAMD14	201191	hgsc.bcm.edu	hg19	17	48190273	48190273	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	SAMD14	NM_174920	exon11	c.A1322C	p.E441A	TTGGCCTCCTGCT	.	133.0	51.0	102.0	0.0	.	36	.	.	.	none	.	.	PASS	Atlas-SNP
CACNA1G	8913	hgsc.bcm.edu	hg19	17	48669448	48669448	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	CACNA1G	NM_001256360	exon13	c.G2905A	p.A969T	TTCCAGGCGGAGG	.	96.0	40.0	59.0	0.0	.	659	.	.	.	none	.	.	PASS	Atlas-SNP
TNRC6C	57690	hgsc.bcm.edu	hg19	17	76045567	76045567	+	Missense_Mutation	SNP	G	G	T	rs143335497	bycluster;by1000genomes;alternate_allele	TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	TNRC6C	NM_018996	exon4	c.G424T	p.G142W	CAGAACGGGAACC	.	151.0	9.0	108.0	0.0	.	173	.	.	.	alt	G|0.999;A|0.001	.	PASS	Atlas-SNP
TBC1D16	125058	hgsc.bcm.edu	hg19	17	77922704	77922704	+	Missense_Mutation	SNP	C	C	A	rs181752232	bycluster;by1000genomes;alternate_allele	TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	TBC1D16	NM_019020	exon8	c.G1508T	p.R503L	TCCCCCCGGAAGA	.	219.0	11.0	140.0	0.0	.	48	.	.	.	alt	C|0.999;G|0.001	.	PASS	Atlas-SNP
DYM	54808	hgsc.bcm.edu	hg19	18	46645145	46645145	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	DYM	NM_017653	exon15	c.C1715T	p.S572L	TGAAATGAAGGAT	.	70.0	22.0	63.0	0.0	.	52	.	.	.	none	.	.	PASS	Atlas-SNP
SSBP4	170463	hgsc.bcm.edu	hg19	19	18538728	18538728	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	SSBP4	NM_001009998	exon4	c.G215A	p.C72Y	TGTACTGCGCGGC	.	107.0	40.0	163.0	0.0	.	19	.	.	.	none	.	.	PASS	Atlas-SNP
SLC25A42	284439	hgsc.bcm.edu	hg19	19	19218750	19218750	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	SLC25A42	NM_178526	exon7	c.G545T	p.G182V	AAGAGGGGCTGAA	.	134.0	51.0	139.0	0.0	.	18	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF254	9534	hgsc.bcm.edu	hg19	19	24310237	24310237	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	ZNF254	NM_203282	exon4	c.A1435T	p.R479X	CTAACTAGACATA	.	74.0	21.0	107.0	0.0	.	88	.	.	.	none	.	.	PASS	Atlas-SNP
SPINT2	10653	hgsc.bcm.edu	hg19	19	38774304	38774304	+	Silent	SNP	G	G	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	SPINT2	NM_021102	exon2	c.G144T	p.R48R	ATGCCGGGCCTCC	.	208.0	55.0	211.0	0.0	.	17	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF471	57573	hgsc.bcm.edu	hg19	19	57037032	57037032	+	Silent	SNP	A	A	G	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	ZNF471	NM_020813	exon5	c.A1596G	p.Q532Q	TGCCCAACATCAG	.	121.0	40.0	152.0	0.0	.	99	.	.	.	none	.	.	PASS	Atlas-SNP
BPIFA2	140683	hgsc.bcm.edu	hg19	20	31761923	31761923	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	.	NM_080574	exon4	c.C341T	p.A114V	TCAAAGCTGAACC	.	136.0	38.0	119.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
GNAS	2778	hgsc.bcm.edu	hg19	20	57415512	57415512	+	Silent	SNP	C	C	A	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	GNAS	NM_016592	exon1	c.C351A	p.S117S	CGAGTCCGAAATC	.	133.0	7.0	142.0	0.0	.	867	.	.	.	none	.	.	PASS	Atlas-SNP
MX1	4599	hgsc.bcm.edu	hg19	21	42807881	42807881	+	Missense_Mutation	SNP	G	G	A	rs150271063	bycluster	TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	MX1	NM_001144925	exon8	c.G223A	p.V75I	ATCGCCGTCATCG	.	101.0	40.0	132.0	0.0	.	58	.	.	.	weak	G|1.000;A|0.000	0.000	PASS	Atlas-SNP
UBR3	130507	hgsc.bcm.edu	hg19	2	170843280	170843281	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	UBR3	NM_172070	exon25	c.3760_3761insT	p.V1254fs	.	.	136.0	32.0	85.0	0.0	.	182	.	0.235294	0	none	.	.	PASS	Atlas-INDEL
TPD52	7163	hgsc.bcm.edu	hg19	8	80963849	80963851	+	In_Frame_Del	DEL	GAT	GAT	-	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	GAT	GAT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	TPD52	NM_001025252	exon4	c.418_420del	p.140_140del	.	.	75.0	26.0	74.0	0.0	.	40	.	0.346667	0	none	.	.	PASS	Atlas-INDEL
ITSN2	50618	hgsc.bcm.edu	hg19	2	24509153	24509155	+	In_Frame_Del	DEL	TTC	TTC	-	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	TTC	TTC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	ITSN2	NM_006277	exon16	c.1790_1792del	p.597_598del	.	.	120.0	24.0	67.0	0.0	.	224	.	0.2	0	none	.	.	PASS	Atlas-INDEL
TOPBP1	11073	hgsc.bcm.edu	hg19	3	133329894	133329895	+	Frame_Shift_Ins	INS	-	-	CT	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	TOPBP1	NM_007027	exon25	c.4127_4128insAG	p.R1376fs	.	.	249.0	88.0	230.0	0.0	.	218	.	0.353414	0	none	.	.	PASS	Atlas-INDEL
USHBP1	83878	hgsc.bcm.edu	hg19	19	17370111	17370111	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	USHBP1	NM_031941	exon7	c.1034delC	p.A345fs	.	.	41.0	12.0	50.0	0.0	.	85	.	0.292683	0	none	.	.	PASS	Atlas-INDEL
MYCN	4613	hgsc.bcm.edu	hg19	2	16082320	16082321	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	MYCN	NM_005378	exon2	c.134_135insG	p.P45fs	.	.	49.0	23.0	47.0	0.0	.	63	.	0.469388	0	none	.	.	PASS	Atlas-INDEL
NDUFS1	4719	hgsc.bcm.edu	hg19	2	207006722	207006724	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	NDUFS1	NM_001199984	exon12	c.1246_1248del	p.416_416del	.	.	138.0	21.0	101.0	0.0	.	82	.	0.152174	0	none	.	.	PASS	Atlas-INDEL