Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm PTAFR 5724 hgsc.bcm.edu hg19 1 28477260 28477260 + Silent SNP G G A rs146920734 TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . PTAFR NM_001164723 exon3 c.C273T p.N91N AGCCACGTTGCAC . 82.0 29.0 123.0 0.0 . 30 . . . weak G|1.000;A|0.000 0.000 PASS Atlas-SNP MECR 51102 hgsc.bcm.edu hg19 1 29520539 29520539 + Missense_Mutation SNP T T A novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . MECR NM_016011 exon10 c.A1117T p.M373L ATCACATGGTGAG . 100.0 34.0 138.0 0.0 . 31 . . . none . . PASS Atlas-SNP CDCA8 55143 hgsc.bcm.edu hg19 1 38174030 38174030 + Missense_Mutation SNP C C T novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . CDCA8 NM_001256875 exon10 c.C835T p.H279Y CGGACCCACAAAT . 67.0 16.0 88.0 0.0 . 25 . . . none . . PASS Atlas-SNP LRRC40 55631 hgsc.bcm.edu hg19 1 70671136 70671136 + Missense_Mutation SNP C C G novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . LRRC40 NM_017768 exon1 c.G88C p.G30R ACAGCCCTTGGGG . 82.0 8.0 107.0 0.0 . 66 . . . none . . PASS Atlas-SNP OR6K2 81448 hgsc.bcm.edu hg19 1 158669896 158669896 + Missense_Mutation SNP C C T novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . OR6K2 NM_001005279 exon1 c.G547A p.V183M GCAGCACTGGGAG . 105.0 35.0 132.0 0.0 . 104 . . . none . . PASS Atlas-SNP PAPPA2 60676 hgsc.bcm.edu hg19 1 176740277 176740277 + Missense_Mutation SNP G G T novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . PAPPA2 NM_020318 exon17 c.G4676T p.G1559V AACCAGGGTACTA . 75.0 18.0 120.0 0.0 . 665 . . . none . . PASS Atlas-SNP FAM5B 57795 hgsc.bcm.edu hg19 1 177250648 177250648 + Missense_Mutation SNP G G A novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . FAM5B NM_021165 exon8 c.G2336A p.G779D AGACCGGCAAACT . 118.0 5.0 139.0 0.0 . 191 . . . none . . PASS Atlas-SNP CFHR3 10878 hgsc.bcm.edu hg19 1 196762616 196762616 + Silent SNP G G T rs149081467 byfrequency;alternate_allele TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . CFHR3 NM_021023 exon6 c.G966T p.G322G GGAAGGGATAGTG . 124.0 9.0 140.0 0.0 . 52 . . . alt G|0.998;C|0.002 . PASS Atlas-SNP CFHR3 10878 hgsc.bcm.edu hg19 1 196762617 196762617 + Missense_Mutation SNP A A T novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . CFHR3 NM_021023 exon6 c.A967T p.I323L GAAGGGATAGTGG . 124.0 9.0 140.0 0.0 . 52 . . . none . . PASS Atlas-SNP STK36 27148 hgsc.bcm.edu hg19 2 219556970 219556970 + Silent SNP C C G novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . STK36 NM_015690 exon15 c.C1869G p.L623L TGGGCTCCTTCAT . 133.0 70.0 110.0 0.0 . 111 . . . none . . PASS Atlas-SNP ECEL1 9427 hgsc.bcm.edu hg19 2 233350797 233350797 + Silent SNP G G A novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . ECEL1 NM_004826 exon2 c.C567T p.D189D GCGCATGTCGAGG . 29.0 7.0 15.0 0.0 . 73 . . . none . . PASS Atlas-SNP JAGN1 84522 hgsc.bcm.edu hg19 3 9934676 9934676 + Missense_Mutation SNP G G A novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . JAGN1 NM_032492 exon2 c.G167A p.S56N AGATGAGCGTGGG . 79.0 20.0 86.0 0.0 . 18 . . . none . . PASS Atlas-SNP APEH 327 hgsc.bcm.edu hg19 3 49720689 49720689 + Missense_Mutation SNP A A G novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . APEH NM_001640 exon22 c.A2113G p.S705G CCCAAAAGCACCC . 353.0 63.0 332.0 0.0 . 45 . . . none . . PASS Atlas-SNP ACY1 95 hgsc.bcm.edu hg19 3 52022538 52022538 + Splice_Site SNP A A C novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . ACY1 NM_001198898 exon12 c.817-2A>C . TCCCTCAGAAGTG . 74.0 17.0 72.0 0.0 . 35 . . . none . . PASS Atlas-SNP STAB1 23166 hgsc.bcm.edu hg19 3 52554291 52554291 + Nonsense_Mutation SNP C C A novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . STAB1 NM_015136 exon52 c.C5484A p.C1828X CTCCTGCAGCCGA . 160.0 17.0 165.0 0.0 . 178 . . . none . . PASS Atlas-SNP MYH15 22989 hgsc.bcm.edu hg19 3 108110610 108110610 + Silent SNP G G A novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . MYH15 NM_014981 exon38 c.C5487T p.S1829S TACCCTGGATTCT . 213.0 38.0 207.0 0.0 . 223 . . . none . . PASS Atlas-SNP FAM162A 26355 hgsc.bcm.edu hg19 3 122128621 122128621 + Silent SNP C C T novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . FAM162A NM_014367 exon5 c.C408T p.N136N CTTGAACTTAGAA . 126.0 55.0 150.0 0.0 . 18 . . . none . . PASS Atlas-SNP ATR 545 hgsc.bcm.edu hg19 3 142238533 142238533 + Silent SNP G G A novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . ATR NM_001184 exon24 c.C4360T p.L1454L GTTCTAGTATTTC . 152.0 32.0 170.0 0.0 . 285 . . . none . . PASS Atlas-SNP EHMT2 10919 hgsc.bcm.edu hg19 6 31864742 31864742 + Missense_Mutation SNP C C A novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . EHMT2 NM_025256 exon2 c.G67T p.A23S GCAGCGCCCCCAT . 137.0 37.0 202.0 0.0 . 45 . . . none . . PASS Atlas-SNP BRD2 6046 hgsc.bcm.edu hg19 6 32945266 32945266 + Silent SNP T T C novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . BRD2 NM_005104 exon8 c.T1248C p.A416A TGCTGCTGATGTA . 158.0 41.0 228.0 0.0 . 70 . . . none . . PASS Atlas-SNP DNAH8 1769 hgsc.bcm.edu hg19 6 38913344 38913344 + Missense_Mutation SNP T T C novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . DNAH8 NM_001206927 exon80 c.T12109C p.F4037L CCACAATTTGCAG . 114.0 35.0 134.0 0.0 . 1239 . . . none . . PASS Atlas-SNP SLC35B2 347734 hgsc.bcm.edu hg19 6 44224125 44224125 + Missense_Mutation SNP G G C novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . SLC35B2 NM_178148 exon3 c.C314G p.P105R CACATCGGGGTGG . 98.0 30.0 144.0 0.0 . 40 . . . none . . PASS Atlas-SNP MOXD1 26002 hgsc.bcm.edu hg19 6 132694134 132694134 + Missense_Mutation SNP A A C novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . MOXD1 NM_015529 exon3 c.T414G p.D138E AGTGCTATCCTGG . 103.0 31.0 120.0 0.0 . 136 . . . none . . PASS Atlas-SNP TXLNB 167838 hgsc.bcm.edu hg19 6 139563747 139563747 + Silent SNP T T C novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . TXLNB NM_153235 exon10 c.A1971G p.A657A TGCTGCTGCTCGT . 131.0 42.0 142.0 0.0 . 96 . . . none . . PASS Atlas-SNP HOXA10 3206 hgsc.bcm.edu hg19 7 27211695 27211695 + Silent SNP C C T novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . HOXA10 NM_018951 exon2 c.G1056A p.E352E CTCCTTCTCCAGC . 182.0 80.0 130.0 0.0 . 55 . . . none . . PASS Atlas-SNP NRG1 3084 hgsc.bcm.edu hg19 8 32463201 32463201 + Missense_Mutation SNP G G A rs78513616 bycluster TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . NRG1 NM_013962 exon3 c.G1045A p.A349T TCAAACGGTAAGA . 123.0 21.0 161.0 0.0 . 260 . . . weak G|1.000;A|0.000 0.000 PASS Atlas-SNP GPR124 25960 hgsc.bcm.edu hg19 8 37692907 37692907 + Missense_Mutation SNP C C G novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . GPR124 NM_032777 exon12 c.C1824G p.F608L GTCCTTCCACATC . 29.0 11.0 30.0 0.0 . 85 . . . none . . PASS Atlas-SNP GAPVD1 26130 hgsc.bcm.edu hg19 9 128121733 128121733 + Missense_Mutation SNP G G A rs374403416 TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . GAPVD1 NM_015635 exon25 c.G4087A p.V1363I TCTAAAGTAGTGA . 158.0 35.0 145.0 0.0 . 124 . . . weak . . PASS Atlas-SNP OLAH 55301 hgsc.bcm.edu hg19 10 15107661 15107661 + Missense_Mutation SNP G G A novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . OLAH NM_018324 exon7 c.G640A p.G214S TTTGGAGGCACCC . 62.0 17.0 79.0 0.0 . 45 . . . none . . PASS Atlas-SNP SLC5A12 159963 hgsc.bcm.edu hg19 11 26725363 26725363 + Missense_Mutation SNP A A C novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . SLC5A12 NM_178498 exon5 c.T657G p.N219K AGATCCATTTGTT . 172.0 56.0 244.0 0.0 . 134 . . . none . . PASS Atlas-SNP LRFN4 78999 hgsc.bcm.edu hg19 11 66625625 66625625 + Missense_Mutation SNP C C T novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . LRFN4 NM_024036 exon1 c.C410T p.P137L TCGCGCCGGGAGC . 66.0 18.0 117.0 0.0 . 25 . . . none . . PASS Atlas-SNP LRP5 4041 hgsc.bcm.edu hg19 11 68205929 68205929 + Missense_Mutation SNP C C T novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . LRP5 NM_002335 exon20 c.C4127T p.P1376L AGCCGCCCTCAGA . 90.0 22.0 107.0 0.0 . 136 . . . none . . PASS Atlas-SNP OR8D1 283159 hgsc.bcm.edu hg19 11 124180474 124180474 + Silent SNP G G T novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . OR8D1 NM_001002917 exon1 c.C189A p.L63L GCTGCTGAGGAAA . 89.0 4.0 119.0 0.0 . 53 . . . none . . PASS Atlas-SNP MLL2 8085 hgsc.bcm.edu hg19 12 49433380 49433380 + Silent SNP C C G novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . MLL2 NM_003482 exon32 c.G8067C p.L2689L AATCAGCAGCTCT . 28.0 10.0 35.0 0.0 . 1173 . . . none . . PASS Atlas-SNP RPH3A 22895 hgsc.bcm.edu hg19 12 113306301 113306301 + Missense_Mutation SNP C C A novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . RPH3A NM_001143854 exon8 c.C511A p.P171T CCTATGCCTATAA . 63.0 13.0 55.0 0.0 . 98 . . . none . . PASS Atlas-SNP CCDC62 84660 hgsc.bcm.edu hg19 12 123286278 123286278 + Missense_Mutation SNP A A T novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . CCDC62 NM_201435 exon9 c.A1585T p.M529L GGCCACATGTCTG . 250.0 59.0 270.0 0.0 . 119 . . . none . . PASS Atlas-SNP SLC15A4 121260 hgsc.bcm.edu hg19 12 129283926 129283926 + Missense_Mutation SNP A A G novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . SLC15A4 NM_145648 exon7 c.T1451C p.M484T CTCTGCATGGACT . 95.0 36.0 107.0 0.0 . 41 . . . none . . PASS Atlas-SNP SLITRK1 114798 hgsc.bcm.edu hg19 13 84453895 84453895 + Missense_Mutation SNP G G A novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . SLITRK1 NM_052910 exon1 c.C1748T p.A583V ATCCTAGCGTACA . 35.0 9.0 36.0 0.0 . 196 . . . none . . PASS Atlas-SNP UBAC2 337867 hgsc.bcm.edu hg19 13 99890774 99890774 + Missense_Mutation SNP T T C novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . UBAC2 NM_177967 exon2 c.T250C p.C84R TCTTTGTGTATGA . 334.0 83.0 442.0 0.0 . 23 . . . none . . PASS Atlas-SNP BIVM-ERCC5 0 hgsc.bcm.edu hg19 13 103524734 103524734 + Silent SNP C C A rs150671111 alternate_allele TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . . NM_001204425 exon21 c.C4227A p.L1409L TGATCTCGACAAA . 52.0 4.0 60.0 0.0 . . . . . alt C|1.000;T|0.000 . PASS Atlas-SNP UBR1 197131 hgsc.bcm.edu hg19 15 43276106 43276106 + Missense_Mutation SNP C C G novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 UBR1,NS,carcinoma,0,1 UBR1 NM_174916 exon37 c.G4139C p.R1380P AGAAGACGAACCA . 41.0 2.0 40.0 0.0 . 124 . . . none . . PASS Atlas-SNP SCAMP2 10066 hgsc.bcm.edu hg19 15 75142970 75142970 + Missense_Mutation SNP A A T novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . SCAMP2 NM_005697 exon6 c.T517A p.W173R AGAACCAGGCCAG . 93.0 21.0 123.0 0.0 . 18 . . . none . . PASS Atlas-SNP ZSCAN2 54993 hgsc.bcm.edu hg19 15 85159554 85159554 + Missense_Mutation SNP G G A novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . ZSCAN2 NM_001007072 exon3 c.G421A p.V141I TCCTGCGTACATG . 65.0 22.0 81.0 0.0 . 43 . . . none . . PASS Atlas-SNP KIAA0556 23247 hgsc.bcm.edu hg19 16 27761006 27761006 + Missense_Mutation SNP T T A novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . KIAA0556 NM_015202 exon16 c.T2725A p.S909T GACCGCTCCCACC . 93.0 22.0 108.0 0.0 . 348 . . . none . . PASS Atlas-SNP SEZ6L2 26470 hgsc.bcm.edu hg19 16 29884867 29884867 + Missense_Mutation SNP T T A novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . SEZ6L2 NM_001243332 exon13 c.A2288T p.K763I GCGCATTTGGGGA . 61.0 12.0 78.0 0.0 . 137 . . . none . . PASS Atlas-SNP HEATR3 55027 hgsc.bcm.edu hg19 16 50104088 50104088 + Splice_Site SNP G G A novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . HEATR3 NM_182922 exon4 c.400-1G>A . GTTACAGTGTAGT . 60.0 31.0 68.0 0.0 . 59 . . . none . . PASS Atlas-SNP AMFR 267 hgsc.bcm.edu hg19 16 56401438 56401438 + Missense_Mutation SNP C C A novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . AMFR NM_001144 exon12 c.G1517T p.R506L TCTGACCGCTGGA . 398.0 100.0 360.0 0.0 . 40 . . . none . . PASS Atlas-SNP GRB7 2886 hgsc.bcm.edu hg19 17 37898588 37898588 + Missense_Mutation SNP A A G novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . GRB7 NM_001242442 exon2 c.A103G p.S35G CTTAGCAGCTCTC . 250.0 100.0 295.0 0.0 . 48 . . . none . . PASS Atlas-SNP SCRN2 90507 hgsc.bcm.edu hg19 17 45915995 45915995 + Silent SNP C C A novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . SCRN2 NM_138355 exon6 c.G840T p.S280S GCCTCCCGAGTCC . 94.0 4.0 78.0 0.0 . 35 . . . none . . PASS Atlas-SNP CDK5RAP3 80279 hgsc.bcm.edu hg19 17 46058013 46058013 + Silent SNP C C T novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . CDK5RAP3 NM_176096 exon12 c.C1132T p.L378L GATGTCCTGTCTG . 213.0 12.0 231.0 0.0 . 38 . . . none . . PASS Atlas-SNP RANBP3 8498 hgsc.bcm.edu hg19 19 5941706 5941706 + Missense_Mutation SNP T T C novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . RANBP3 NM_007322 exon5 c.A332G p.E111G CCATCTTCTCTGT . 99.0 30.0 159.0 0.0 . 36 . . . none . . PASS Atlas-SNP ZNF101 94039 hgsc.bcm.edu hg19 19 19789581 19789581 + Silent SNP G G C novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . ZNF101 NM_033204 exon3 c.G177C p.L59L AAACCTGGGGATT . 42.0 8.0 47.0 0.0 . 43 . . . none . . PASS Atlas-SNP ZFP14 57677 hgsc.bcm.edu hg19 19 36831515 36831515 + Missense_Mutation SNP A A C novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . ZFP14 NM_020917 exon5 c.T1213G p.F405V TACTAAAGGTCTT . 118.0 34.0 141.0 0.0 . 68 . . . none . . PASS Atlas-SNP BPIFA1 51297 hgsc.bcm.edu hg19 20 31825663 31825663 + Missense_Mutation SNP G G A novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . . NM_016583 exon2 c.G146A p.G49E TTGCAGGAAGCTT . 104.0 39.0 130.0 0.0 . . . . . none . . PASS Atlas-SNP COL6A1 1291 hgsc.bcm.edu hg19 21 47423886 47423886 + Missense_Mutation SNP G G A novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . COL6A1 NM_001848 exon35 c.G3046A p.V1016I CGCGGTGTCTTCC . 150.0 63.0 150.0 0.0 . 101 . . . none . . PASS Atlas-SNP ARVCF 421 hgsc.bcm.edu hg19 22 19966432 19966432 + Missense_Mutation SNP G G A novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . ARVCF NM_001670 exon7 c.C1568T p.S523L CAGCCCGACGTGT . 42.0 8.0 60.0 0.0 . 54 . . . none . . PASS Atlas-SNP GUCD1 83606 hgsc.bcm.edu hg19 22 24938994 24938994 + Missense_Mutation SNP A A T novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . . NM_031444 exon6 c.T703A p.F235I AGACAAAGAGGAT . 106.0 32.0 169.0 0.0 . . . . . none . . PASS Atlas-SNP CSF2RB 1439 hgsc.bcm.edu hg19 22 37334445 37334445 + Silent SNP G G T novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . CSF2RB NM_000395 exon14 c.G2595T p.V865V GGCTGTGCCCCAG . 161.0 37.0 189.0 0.0 . 104 . . . none . . PASS Atlas-SNP CSF2RB 1439 hgsc.bcm.edu hg19 22 37334446 37334446 + Missense_Mutation SNP C C T novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . CSF2RB NM_000395 exon14 c.C2596T p.P866S GCTGTGCCCCAGG . 165.0 38.0 187.0 0.0 . 104 . . . none . . PASS Atlas-SNP CASC5 57082 hgsc.bcm.edu hg19 15 40914067 40914068 + Frame_Shift_Del DEL TT TT - novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 TT TT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . CASC5 NM_170589 exon11 c.1682_1683del p.561_561del . . 65.0 21.0 94.0 0.0 . 269 . 0.323077 0 none . . PASS Atlas-INDEL KDM3A 55818 hgsc.bcm.edu hg19 2 86716748 86716749 + In_Frame_Ins INS - - GGG novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . KDM3A NM_018433 exon23 c.3539_3540insGGG p.K1180delinsKG . . 131.0 51.0 140.0 0.0 . 179 . 0.389313 0 none . . PASS Atlas-INDEL DNMT1 1786 hgsc.bcm.edu hg19 19 10250732 10250732 + Frame_Shift_Del DEL A A - novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . DNMT1 NM_001130823 exon33 c.3797delC p.S1266fs . . 51.0 10.0 84.0 0.0 . 148 . 0.196078 0 none . . PASS Atlas-INDEL DAG1 1605 hgsc.bcm.edu hg19 3 49568641 49568641 + Frame_Shift_Del DEL A A - novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . DAG1 NM_001177642 exon4 c.696delT p.N232fs . . 49.0 10.0 67.0 0.0 . 60 . 0.204082 0 none . . PASS Atlas-INDEL ZNF776 284309 hgsc.bcm.edu hg19 19 58265245 58265245 + Frame_Shift_Del DEL T T - novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . ZNF776 NM_173632 exon3 c.746delA p.N249fs . . 65.0 17.0 89.0 0.0 . 115 . 0.261538 0 none . . PASS Atlas-INDEL AHNAK 79026 hgsc.bcm.edu hg19 11 62293750 62293750 + Frame_Shift_Del DEL G G - novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . AHNAK NM_001620 exon5 c.8140delT p.L2714X . . 260.0 83.0 343.0 0.0 . 532 . 0.319231 0 none . . PASS Atlas-INDEL N4BP2 55728 hgsc.bcm.edu hg19 4 40122970 40122970 + Frame_Shift_Del DEL A A - novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . N4BP2 NM_018177 exon9 c.3238delG p.E1080fs . . 96.0 25.0 101.0 0.0 . 166 . 0.260417 0 none . . PASS Atlas-INDEL MAP3K7CL 56911 hgsc.bcm.edu hg19 21 30547133 30547133 + Frame_Shift_Del DEL T T - novel TCGA-G7-7502-01A-11D-2201-08 TCGA-G7-7502-10A-01D-2201-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ea718e65-433a-4e16-82fc-4f8e5be936af 2c767e98-3e53-4915-a687-2e67bc2cedc5 . . NM_020152 exon9 c.648delG p.T216fs . . 65.0 19.0 71.0 0.0 . . . 0.292308 0 none . . PASS Atlas-INDEL