Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm MTHFR 4524 hgsc.bcm.edu hg19 1 11854058 11854058 + Missense_Mutation SNP A A G novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . MTHFR NM_005957 exon9 c.T1436C p.I479T GTGAGGATGCCCT . 57.0 50.0 38.0 0.0 . 65 . . . none . . PASS Atlas-SNP GJB3 2707 hgsc.bcm.edu hg19 1 35251060 35251060 + Missense_Mutation SNP G G A novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 GJB3,NS,carcinoma,0,1 GJB3 NM_001005752 exon2 c.G697A p.A233T TCCTCCGCCAGCC . 189.0 39.0 163.0 0.0 . 40 . . . none . . PASS Atlas-SNP DNM3 26052 hgsc.bcm.edu hg19 1 172017810 172017810 + Missense_Mutation SNP A A C novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . DNM3 NM_001136127 exon10 c.A1255C p.K419Q ATTGTAAAGTTGA . 318.0 246.0 218.0 0.0 . 85 . . . none . . PASS Atlas-SNP PNPT1 87178 hgsc.bcm.edu hg19 2 55863466 55863466 + Missense_Mutation SNP T T C novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . PNPT1 NM_033109 exon28 c.A2258G p.Q753R GGCGACTGAAGCA . 71.0 28.0 34.0 0.0 . 68 . . . none . . PASS Atlas-SNP LONRF2 164832 hgsc.bcm.edu hg19 2 100916274 100916274 + Missense_Mutation SNP A A G novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . LONRF2 NM_198461 exon5 c.T1172C p.L391P GTTGGAAGGATGC . 126.0 41.0 62.0 0.0 . 62 . . . none . . PASS Atlas-SNP ZC3H6 376940 hgsc.bcm.edu hg19 2 113074893 113074893 + Missense_Mutation SNP C C G novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . ZC3H6 NM_198581 exon7 c.C960G p.N320K AGAGAACTGCATT . 522.0 184.0 317.0 0.0 . 93 . . . none . . PASS Atlas-SNP PAX8 7849 hgsc.bcm.edu hg19 2 113999196 113999196 + Missense_Mutation SNP C C T rs199890664 alternate_allele TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . PAX8 NM_013952 exon7 c.G709A p.E237K GGCACTCGAGCGG . 53.0 15.0 52.0 0.0 . 42 . . . alt C|0.999;G|0.001 . PASS Atlas-SNP LRP2 4036 hgsc.bcm.edu hg19 2 169997040 169997040 + Missense_Mutation SNP A A C novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . LRP2 NM_004525 exon72 c.T13124G p.I4375S AGGTTGATAGGCA . 51.0 17.0 35.0 0.0 . 751 . . . none . . PASS Atlas-SNP HAT1 8520 hgsc.bcm.edu hg19 2 172848147 172848147 + Nonsense_Mutation SNP G G T novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . HAT1 NM_003642 exon11 c.G1141T p.E381X CCAGAAGAACTGA . 383.0 153.0 277.0 0.0 . 40 . . . none . . PASS Atlas-SNP NEUROD1 4760 hgsc.bcm.edu hg19 2 182543486 182543486 + Missense_Mutation SNP G G C novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 NEUROD1,NS,carcinoma,0,1 NEUROD1 NM_002500 exon2 c.C102G p.H34Q TGCCTCGTGCTCC . 76.0 30.0 59.0 0.0 . 67 . . . none . . PASS Atlas-SNP BAP1 8314 hgsc.bcm.edu hg19 3 52443594 52443594 + Missense_Mutation SNP T T C novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . BAP1 NM_004656 exon3 c.A98G p.Y33C AGGTCGTAGATCT . 111.0 5.0 106.0 0.0 . 371 . . . none . . PASS Atlas-SNP TMEM45A 55076 hgsc.bcm.edu hg19 3 100295846 100295846 + Nonsense_Mutation SNP C C A novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . TMEM45A NM_018004 exon6 c.C812A p.S271X AAGAATCAGAAGA . 83.0 28.0 43.0 0.0 . 35 . . . none . . PASS Atlas-SNP EPHB3 2049 hgsc.bcm.edu hg19 3 184299386 184299386 + Missense_Mutation SNP C C G novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . EPHB3 NM_004443 exon16 c.C2973G p.N991K GATGAACCAGACG . 129.0 53.0 106.0 0.0 . 114 . . . none . . PASS Atlas-SNP LMLN 89782 hgsc.bcm.edu hg19 3 197726166 197726166 + Silent SNP G G A novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . LMLN NM_001136049 exon11 c.G1185A p.Q395Q CACTCAGAATCGA . 58.0 25.0 41.0 0.0 . 53 . . . none . . PASS Atlas-SNP POU4F2 5458 hgsc.bcm.edu hg19 4 147560466 147560466 + Silent SNP C C T novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . POU4F2 NM_004575 exon1 c.C174T p.G58G CGGCGGCGGCGGC . 109.0 7.0 49.0 0.0 . 83 . . . none . . PASS Atlas-SNP POU4F2 5458 hgsc.bcm.edu hg19 4 147560484 147560484 + Silent SNP C C A novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . POU4F2 NM_004575 exon1 c.C192A p.G64G CGGCGGCGGCGGC . 116.0 6.0 63.0 0.0 . 83 . . . none . . PASS Atlas-SNP NEK1 4750 hgsc.bcm.edu hg19 4 170354709 170354709 + Missense_Mutation SNP T T G novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . NEK1 NM_001199397 exon29 c.A2872C p.T958P CCTTTGTTTCTTT . 215.0 74.0 121.0 0.0 . 203 . . . none . . PASS Atlas-SNP AGXT2 64902 hgsc.bcm.edu hg19 5 35014199 35014199 + Missense_Mutation SNP C C T novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . AGXT2 NM_031900 exon10 c.G989A p.G330D TGAGAGCCCAACC . 183.0 73.0 163.0 0.0 . 89 . . . none . . PASS Atlas-SNP PCDHGA2 56113 hgsc.bcm.edu hg19 5 140718667 140718667 + Silent SNP C C G novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . PCDHGA2 NM_018915 exon1 c.C129G p.S43S AGGCTCCTTCGTA . 77.0 34.0 72.0 0.0 . 205 . . . none . . PASS Atlas-SNP NR3C1 2908 hgsc.bcm.edu hg19 5 142662143 142662143 + Missense_Mutation SNP G G C novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 NR3C1_ENST00000415690,NS,carcinoma,0,2 NR3C1 NM_001024094 exon8 c.C2174G p.S725C TGCATAGAATCCA . 93.0 37.0 77.0 0.0 . 124 . . . none . . PASS Atlas-SNP CPEB4 80315 hgsc.bcm.edu hg19 5 173372036 173372036 + Missense_Mutation SNP A A G novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . CPEB4 NM_030627 exon5 c.A1349G p.H450R CTCTTCATAGTGG . 179.0 71.0 150.0 0.0 . 54 . . . none . . PASS Atlas-SNP OR2B2 81697 hgsc.bcm.edu hg19 6 27879766 27879766 + Missense_Mutation SNP T T C novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . OR2B2 NM_033057 exon1 c.A332G p.E111G AGACATTCTGTGG . 134.0 54.0 107.0 0.0 . 54 . . . none . . PASS Atlas-SNP DST 667 hgsc.bcm.edu hg19 6 56489406 56489406 + Silent SNP T T G novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . DST NM_001723 exon22 c.A3240C p.R1080R AGTATATCGAGTC . 44.0 16.0 30.0 0.0 . 1427 . . . none . . PASS Atlas-SNP FILIP1 27145 hgsc.bcm.edu hg19 6 76024129 76024129 + Silent SNP G G T novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . FILIP1 NM_015687 exon5 c.C1419A p.V473V ACTCTTGACCACC . 73.0 4.0 43.0 0.0 . 173 . . . none . . PASS Atlas-SNP FAM26F 441168 hgsc.bcm.edu hg19 6 116784681 116784681 + Missense_Mutation SNP T T A novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . FAM26F NM_001010919 exon3 c.T761A p.I254N CAAGCATGAAAGA . 202.0 78.0 150.0 0.0 . 12 . . . none . . PASS Atlas-SNP SLC2A12 154091 hgsc.bcm.edu hg19 6 134349788 134349788 + Missense_Mutation SNP T T A novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . SLC2A12 NM_145176 exon2 c.A1175T p.Y392F GGTCCATAAATCA . 137.0 49.0 89.0 0.0 . 43 . . . none . . PASS Atlas-SNP MUC17 140453 hgsc.bcm.edu hg19 7 100683876 100683876 + Missense_Mutation SNP T T G rs145514577 TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 MUC17,NS,carcinoma,0,1 MUC17 NM_001040105 exon3 c.T9179G p.I3060S TGGCCATTCCTGA . 53.0 6.0 37.0 1.0 . 804 . . . weak . . PASS Atlas-SNP MET 4233 hgsc.bcm.edu hg19 7 116423413 116423413 + Missense_Mutation SNP T T C rs121913247 TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 MET,rectum,carcinoma,-2,1 MET NM_001127500 exon19 c.T3742C p.Y1248H GACATGTATGATA . 242.0 129.0 110.0 1.0 . 412 . . . weak . . PASS Atlas-SNP SSMEM1 0 hgsc.bcm.edu hg19 7 129847790 129847790 + Missense_Mutation SNP C C T rs371191805 TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . . NM_145268 exon1 c.C40T p.P14S GATCCTCCCCCAA . 228.0 127.0 103.0 0.0 . . . . . weak . . PASS Atlas-SNP C7orf34 135927 hgsc.bcm.edu hg19 7 142636835 142636835 + Missense_Mutation SNP G G C novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . C7orf34 NM_178829 exon1 c.G192C p.E64D GACAGAGAAAACG . 170.0 84.0 94.0 0.0 . 34 . . . none . . PASS Atlas-SNP TSPYL5 85453 hgsc.bcm.edu hg19 8 98289181 98289181 + Missense_Mutation SNP A A C novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . TSPYL5 NM_033512 exon1 c.T892G p.F298V GATCGAAGTAGAA . 153.0 51.0 90.0 0.0 . 48 . . . none . . PASS Atlas-SNP TG 7038 hgsc.bcm.edu hg19 8 134024148 134024148 + Missense_Mutation SNP T T C novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . TG NM_003235 exon36 c.T6265C p.S2089P CTAGTGTCTCTGG . 66.0 32.0 46.0 0.0 . 416 . . . none . . PASS Atlas-SNP CIZ1 25792 hgsc.bcm.edu hg19 9 130939947 130939947 + Silent SNP G G T novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . CIZ1 NM_001257975 exon10 c.C1806A p.P602P GTCACTGGGGCGG . 57.0 26.0 52.0 0.0 . 75 . . . none . . PASS Atlas-SNP PRKCQ 5588 hgsc.bcm.edu hg19 10 6557092 6557092 + Silent SNP C C T rs201768145 TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . PRKCQ NM_006257 exon2 c.G6A p.S2S AAATGGCGACATG . 80.0 22.0 52.0 0.0 . 113 . . . weak C|0.999;T|0.001 0.001 PASS Atlas-SNP MICU1 10367 hgsc.bcm.edu hg19 10 74127978 74127978 + Missense_Mutation SNP C C G novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . . NM_001195518 exon12 c.G1406C p.W469S AAGTCCCAGGCAG . 86.0 39.0 56.0 0.0 . . . . . none . . PASS Atlas-SNP TSPAN14 81619 hgsc.bcm.edu hg19 10 82264502 82264502 + Missense_Mutation SNP C C A novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . TSPAN14 NM_030927 exon3 c.C100A p.L34I GTCTTCCTTGGAG . 128.0 51.0 108.0 0.0 . 29 . . . none . . PASS Atlas-SNP TCERG1L 256536 hgsc.bcm.edu hg19 10 132896657 132896657 + Missense_Mutation SNP T T G novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . TCERG1L NM_174937 exon11 c.A1516C p.K506Q CTTCTTTTATTCT . 23.0 7.0 26.0 0.0 . 91 . . . none . . PASS Atlas-SNP PIDD 55367 hgsc.bcm.edu hg19 11 801091 801091 + Silent SNP G G A novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . PIDD NM_145887 exon10 c.C1660T p.L554L ACAACAGGTGCAG . 127.0 51.0 99.0 0.0 . 76 . . . none . . PASS Atlas-SNP CDKN1C 1028 hgsc.bcm.edu hg19 11 2906711 2906711 + Missense_Mutation SNP G G T novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . CDKN1C NM_000076 exon1 c.C9A p.D3E GGACGCGTCGGAC . 158.0 62.0 145.0 0.0 . 4 . . . none . . PASS Atlas-SNP NLRP14 338323 hgsc.bcm.edu hg19 11 7063888 7063888 + Missense_Mutation SNP A A C novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . NLRP14 NM_176822 exon4 c.A631C p.K211Q AGGTTTAAGTATG . 244.0 87.0 157.0 0.0 . 187 . . . none . . PASS Atlas-SNP SYT13 57586 hgsc.bcm.edu hg19 11 45277403 45277403 + Missense_Mutation SNP C C T novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . SYT13 NM_020826 exon2 c.G223A p.A75T GGAGGGCACGGGG . 143.0 45.0 99.0 0.0 . 45 . . . none . . PASS Atlas-SNP GDF3 9573 hgsc.bcm.edu hg19 12 7842823 7842823 + Missense_Mutation SNP C C G novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . GDF3 NM_020634 exon2 c.G746C p.R249T GCTCTCCTTTTCC . 151.0 61.0 122.0 0.0 . 68 . . . none . . PASS Atlas-SNP OVCH1 341350 hgsc.bcm.edu hg19 12 29608320 29608320 + Missense_Mutation SNP G G C novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . OVCH1 NM_183378 exon20 c.C2299G p.L767V ATACTAGTGGCCC . 339.0 123.0 247.0 0.0 . 195 . . . none . . PASS Atlas-SNP OVCH1 341350 hgsc.bcm.edu hg19 12 29608321 29608321 + Silent SNP T T C novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . OVCH1 NM_183378 exon20 c.A2298G p.P766P TACTAGTGGCCCA . 335.0 121.0 243.0 0.0 . 195 . . . none . . PASS Atlas-SNP IPO8 10526 hgsc.bcm.edu hg19 12 30792659 30792659 + Missense_Mutation SNP A A C novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . IPO8 NM_006390 exon21 c.T2279G p.L760R ACGAAGAGTGGAA . 87.0 41.0 55.0 0.0 . 105 . . . none . . PASS Atlas-SNP SLC2A13 114134 hgsc.bcm.edu hg19 12 40158612 40158612 + Nonsense_Mutation SNP G G C novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . SLC2A13 NM_052885 exon8 c.C1494G p.Y498X GAAATTGTAAGCC . 136.0 40.0 91.0 0.0 . 91 . . . none . . PASS Atlas-SNP MLL2 8085 hgsc.bcm.edu hg19 12 49434397 49434397 + Missense_Mutation SNP G G C novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 MLL2_ENST00000301067,NS,carcinoma,0,2 MLL2 NM_003482 exon31 c.C7156G p.R2386G GGGGCCGAGGAGT . 199.0 73.0 147.0 0.0 . 1173 . . . none . . PASS Atlas-SNP LRIG3 121227 hgsc.bcm.edu hg19 12 59271539 59271539 + Missense_Mutation SNP T T C novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . LRIG3 NM_153377 exon15 c.A2179G p.K727E TCAGTTTAGGGGG . 90.0 42.0 56.0 0.0 . 120 . . . none . . PASS Atlas-SNP NAV3 89795 hgsc.bcm.edu hg19 12 78400770 78400770 + Silent SNP C C A novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . NAV3 NM_014903 exon8 c.C1452A p.V484V ACCAGTCAAAGAA . 292.0 109.0 170.0 0.0 . 506 . . . none . . PASS Atlas-SNP PTPRQ 374462 hgsc.bcm.edu hg19 12 80982096 80982096 + Missense_Mutation SNP T T C novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . PTPRQ NM_001145026 exon23 c.T3958C p.Y1320H TACCTCTATGAAG . 160.0 61.0 121.0 0.0 . 119 . . . none . . PASS Atlas-SNP SALL2 6297 hgsc.bcm.edu hg19 14 21993091 21993091 + Silent SNP G G A novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . SALL2 NM_005407 exon2 c.C771T p.S257S GGAGGAGGAAGAT . 99.0 4.0 67.0 0.0 . 95 . . . none . . PASS Atlas-SNP RHBDL1 9028 hgsc.bcm.edu hg19 16 726998 726998 + Missense_Mutation SNP C C T novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . RHBDL1 NM_003961 exon3 c.C649T p.R217C GGGGCCCGCCTCA . 99.0 46.0 84.0 0.0 . 14 . . . none . . PASS Atlas-SNP GSG2 83903 hgsc.bcm.edu hg19 17 3629517 3629517 + Missense_Mutation SNP A A G novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . GSG2 NM_031965 exon1 c.A2288G p.N763S AATGTAACACTCC . 172.0 100.0 99.0 0.0 . 48 . . . none . . PASS Atlas-SNP DHX33 56919 hgsc.bcm.edu hg19 17 5354241 5354241 + Silent SNP C C T novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . DHX33 NM_020162 exon9 c.G1410A p.A470A AATGGCCGCCTGA . 195.0 43.0 117.0 0.0 . 41 . . . none . . PASS Atlas-SNP ALOX12 239 hgsc.bcm.edu hg19 17 6909258 6909258 + Missense_Mutation SNP C C A novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . ALOX12 NM_000697 exon10 c.C1330A p.P444T TGTCCTCCTGACG . 66.0 16.0 30.0 0.0 . 49 . . . none . . PASS Atlas-SNP CISD3 284106 hgsc.bcm.edu hg19 17 36889563 36889563 + Missense_Mutation SNP C C T novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . CISD3 NM_001136498 exon4 c.C239T p.T80I AACGCACTGGCCT . 108.0 55.0 62.0 0.0 . 12 . . . none . . PASS Atlas-SNP MPP2 4355 hgsc.bcm.edu hg19 17 41960406 41960406 + Silent SNP C C G novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . MPP2 NM_005374 exon5 c.G318C p.T106T GTCGTGCGTCTCC . 122.0 13.0 59.0 0.0 . 67 . . . none . . PASS Atlas-SNP SCRN2 90507 hgsc.bcm.edu hg19 17 45915920 45915920 + Silent SNP A A G novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . SCRN2 NM_138355 exon6 c.T915C p.L305L GGCGGTAAGAAAG . 121.0 35.0 76.0 0.0 . 35 . . . none . . PASS Atlas-SNP ESCO1 114799 hgsc.bcm.edu hg19 18 19112541 19112541 + Missense_Mutation SNP C C A novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . ESCO1 NM_052911 exon11 c.G2268T p.W756C GCAGCACCAGGCT . 105.0 41.0 79.0 0.0 . 89 . . . none . . PASS Atlas-SNP VAV1 7409 hgsc.bcm.edu hg19 19 6821672 6821672 + Missense_Mutation SNP G G A novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 VAV1,caecum,carcinoma,0,2 VAV1 NM_005428 exon3 c.G361A p.A121T CCGATCGCCCAGA . 127.0 43.0 80.0 1.0 . 140 . . . none . . PASS Atlas-SNP MUC16 94025 hgsc.bcm.edu hg19 19 8961960 8961960 + Missense_Mutation SNP C C T rs200653636 bycluster TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . MUC16 NM_024690 exon83 c.G43417A p.G14473S GGACACCGCAGAT . 166.0 49.0 119.0 0.0 . 4315 . . . weak . . PASS Atlas-SNP DPF1 8193 hgsc.bcm.edu hg19 19 38704380 38704380 + Silent SNP T T C novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . DPF1 NM_001135155 exon10 c.A996G p.L332L GAATTGTAAACAC . 152.0 58.0 127.0 0.0 . 54 . . . none . . PASS Atlas-SNP CACNG8 59283 hgsc.bcm.edu hg19 19 54485656 54485656 + Missense_Mutation SNP C C G novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . CACNG8 NM_031895 exon4 c.C831G p.S277R CTCTAGCTCCCGC . 22.0 7.0 19.0 0.0 . 29 . . . none . . PASS Atlas-SNP ZNF582 147948 hgsc.bcm.edu hg19 19 56896344 56896344 + Missense_Mutation SNP C C G novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . ZNF582 NM_144690 exon5 c.G442C p.E148Q GCATTTCTTCATG . 86.0 38.0 65.0 0.0 . 56 . . . none . . PASS Atlas-SNP ABHD12 26090 hgsc.bcm.edu hg19 20 25282895 25282895 + Missense_Mutation SNP T T C novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . ABHD12 NM_001042472 exon12 c.A1117G p.K373E TGTATTTGTGCCT . 90.0 38.0 70.0 0.0 . 46 . . . none . . PASS Atlas-SNP C22orf29 79680 hgsc.bcm.edu hg19 22 19839753 19839753 + Missense_Mutation SNP G G T novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . C22orf29 NM_024627 exon3 c.C32A p.P11H ATGCGAGGGCCCT . 106.0 34.0 85.0 0.0 . 23 . . . none . . PASS Atlas-SNP SSTR3 6753 hgsc.bcm.edu hg19 22 37603060 37603060 + Silent SNP G G T rs144127697 alternate_allele TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . SSTR3 NM_001051 exon2 c.C783A p.A261A CACCACGGCCACC . 146.0 60.0 107.0 0.0 . 42 . . . alt G|1.000;A|0.000 . PASS Atlas-SNP HCFC1 3054 hgsc.bcm.edu hg19 X 153216893 153216893 + Missense_Mutation SNP C C G novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . HCFC1 NM_005334 exon22 c.G5425C p.E1809Q GGTTTTCCTTCTT . 46.0 33.0 38.0 0.0 . 284 . . . none . . PASS Atlas-SNP CLP1 10978 hgsc.bcm.edu hg19 11 57427119 57427121 + In_Frame_Del DEL TGA TGA - novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 TGA TGA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . CLP1 NM_001142597 exon2 c.170_172del p.57_58del . . 241.0 83.0 168.0 0.0 . 40 . 0.344398 0 none . . PASS Atlas-Indel,Pindel JAG1 182 hgsc.bcm.edu hg19 20 10620302 10620302 + Frame_Shift_Del DEL T T - novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . JAG1 NM_000214 exon26 c.3502delG p.A1168fs . . 161.0 75.0 108.0 0.0 . 213 . 0.465839 0 none . . PASS Atlas-Indel,Pindel C11orf24 53838 hgsc.bcm.edu hg19 11 68029170 68029172 + In_Frame_Del DEL CTT CTT - novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 CTT CTT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . C11orf24 NM_022338 exon4 c.1292_1294del p.431_432del . . 125.0 44.0 93.0 0.0 . 35 . 0.352 0 none . . PASS Atlas-Indel,Pindel ZNF80 7634 hgsc.bcm.edu hg19 3 113955534 113955536 + In_Frame_Del DEL CTC CTC - novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 CTC CTC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . ZNF80 NM_007136 exon1 c.387_389del p.129_130del . . 111.0 48.0 83.0 0.0 . 75 . 0.432432 0 none . . PASS Atlas-Indel,Pindel FAT1 2195 hgsc.bcm.edu hg19 4 187629813 187629814 + In_Frame_Ins INS - - AAA novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . FAT1 NM_005245 exon2 c.1169_1170insTTT p.K390delinsIX . . 82.0 34.0 47.0 0.0 . 500 . 0.414634 0 none . . PASS Atlas-Indel,Pindel NCKAP5 344148 hgsc.bcm.edu hg19 2 133540450 133540451 + Frame_Shift_Ins INS - - A novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . NCKAP5 NM_207363 exon14 c.3934_3935insT p.L1312fs . . 167.0 70.0 114.0 0.0 . 322 . 0.419162 0 none . . PASS Atlas-Indel,Pindel RACGAP1 29127 hgsc.bcm.edu hg19 12 50410456 50410456 + Frame_Shift_Del DEL G G - novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . RACGAP1 NM_013277 exon4 c.44delT p.L15fs . . 76.0 39.0 53.0 0.0 . 36 . 0.513158 0 none . . PASS Atlas-Indel,Pindel SLC2A13 114134 hgsc.bcm.edu hg19 12 40441958 40441958 + Frame_Shift_Del DEL A A - novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . SLC2A13 NM_052885 exon2 c.612delA p.L204fs . . 132.0 49.0 73.0 0.0 . 91 . 0.371212 0 none . . PASS Atlas-Indel,Pindel CTTNBP2 83992 hgsc.bcm.edu hg19 7 117358121 117358122 + Frame_Shift_Del DEL GG GG - novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 GG GG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . CTTNBP2 NM_033427 exon22 c.4697_4698del p.1566_1566del . . 252.0 142.0 155.0 0.0 . 200 . 0.563492 0 none . . PASS Atlas-Indel,Pindel TMEM174 134288 hgsc.bcm.edu hg19 5 72469241 72469241 + Frame_Shift_Del DEL G G - novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . TMEM174 NM_153217 exon1 c.170delT p.M57fs . . 99.0 27.0 84.0 0.0 . 22 . 0.273 . none . . PASS Pindel MUC4 4585 hgsc.bcm.edu hg19 3 195511736 195511783 + In_Frame_Del DEL TGGCCTGTCCTGTGGATGCTGAGGAAGTGTCGGTGACAAGAAGAGGGA TGGCCTGTCCTGTGGATGCTGAGGAAGTGTCGGTGACAAGAAGAGGGA - novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 TGGCCTGTCCTGTGGATGCTGAGGAAGTGTCGGTGACAAGAAGAGGGA TGGCCTGTCCTGTGGATGCTGAGGAAGTGTCGGTGACAAGAAGAGGGA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . MUC4 NM_018406 exon2 c.6669_6716del p.2223_2239del . . 198.0 11.0 155.0 0.0 . 1505 . 0.056 . none . . PASS Pindel RNF222 643904 hgsc.bcm.edu hg19 17 8296546 8296546 + Frame_Shift_Del DEL G G - novel TCGA-G7-A8LE-01A-11D-A35Z-10 TCGA-G7-A8LE-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f304b920-e25e-445a-b834-d54c241d029b e8d9c96d-cf86-4b29-ba93-23c5e8b4bd28 . RNF222 NM_001146684 exon3 c.235delT p.S79fs . . 192.0 62.0 123.0 0.0 . 2 . 0.323 . none . . PASS Pindel