Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm MFN2 9927 hgsc.bcm.edu hg19 1 12052714 12052714 + Missense_Mutation SNP C C T novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . MFN2 NM_014874 exon4 c.C278T p.A93V TGCTGGCTCGGAG . 153.0 29.0 169.0 0.0 . 83 . . . none . . PASS Atlas-SNP SRSF4 6429 hgsc.bcm.edu hg19 1 29486974 29486974 + Missense_Mutation SNP G G C novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . SRSF4 NM_005626 exon2 c.C163G p.L55V CATTCAGTTCATA . 205.0 33.0 184.0 0.0 . 44 . . . none . . PASS Atlas-SNP FAM151A 338094 hgsc.bcm.edu hg19 1 55080373 55080373 + Missense_Mutation SNP T T C novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . FAM151A NM_176782 exon4 c.A575G p.Q192R ACTCACTGTGTGG . 127.0 24.0 136.0 0.0 . 58 . . . none . . PASS Atlas-SNP SLC44A5 204962 hgsc.bcm.edu hg19 1 75669452 75669452 + Missense_Mutation SNP T T A novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . SLC44A5 NM_001130058 exon24 c.A2114T p.K705M AAAATCTTCAGCA . 89.0 15.0 82.0 0.0 . 231 . . . none . . PASS Atlas-SNP HENMT1 113802 hgsc.bcm.edu hg19 1 109192980 109192980 + Silent SNP G G A novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . HENMT1 NM_144584 exon7 c.C609T p.Y203Y CACAGAGTAATCA . 85.0 15.0 84.0 0.0 . 38 . . . none . . PASS Atlas-SNP ASH1L 55870 hgsc.bcm.edu hg19 1 155449729 155449729 + Silent SNP A A G novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . ASH1L NM_018489 exon3 c.T2932C p.L978L TCATTAATTGTCC . 57.0 12.0 55.0 0.0 . 279 . . . none . . PASS Atlas-SNP LMNA 4000 hgsc.bcm.edu hg19 1 156105104 156105104 + Splice_Site SNP G G A rs267607588 alternate_allele TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . LMNA NM_170707 exon5 c.936+1G>A . AAGCAGGTGATAC . 165.0 34.0 147.0 0.0 . 31 . . . alt . . PASS Atlas-SNP IQGAP3 128239 hgsc.bcm.edu hg19 1 156510499 156510499 + Splice_Site SNP C C A novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . IQGAP3 NM_178229 exon24 c.2739+1G>T . CCCATACCTGCAG . 64.0 10.0 86.0 0.0 . 146 . . . none . . PASS Atlas-SNP DNAH14 127602 hgsc.bcm.edu hg19 1 225267022 225267022 + Silent SNP A A G novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a DNAH14_ENST00000430092,NS,carcinoma,0,2 DNAH14 NM_001373 exon18 c.A2538G p.K846K AGAAAAAGAGTTC . 293.0 51.0 281.0 0.0 . 300 . . . none . . PASS Atlas-SNP RSAD2 91543 hgsc.bcm.edu hg19 2 7035978 7035978 + Missense_Mutation SNP G G A novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . RSAD2 NM_080657 exon6 c.G991A p.E331K GTAGAAGAAGCTA . 96.0 19.0 113.0 0.0 . 38 . . . none . . PASS Atlas-SNP SRSF7 6432 hgsc.bcm.edu hg19 2 38977271 38977271 + Missense_Mutation SNP T T C novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a SRSF7,NS,carcinoma,0,1 SRSF7 NM_001195446 exon2 c.A94G p.S32G AATAACTGAAAGC . 114.0 15.0 127.0 2.0 . 29 . . . none . . PASS Atlas-SNP SLC8A1 6546 hgsc.bcm.edu hg19 2 40657412 40657412 + Silent SNP G G A novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . SLC8A1 NM_001252624 exon1 c.C9T p.N3N CCGCATGTTGTAC . 66.0 18.0 66.0 0.0 . 221 . . . none . . PASS Atlas-SNP THNSL2 55258 hgsc.bcm.edu hg19 2 88474889 88474889 + Silent SNP G G A novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . THNSL2 NM_018271 exon3 c.G540A p.T180T GACAACGGTGCTG . 187.0 28.0 189.0 0.0 . 66 . . . none . . PASS Atlas-SNP AFF3 3899 hgsc.bcm.edu hg19 2 100266104 100266104 + Missense_Mutation SNP G G C novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a AFF3,scalp,carcinoma,0,2 AFF3 NM_001025108 exon12 c.C1243G p.R415G GAGCGCGGAGAGC . 359.0 85.0 372.0 0.0 . 164 . . . none . . PASS Atlas-SNP CCDC115 84317 hgsc.bcm.edu hg19 2 131096793 131096793 + Missense_Mutation SNP G G T novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . CCDC115 NM_032357 exon5 c.C443A p.A148D TCTGCGGCCAGCT . 42.0 5.0 49.0 0.0 . 19 . . . none . . PASS Atlas-SNP LRP1B 53353 hgsc.bcm.edu hg19 2 141641491 141641491 + Missense_Mutation SNP T T A novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . LRP1B NM_018557 exon25 c.A4064T p.N1355I TCCAGATTGCTGT . 115.0 17.0 81.0 0.0 . 1315 . . . none . . PASS Atlas-SNP COL5A2 1290 hgsc.bcm.edu hg19 2 189916160 189916160 + Silent SNP T T A novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . COL5A2 NM_000393 exon42 c.A2817T p.G939G TGGAGGTCCCTCC . 120.0 26.0 90.0 0.0 . 230 . . . none . . PASS Atlas-SNP DNAH7 56171 hgsc.bcm.edu hg19 2 196915964 196915964 + Missense_Mutation SNP C C T novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . DNAH7 NM_018897 exon3 c.G88A p.A30T TGCTGGCTAATTT . 76.0 18.0 87.0 0.0 . 512 . . . none . . PASS Atlas-SNP PARD3B 117583 hgsc.bcm.edu hg19 2 206110541 206110541 + Missense_Mutation SNP A A T novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . PARD3B NM_205863 exon16 c.A2180T p.K727I GACAAAAATCGGG . 173.0 41.0 164.0 0.0 . 314 . . . none . . PASS Atlas-SNP ACADL 33 hgsc.bcm.edu hg19 2 211057576 211057576 + Missense_Mutation SNP A A G novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . ACADL NM_001608 exon10 c.T1151C p.V384A AGCTGTACACAGT . 92.0 15.0 87.0 0.0 . 38 . . . none . . PASS Atlas-SNP ARMC9 80210 hgsc.bcm.edu hg19 2 232081381 232081381 + Missense_Mutation SNP T T C novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . ARMC9 NM_025139 exon5 c.T379C p.Y127H ATTTCCTACTTCA . 143.0 33.0 118.0 0.0 . 129 . . . none . . PASS Atlas-SNP ZNF619 285267 hgsc.bcm.edu hg19 3 40523745 40523745 + Missense_Mutation SNP T T A novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . ZNF619 NM_001145082 exon4 c.T203A p.L68Q TTCCTCTGGATAC . 83.0 24.0 48.0 0.0 . 57 . . . none . . PASS Atlas-SNP ROBO1 6091 hgsc.bcm.edu hg19 3 78710202 78710202 + Silent SNP C C T novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . ROBO1 NM_002941 exon16 c.G2298A p.K766K GGCAAACTTGATT . 112.0 30.0 99.0 0.0 . 833 . . . none . . PASS Atlas-SNP NMD3 51068 hgsc.bcm.edu hg19 3 160967299 160967299 + Silent SNP T T C novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . NMD3 NM_015938 exon14 c.T1261C p.L421L TGGAAATTGAAAG . 337.0 57.0 304.0 0.0 . 49 . . . none . . PASS Atlas-SNP ALG3 10195 hgsc.bcm.edu hg19 3 183963295 183963295 + Silent SNP G G C novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . ALG3 NM_005787 exon3 c.C405G p.T135T CAGCAAGGTAGCC . 159.0 45.0 146.0 0.0 . 48 . . . none . . PASS Atlas-SNP SENP5 205564 hgsc.bcm.edu hg19 3 196613001 196613001 + Nonsense_Mutation SNP A A T novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . SENP5 NM_152699 exon2 c.A949T p.K317X GTGGTGAAGGGGA . 75.0 28.0 53.0 0.0 . 68 . . . none . . PASS Atlas-SNP SPON2 10417 hgsc.bcm.edu hg19 4 1165650 1165650 + Silent SNP A A T novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . SPON2 NM_012445 exon2 c.T210A p.S70S CAGCGAAGACCAC . 76.0 18.0 120.0 0.0 . 22 . . . none . . PASS Atlas-SNP MAN2B2 23324 hgsc.bcm.edu hg19 4 6576972 6576972 + Missense_Mutation SNP C C A novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . MAN2B2 NM_015274 exon1 c.C35A p.P12Q TGGCACCGCTCCT . 76.0 18.0 63.0 0.0 . 80 . . . none . . PASS Atlas-SNP SEC31A 22872 hgsc.bcm.edu hg19 4 83748748 83748748 + Nonsense_Mutation SNP G G T novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . SEC31A NM_001077207 exon24 c.C3065A p.S1022X ATTGGTGATGTGA . 155.0 28.0 143.0 0.0 . 227 . . . none . . PASS Atlas-SNP USP53 54532 hgsc.bcm.edu hg19 4 120190931 120190931 + Silent SNP A A G novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . USP53 NM_019050 exon14 c.A1374G p.L458L AAACTTACTTTCT . 524.0 54.0 489.0 0.0 . 69 . . . none . . PASS Atlas-SNP DROSHA 29102 hgsc.bcm.edu hg19 5 31526232 31526232 + Missense_Mutation SNP C C A novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . DROSHA NM_013235 exon4 c.G808T p.D270Y CTCGGTCATAATC . 78.0 17.0 82.0 0.0 . 130 . . . none . . PASS Atlas-SNP WDR41 55255 hgsc.bcm.edu hg19 5 76758982 76758982 + Silent SNP A A G novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a WDR41,colon,carcinoma,0,1 WDR41 NM_018268 exon4 c.T286C p.L96L ATTCCAAGGAAGG . 97.0 17.0 118.0 0.0 . 29 . . . none . . PASS Atlas-SNP WDR36 134430 hgsc.bcm.edu hg19 5 110448824 110448824 + Missense_Mutation SNP A A T novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . WDR36 NM_139281 exon16 c.A1936T p.I646F TGCTCTATTAGGA . 90.0 21.0 97.0 0.0 . 111 . . . none . . PASS Atlas-SNP PCDHGC3 5098 hgsc.bcm.edu hg19 5 140857767 140857767 + Missense_Mutation SNP T T G novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . PCDHGC3 NM_032402 exon1 c.T2084G p.L695R ATCTACTTCTTTC . 86.0 18.0 80.0 0.0 . 173 . . . none . . PASS Atlas-SNP MTCH1 23787 hgsc.bcm.edu hg19 6 36936732 36936732 + Missense_Mutation SNP A A C novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . MTCH1 NM_001271641 exon12 c.T1117G p.S373A GGCTGGAGCCTCG . 69.0 16.0 91.0 0.0 . 24 . . . none . . PASS Atlas-SNP CYP39A1 51302 hgsc.bcm.edu hg19 6 46604152 46604152 + Missense_Mutation SNP A A C novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . CYP39A1 NM_016593 exon5 c.T706G p.C236G ATTTACATGCTTT . 155.0 27.0 163.0 0.0 . 41 . . . none . . PASS Atlas-SNP MDN1 23195 hgsc.bcm.edu hg19 6 90405588 90405588 + Missense_Mutation SNP G G T novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . MDN1 NM_014611 exon61 c.C9507A p.S3169R CTGGCTGCTCCCA . 111.0 23.0 104.0 0.0 . 478 . . . none . . PASS Atlas-SNP AKD1 221264 hgsc.bcm.edu hg19 6 109954291 109954291 + Silent SNP G G T novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . AKD1 NM_145025 exon12 c.C1089A p.I363I ACAGTAGATTTTA . 103.0 33.0 77.0 0.0 . 223 . . . none . . PASS Atlas-SNP KATNA1 11104 hgsc.bcm.edu hg19 6 149944285 149944285 + Missense_Mutation SNP A A T novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . KATNA1 NM_007044 exon4 c.T455A p.V152D CAACGAACAGCTT . 92.0 12.0 93.0 0.0 . 34 . . . none . . PASS Atlas-SNP ZNF479 90827 hgsc.bcm.edu hg19 7 57187920 57187920 + Missense_Mutation SNP C C G novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a ZNF479,colon,carcinoma,0,1 ZNF479 NM_033273 exon5 c.G1202C p.R401T TGAATTCTCTTGT . 307.0 80.0 241.0 1.0 . 193 . . . none . . PASS Atlas-SNP GTF2IRD1 9569 hgsc.bcm.edu hg19 7 73953047 73953047 + Missense_Mutation SNP A A T novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . GTF2IRD1 NM_001199207 exon13 c.A1581T p.K527N GATCAAAATTGAG . 49.0 8.0 72.0 0.0 . 91 . . . none . . PASS Atlas-SNP MUC17 140453 hgsc.bcm.edu hg19 7 100683876 100683876 + Missense_Mutation SNP T T G rs145514577 TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a MUC17,NS,carcinoma,0,1 MUC17 NM_001040105 exon3 c.T9179G p.I3060S TGGCCATTCCTGA . 57.0 5.0 42.0 2.0 . 804 . . . weak . . PASS Atlas-SNP MOGAT3 346606 hgsc.bcm.edu hg19 7 100844043 100844043 + Silent SNP G G A novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . MOGAT3 NM_178176 exon1 c.C93T p.L31L GAAAGTGAGCACA . 78.0 13.0 89.0 0.0 . 72 . . . none . . PASS Atlas-SNP RINT1 60561 hgsc.bcm.edu hg19 7 105187490 105187490 + Missense_Mutation SNP G G A novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . RINT1 NM_021930 exon5 c.G649A p.V217I GCCACAGTTAAAT . 184.0 54.0 147.0 0.0 . 65 . . . none . . PASS Atlas-SNP NAA38 51691 hgsc.bcm.edu hg19 7 117828344 117828344 + Missense_Mutation SNP G G A novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a NAA38,mouth,carcinoma,0,1 NAA38 NM_016200 exon3 c.G85A p.G29S CTGAAAGGTTTTG . 86.0 28.0 68.0 0.0 . 16 . . . none . . PASS Atlas-SNP MGAM 8972 hgsc.bcm.edu hg19 7 141720863 141720863 + Missense_Mutation SNP T T A novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . MGAM NM_004668 exon5 c.T538A p.S180T CAGACATCTAATC . 123.0 17.0 86.0 0.0 . 767 . . . none . . PASS Atlas-SNP ZNF786 136051 hgsc.bcm.edu hg19 7 148767517 148767517 + Missense_Mutation SNP A A C novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . ZNF786 NM_152411 exon4 c.T2347G p.X783G TGCCTCAACTCCA . 91.0 34.0 67.0 0.0 . 69 . . . none . . PASS Atlas-SNP ABP1 26 hgsc.bcm.edu hg19 7 150554944 150554944 + Silent SNP T T C novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . ABP1 NM_001091 exon2 c.T1386C p.D462D TTATGATTACATT . 63.0 23.0 51.0 0.0 . 92 . . . none . . PASS Atlas-SNP TNFRSF10D 8793 hgsc.bcm.edu hg19 8 23012460 23012460 + Missense_Mutation SNP C C A novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . TNFRSF10D NM_003840 exon2 c.G183T p.Q61H TTCGTCCTGCCGG . 78.0 13.0 73.0 0.0 . 21 . . . none . . PASS Atlas-SNP TG 7038 hgsc.bcm.edu hg19 8 133953675 133953675 + Silent SNP C C A rs142766592 alternate_allele TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . TG NM_003235 exon26 c.C5121A p.P1707P CAACCCCATTGTG . 111.0 23.0 113.0 0.0 . 416 . . . alt C|1.000;T|0.000 . PASS Atlas-SNP PLEC 5339 hgsc.bcm.edu hg19 8 144999275 144999275 + Missense_Mutation SNP C C T novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . PLEC NM_201380 exon31 c.G5233A p.E1745K CCTCCTCCCGCAG . 197.0 42.0 204.0 0.0 . 1144 . . . none . . PASS Atlas-SNP PTPRD 5789 hgsc.bcm.edu hg19 9 8341183 8341183 + Missense_Mutation SNP A A C novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . PTPRD NM_002839 exon41 c.T5033G p.I1678S GGCATAATATTAA . 141.0 30.0 152.0 0.0 . 1348 . . . none . . PASS Atlas-SNP PSIP1 11168 hgsc.bcm.edu hg19 9 15472713 15472713 + Missense_Mutation SNP G G T novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . PSIP1 NM_021144 exon9 c.C894A p.H298Q CCTTCTGTGAGCA . 64.0 6.0 70.0 0.0 . 93 . . . none . . PASS Atlas-SNP MAPKAP1 79109 hgsc.bcm.edu hg19 9 128347834 128347834 + Missense_Mutation SNP T T C novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . MAPKAP1 NM_001006618 exon5 c.A671G p.N224S GATTACTTGAGCT . 55.0 11.0 74.0 0.0 . 68 . . . none . . PASS Atlas-SNP RPL7A 6130 hgsc.bcm.edu hg19 9 136215842 136215842 + Silent SNP G G A novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . RPL7A NM_000972 exon2 c.G69A p.E23E GCAGGAGGCTAAG . 50.0 9.0 54.0 0.0 . 9 . . . none . . PASS Atlas-SNP SNAPC4 6621 hgsc.bcm.edu hg19 9 139292750 139292750 + Splice_Site SNP C C A novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a SNAPC4,NS,malignant_melanoma,0,1 SNAPC4 NM_003086 exon2 c.130+1G>T . GGCTTACCTGCTT . 55.0 14.0 74.0 0.0 . 82 . . . none . . PASS Atlas-SNP SNAPC4 6621 hgsc.bcm.edu hg19 9 139292751 139292751 + Missense_Mutation SNP C C A rs7031489 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . SNAPC4 NM_003086 exon1 c.G130T p.D44Y GCTTACCTGCTTC . 59.0 14.0 73.0 0.0 . 82 . . . alt C|0.991;T|0.009 . PASS Atlas-SNP PIP4K2A 5305 hgsc.bcm.edu hg19 10 22862322 22862322 + Missense_Mutation SNP A A G novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . PIP4K2A NM_005028 exon5 c.T557C p.V186A CCATCAACATTAA . 128.0 19.0 122.0 0.0 . 59 . . . none . . PASS Atlas-SNP JMJD1C 221037 hgsc.bcm.edu hg19 10 64976992 64976992 + Missense_Mutation SNP C C T novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . JMJD1C NM_032776 exon5 c.G653A p.R218H ATGGTGCGGGTGA . 72.0 10.0 65.0 0.0 . 347 . . . none . . PASS Atlas-SNP DDX21 9188 hgsc.bcm.edu hg19 10 70734488 70734488 + Missense_Mutation SNP A A C novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . DDX21 NM_004728 exon11 c.A1731C p.K577N CAGCAAAGATGCC . 101.0 24.0 91.0 0.0 . 57 . . . none . . PASS Atlas-SNP DNAJB12 54788 hgsc.bcm.edu hg19 10 74114543 74114543 + Missense_Mutation SNP T T C novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . DNAJB12 NM_017626 exon1 c.A215G p.Y72C GTCGGATACAGCC . 38.0 9.0 44.0 0.0 . 22 . . . none . . PASS Atlas-SNP CPN1 1369 hgsc.bcm.edu hg19 10 101802229 101802229 + Silent SNP T T C novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . CPN1 NM_001308 exon9 c.A1332G p.R444R TTTCTTTCTGGCT . 61.0 7.0 59.0 0.0 . 62 . . . none . . PASS Atlas-SNP GPAM 57678 hgsc.bcm.edu hg19 10 113924282 113924282 + Splice_Site SNP C C A novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . GPAM NM_020918 exon14 c.1307+1G>T . ATTTTACCTTGAA . 90.0 22.0 82.0 0.0 . 68 . . . none . . PASS Atlas-SNP PIK3C2A 5286 hgsc.bcm.edu hg19 11 17113603 17113603 + Missense_Mutation SNP A A C novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . PIK3C2A NM_002645 exon29 c.T4582G p.C1528G AAGTACAAACAAG . 139.0 20.0 173.0 0.0 . 148 . . . none . . PASS Atlas-SNP FNBP4 23360 hgsc.bcm.edu hg19 11 47745677 47745677 + Silent SNP T T G novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . FNBP4 NM_015308 exon14 c.A2367C p.I789I CCTCTTTATTCCT . 79.0 15.0 72.0 0.0 . 99 . . . none . . PASS Atlas-SNP WNK1 65125 hgsc.bcm.edu hg19 12 1017829 1017829 + Silent SNP G G C novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . WNK1 NM_001184985 exon28 c.G7800C p.T2600T TGGGACGGGTGGC . 110.0 19.0 107.0 0.0 . 403 . . . none . . PASS Atlas-SNP CS 1431 hgsc.bcm.edu hg19 12 56669848 56669848 + Missense_Mutation SNP G G T novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . CS NM_004077 exon7 c.C720A p.F240L GTTGGTGAAATTG . 146.0 28.0 105.0 0.0 . 44 . . . none . . PASS Atlas-SNP TMTC2 160335 hgsc.bcm.edu hg19 12 83251151 83251151 + Missense_Mutation SNP T T C novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . TMTC2 NM_152588 exon2 c.T446C p.L149P TCTTTCTCCTCTC . 95.0 16.0 59.0 0.0 . 100 . . . none . . PASS Atlas-SNP TBC1D4 9882 hgsc.bcm.edu hg19 13 75898483 75898483 + Silent SNP A A T novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . TBC1D4 NM_014832 exon11 c.T2088A p.L696L ACTTGGAAGACTG . 135.0 26.0 133.0 0.0 . 142 . . . none . . PASS Atlas-SNP IRS2 8660 hgsc.bcm.edu hg19 13 110437628 110437628 + Missense_Mutation SNP T T A novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . IRS2 NM_003749 exon1 c.A773T p.E258V CCCACCTCGATGA . 68.0 14.0 72.0 0.0 . 44 . . . none . . PASS Atlas-SNP METTL3 56339 hgsc.bcm.edu hg19 14 21969115 21969115 + Missense_Mutation SNP C C G novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . METTL3 NM_019852 exon5 c.G1056C p.E352D AGCAAGCTCCTGG . 126.0 30.0 130.0 0.0 . 48 . . . none . . PASS Atlas-SNP SGPP1 81537 hgsc.bcm.edu hg19 14 64194241 64194241 + Missense_Mutation SNP T T A novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . SGPP1 NM_030791 exon1 c.A422T p.E141V AAGAGTTCGTTGC . 51.0 9.0 60.0 0.0 . 29 . . . none . . PASS Atlas-SNP PCNX 22990 hgsc.bcm.edu hg19 14 71518644 71518644 + Missense_Mutation SNP T T A novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . PCNX NM_014982 exon24 c.T4492A p.S1498T TTCTTCTCTACTC . 77.0 19.0 74.0 0.0 . 198 . . . none . . PASS Atlas-SNP DDX24 57062 hgsc.bcm.edu hg19 14 94527306 94527306 + Missense_Mutation SNP T T G novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . DDX24 NM_020414 exon4 c.A1350C p.E450D AATTAATTCCCAC . 118.0 19.0 115.0 0.0 . 82 . . . none . . PASS Atlas-SNP ADCY7 113 hgsc.bcm.edu hg19 16 50325746 50325746 + Missense_Mutation SNP C C T novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . ADCY7 NM_001114 exon3 c.C475T p.L159F TCCCACCTCCTGG . 44.0 11.0 52.0 0.0 . 90 . . . none . . PASS Atlas-SNP ASGR2 433 hgsc.bcm.edu hg19 17 7011820 7011820 + Missense_Mutation SNP A A T novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . ASGR2 NM_080912 exon4 c.T313A p.S105T TGCTCGAGGAGAA . 64.0 9.0 63.0 0.0 . 38 . . . none . . PASS Atlas-SNP TMEM97 27346 hgsc.bcm.edu hg19 17 26646334 26646334 + Silent SNP C C A rs369813368 alternate_allele TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . TMEM97 NM_014573 exon1 c.C69A p.P23P CATCCCCATCACC . 130.0 22.0 109.0 0.0 . 27 . . . alt . . PASS Atlas-SNP EXOC7 23265 hgsc.bcm.edu hg19 17 74090635 74090635 + Missense_Mutation SNP C C T novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . EXOC7 NM_001145298 exon6 c.G668A p.R223H CTGGAGCGTATCT . 119.0 7.0 92.0 0.0 . 47 . . . none . . PASS Atlas-SNP AFG3L2 10939 hgsc.bcm.edu hg19 18 12329586 12329586 + Missense_Mutation SNP G G A rs372136184 TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . AFG3L2 NM_006796 exon17 c.C2372T p.P791L TCACCCGGGGGCT . 98.0 17.0 108.0 0.0 . 60 . . . weak . . PASS Atlas-SNP ILVBL 10994 hgsc.bcm.edu hg19 19 15226999 15226999 + Missense_Mutation SNP C C G novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . ILVBL NM_006844 exon12 c.G1435C p.V479L GCTGTACCAGATG . 59.0 11.0 51.0 0.0 . 54 . . . none . . PASS Atlas-SNP PGLYRP2 114770 hgsc.bcm.edu hg19 19 15587251 15587251 + Missense_Mutation SNP T T A novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . PGLYRP2 NM_052890 exon2 c.A230T p.N77I GTAGCATTGAGGC . 81.0 14.0 91.0 0.0 . 116 . . . none . . PASS Atlas-SNP NR2F6 2063 hgsc.bcm.edu hg19 19 17343235 17343235 + Missense_Mutation SNP G G A novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . NR2F6 NM_005234 exon4 c.C1141T p.P381S CAATGGGCGTCTT . 102.0 18.0 108.0 0.0 . 18 . . . none . . PASS Atlas-SNP ZNF99 7652 hgsc.bcm.edu hg19 19 22940373 22940373 + Missense_Mutation SNP T T C novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a ZNF99,NS,carcinoma,0,4 ZNF99 NM_001080409 exon4 c.A2338G p.K780E TTATCTTATGTTT . 30.0 2.0 21.0 0.0 . 273 . . . none . . PASS Atlas-SNP ZNF91 7644 hgsc.bcm.edu hg19 19 23544826 23544826 + Missense_Mutation SNP C C G novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . ZNF91 NM_003430 exon4 c.G955C p.E319Q GTTTCTCTCCAGT . 77.0 15.0 79.0 0.0 . 349 . . . none . . PASS Atlas-SNP CLASRP 11129 hgsc.bcm.edu hg19 19 45555367 45555367 + Silent SNP A A C novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . CLASRP NM_007056 exon3 c.A138C p.R46R TGGCCGAGCTTGC . 41.0 10.0 30.0 0.0 . 44 . . . none . . PASS Atlas-SNP FTL 2512 hgsc.bcm.edu hg19 19 49469662 49469662 + Missense_Mutation SNP A A G rs17856437 TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . FTL NM_000146 exon3 c.A374G p.H125R ACCCCCATGTACG . 119.0 8.0 85.0 0.0 . 19 . . . weak . . PASS Atlas-SNP ZNF628 89887 hgsc.bcm.edu hg19 19 55992961 55992961 + Missense_Mutation SNP A A T novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . ZNF628 NM_033113 exon3 c.A401T p.H134L CGTCCCACTACCA . 93.0 15.0 101.0 0.0 . 75 . . . none . . PASS Atlas-SNP C21orf62 56245 hgsc.bcm.edu hg19 21 34166443 34166443 + Missense_Mutation SNP G G A rs377322005 TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . C21orf62 NM_001162495 exon4 c.C290T p.T97M ACCAGCGTGAAGT . 89.0 20.0 93.0 0.0 . 26 . . . weak . . PASS Atlas-SNP CCDC116 164592 hgsc.bcm.edu hg19 22 21990901 21990901 + Missense_Mutation SNP G G C novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a CCDC116,lower_third,carcinoma,0,1 CCDC116 NM_152612 exon5 c.G1384C p.G462R CAGCTGGGCTTCT . 76.0 13.0 74.0 0.0 . 56 . . . none . . PASS Atlas-SNP MN1 4330 hgsc.bcm.edu hg19 22 28194894 28194894 + Silent SNP C C T novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . MN1 NM_002430 exon1 c.G1638A p.Q546Q CTGCTGCTGCTGT . 53.0 6.0 62.0 0.0 . 122 . . . none . . PASS Atlas-SNP MAP3K15 389840 hgsc.bcm.edu hg19 X 19389154 19389154 + Missense_Mutation SNP A A C novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . MAP3K15 NM_001001671 exon24 c.T3323G p.I1108S GGCCTAATTAAGT . 191.0 78.0 202.0 0.0 . 108 . . . none . . PASS Atlas-SNP COX3 5742 hgsc.bcm.edu hg19 MT 9242 9242 + Missense_Mutation SNP A A C novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . . ENST00000362079 exon1 c.A36C p.K12N AGTAAAACCCAGC . 82.0 5.0 30.0 0.0 . . . . . none . . PASS Atlas-SNP ND4 0 hgsc.bcm.edu hg19 MT 11126 11126 + Missense_Mutation SNP G G A novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . . ENST00000361381 exon1 c.G367A p.E123K TTCTTCGAAACCA . 81.0 9.0 28.0 0.0 . . . . . none . . PASS Atlas-SNP CYTB 0 hgsc.bcm.edu hg19 MT 15786 15786 + Missense_Mutation SNP T T C rs373696707 bycluster TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . . ENST00000361789 exon1 c.T1040C p.F347S ACCCTTTTACCAT . 76.0 11.0 22.0 0.0 . . . . . weak T|0.999;C|0.001 0.001 PASS Atlas-SNP ADCY6 112 hgsc.bcm.edu hg19 12 49171962 49171964 + In_Frame_Del DEL GCT GCT - novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 GCT GCT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . ADCY6 NM_015270 exon2 c.942_944del p.314_315del . . 159.0 61.0 137.0 0.0 . 81 . 0.383648 0 none . . PASS Atlas-Indel,Pindel DIDO1 11083 hgsc.bcm.edu hg19 20 61527694 61527695 + Frame_Shift_Ins INS - - T novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . DIDO1 NM_080797 exon8 c.2105_2106insA p.I702fs . . 118.0 30.0 128.0 0.0 . 321 . 0.254237 0 none . . PASS Atlas-Indel,Pindel ARHGAP24 83478 hgsc.bcm.edu hg19 4 86916509 86916510 + Frame_Shift_Ins INS - - C novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a .,2 ARHGAP24 NM_001025616 exon9 c.1702_1703insC p.S568fs . . 101.0 14.0 112.0 0.0 . 116 . 0.138614 0 none . . PASS Atlas-INDEL SIMC1 375484 hgsc.bcm.edu hg19 5 175772284 175772294 + Frame_Shift_Del DEL GAGAAGCAGAT GAGAAGCAGAT - novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 GAGAAGCAGAT GAGAAGCAGAT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . . NM_198567 exon9 c.1209_1219del p.403_407del . . 182.0 25.0 187.0 0.0 . . . 0.137363 0 none . . PASS Atlas-Indel,Pindel EYS 346007 hgsc.bcm.edu hg19 6 64574111 64574111 + Frame_Shift_Del DEL G G - novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . EYS NM_001142800 exon36 c.7197delA p.P2399fs . . 93.0 19.0 77.0 0.0 . 527 . 0.204301 0 none . . PASS Atlas-Indel,Pindel KSR1 8844 hgsc.bcm.edu hg19 17 25919630 25919630 + Frame_Shift_Del DEL T T - novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . KSR1 NM_014238 exon9 c.865delC p.L289fs . . 78.0 20.0 50.0 0.0 . 151 . 0.25641 0 none . . PASS Atlas-Indel,Pindel FAT1 2195 hgsc.bcm.edu hg19 4 187629592 187629593 + Frame_Shift_Ins INS - - A novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . FAT1 NM_005245 exon2 c.1390_1391insT p.T464fs . . 103.0 25.0 109.0 0.0 . 500 . 0.242718 0 none . . PASS Atlas-Indel,Pindel TLR1 7096 hgsc.bcm.edu hg19 4 38800432 38800432 + Frame_Shift_Del DEL A A - novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . TLR1 NM_003263 exon4 c.22delG p.A8fs . . 317.0 70.0 285.0 0.0 . 70 . 0.22082 0 none . . PASS Atlas-Indel,Pindel MLL3 58508 hgsc.bcm.edu hg19 7 151856014 151856014 + Frame_Shift_Del DEL C C - novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . MLL3 NM_170606 exon44 c.11605delA p.K3869fs . . 98.0 14.0 63.0 0.0 . 1564 . 0.142857 0 none . . PASS Atlas-Indel,Pindel ZNF627 199692 hgsc.bcm.edu hg19 19 11728063 11728063 + Frame_Shift_Del DEL A A - novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . ZNF627 NM_145295 exon4 c.744delT p.D248fs . . 132.0 21.0 138.0 0.0 . 43 . 0.159091 0 none . . PASS Atlas-Indel,Pindel POMT1 10585 hgsc.bcm.edu hg19 9 134394275 134394276 + Frame_Shift_Del DEL GG GG - novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 GG GG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . POMT1 NM_007171 exon15 c.1482_1483del p.494_495del . . 110.0 17.0 124.0 0.0 . 59 . 0.154545 0 none . . PASS Atlas-Indel,Pindel ZNF628 89887 hgsc.bcm.edu hg19 19 55992958 55992958 + Frame_Shift_Del DEL C C - novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . ZNF628 NM_033113 exon3 c.397delT p.S133fs . . 90.0 15.0 98.0 0.0 . 75 . 0.166667 0 none . . PASS Atlas-INDEL HTR3D 200909 hgsc.bcm.edu hg19 3 183756708 183756709 + Frame_Shift_Ins INS - - T novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . HTR3D NM_001163646 exon8 c.1310_1311insT p.Y437fs . . 140.0 33.0 139.0 0.0 . 65 . 0.235714 0 none . . PASS Atlas-Indel,Pindel FOXJ1 2302 hgsc.bcm.edu hg19 17 74136299 74136299 + Frame_Shift_Del DEL G G - novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . FOXJ1 NM_001454 exon2 c.179delA p.H60fs . . 45.0 18.0 60.0 0.0 . 11 . 0.4 0 none . . PASS Atlas-Indel,Pindel CROCC 9696 hgsc.bcm.edu hg19 1 17256398 17256398 + Frame_Shift_Del DEL C C - novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . CROCC NM_014675 exon4 c.408delG p.G136fs . . 54.0 10.0 54.0 0.0 . 185 . 0.185185 0 none . . PASS Atlas-INDEL TRIP11 9321 hgsc.bcm.edu hg19 14 92469868 92469876 + In_Frame_Del DEL CTCTTGTAA CTCTTGTAA - novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 CTCTTGTAA CTCTTGTAA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . TRIP11 NM_004239 exon11 c.4445_4453del p.1482_1485del . . 99.0 13.0 83.0 0.0 . 184 . 0.131313 0 none . . PASS Atlas-Indel,Pindel C3orf22 152065 hgsc.bcm.edu hg19 3 126270916 126270916 + Frame_Shift_Del DEL C C - novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . C3orf22 NM_152533 exon3 c.140delT p.V47fs . . 61.0 18.0 45.0 0.0 . 17 . 0.295082 0 none . . PASS Atlas-Indel,Pindel TSR1 55720 hgsc.bcm.edu hg19 17 2238104 2238110 + Frame_Shift_Del DEL AGCGCTT AGCGCTT - novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 AGCGCTT AGCGCTT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . TSR1 NM_018128 exon5 c.638_644del p.213_215del . . 92.0 23.0 86.0 0.0 . 57 . 0.25 0 none . . PASS Atlas-Indel,Pindel ZNF628 89887 hgsc.bcm.edu hg19 19 55992960 55992961 + Frame_Shift_Del DEL CA CA - novel TCGA-GL-A9DD-01A-11D-A36X-10 TCGA-GL-A9DD-10A-01D-A370-10 CA CA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bd84624-b7e4-417d-aff5-1b303bb9d686 62afbca2-3422-4619-8efb-351ae7a8221a . ZNF628 NM_033113 exon3 c.399_400del p.133_134del . . 93.0 12.0 100.0 0.0 . 75 . 0.129 . none . . PASS Pindel