Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
FAM46B	115572	hgsc.bcm.edu	hg19	1	27332755	27332755	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	FAM46B	NM_052943	exon2	c.C958T	p.R320W	TGCGCCGCTGCTC	.	89.0	4.0	89.0	0.0	.	44	.	.	.	none	.	.	PASS	Atlas-SNP
FUBP1	8880	hgsc.bcm.edu	hg19	1	78414969	78414969	+	Silent	SNP	A	A	G	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	FUBP1	NM_003902	exon19	c.T1797C	p.A599A	AGTCGGAGCAGGA	.	69.0	14.0	64.0	0.0	.	112	.	.	.	none	.	.	PASS	Atlas-SNP
LRRC8C	84230	hgsc.bcm.edu	hg19	1	90179188	90179188	+	Silent	SNP	T	T	C	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	LRRC8C	NM_032270	exon3	c.T1059C	p.Y353Y	TGAGTATGTCCGT	.	146.0	36.0	142.0	0.0	.	73	.	.	.	none	.	.	PASS	Atlas-SNP
SLC19A2	10560	hgsc.bcm.edu	hg19	1	169446750	169446750	+	Silent	SNP	G	G	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	SLC19A2	NM_006996	exon2	c.C450T	p.D150D	GCCCAGGTCCACC	.	176.0	52.0	179.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
CACNA1E	777	hgsc.bcm.edu	hg19	1	181701628	181701628	+	Silent	SNP	G	G	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	CACNA1E	NM_001205293	exon20	c.G2406A	p.A802A	GGAGGCGCCGACC	.	380.0	44.0	328.0	0.0	.	778	.	.	.	none	.	.	PASS	Atlas-SNP
ADCK3	56997	hgsc.bcm.edu	hg19	1	227172964	227172964	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	ADCK3	NM_020247	exon14	c.G1582A	p.A528T	ATCAGGGCTGCTG	.	62.0	17.0	62.0	0.0	.	77	.	.	.	none	.	.	PASS	Atlas-SNP
FMN2	56776	hgsc.bcm.edu	hg19	1	240370577	240370577	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	FMN2	NM_020066	exon5	c.A2465T	p.Q822L	CTGGGCAAGGACA	.	121.0	32.0	128.0	0.0	.	451	.	.	.	none	.	.	PASS	Atlas-SNP
ABCB6	10058	hgsc.bcm.edu	hg19	2	220075010	220075010	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	ABCB6	NM_005689	exon18	c.G2362T	p.V788L	TGACCACAGTTGA	.	175.0	28.0	122.0	0.0	.	76	.	.	.	none	.	.	PASS	Atlas-SNP
TMEM43	79188	hgsc.bcm.edu	hg19	3	14183165	14183165	+	Missense_Mutation	SNP	C	C	T	rs63750743	bycluster	TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	TMEM43	NM_024334	exon12	c.C1073T	p.S358L	CCACCTCGCTGAC	.	155.0	14.0	135.0	0.0	.	33	.	.	.	weak	.	.	PASS	Atlas-SNP
SMARCC1	6599	hgsc.bcm.edu	hg19	3	47718172	47718172	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	SMARCC1	NM_003074	exon17	c.G1672T	p.V558L	CTAATACATTAAA	.	131.0	19.0	112.0	0.0	.	85	.	.	.	none	.	.	PASS	Atlas-SNP
APEH	327	hgsc.bcm.edu	hg19	3	49718019	49718019	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	APEH	NM_001640	exon14	c.T1256C	p.L419P	AGGACCTCATGGT	.	269.0	67.0	175.0	0.0	.	45	.	.	.	none	.	.	PASS	Atlas-SNP
SLC15A2	6565	hgsc.bcm.edu	hg19	3	121649781	121649781	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	SLC15A2	NM_021082	exon18	c.A1648G	p.T550A	TATAGAACTGTGC	.	199.0	31.0	157.0	0.0	.	92	.	.	.	none	.	.	PASS	Atlas-SNP
HEG1	57493	hgsc.bcm.edu	hg19	3	124748131	124748131	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	HEG1	NM_020733	exon2	c.G518A	p.S173N	GAGCCGCTCCTTC	.	241.0	56.0	195.0	0.0	.	109	.	.	.	none	.	.	PASS	Atlas-SNP
COL6A5	256076	hgsc.bcm.edu	hg19	3	130095526	130095526	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	COL6A5	NM_153264	exon3	c.G514T	p.A172S	CAGAAAGCTTCTG	.	155.0	20.0	108.0	0.0	.	205	.	.	.	none	.	.	PASS	Atlas-SNP
KLHL24	54800	hgsc.bcm.edu	hg19	3	183381404	183381404	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	KLHL24	NM_017644	exon4	c.C1079A	p.A360D	TCTGTGCTCTAAG	.	107.0	11.0	84.0	0.0	.	56	.	.	.	none	.	.	PASS	Atlas-SNP
WDFY3	23001	hgsc.bcm.edu	hg19	4	85716095	85716095	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	WDFY3	NM_014991	exon20	c.C3205A	p.P1069T	TTGTAGGAGCATT	.	404.0	105.0	357.0	0.0	.	314	.	.	.	none	.	.	PASS	Atlas-SNP
STPG2	285555	hgsc.bcm.edu	hg19	4	98893529	98893529	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	.	NM_174952	exon7	c.A835G	p.K279E	GTTTCTTTGAGCA	.	220.0	41.0	248.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
NR3C2	4306	hgsc.bcm.edu	hg19	4	149356416	149356416	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	NR3C2	NM_001166104	exon2	c.A1597G	p.I533V	AAGATATTGTACC	.	216.0	54.0	200.0	0.0	.	94	.	.	.	none	.	.	PASS	Atlas-SNP
C5orf42	65250	hgsc.bcm.edu	hg19	5	37121780	37121780	+	Silent	SNP	A	A	G	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	C5orf42	NM_023073	exon48	c.T8962C	p.L2988L	TAGGCAATGGTTT	.	701.0	235.0	445.0	1.0	.	422	.	.	.	none	.	.	PASS	Atlas-SNP
ADAMTS6	11174	hgsc.bcm.edu	hg19	5	64587271	64587271	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	ADAMTS6	NM_197941	exon11	c.A1397T	p.N466I	GGCTCATTATCAA	.	326.0	50.0	171.0	0.0	.	174	.	.	.	none	.	.	PASS	Atlas-SNP
UTP15	84135	hgsc.bcm.edu	hg19	5	72864379	72864379	+	Silent	SNP	T	T	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	UTP15	NM_032175	exon4	c.T318A	p.L106L	TCAACTTTTTGAT	.	187.0	33.0	115.0	0.0	.	30	.	.	.	none	.	.	PASS	Atlas-SNP
RAPGEF6	51735	hgsc.bcm.edu	hg19	5	130767032	130767032	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	RAPGEF6	NM_001164387	exon28	c.T4024A	p.L1342M	GCTTCAAGAGTGT	.	89.0	4.0	59.0	0.0	.	361	.	.	.	none	.	.	PASS	Atlas-SNP
DEFB113	245927	hgsc.bcm.edu	hg19	6	49936558	49936558	+	Silent	SNP	T	T	C	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	DEFB113	NM_001037729	exon2	c.A81G	p.E27E	TGCAACTTCTCTT	.	85.0	15.0	57.0	0.0	.	18	.	.	.	none	.	.	PASS	Atlas-SNP
PKHD1	5314	hgsc.bcm.edu	hg19	6	51750667	51750667	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	PKHD1	NM_170724	exon45	c.C7213A	p.Q2405K	TTACCTGGGCACC	.	130.0	29.0	136.0	0.0	.	927	.	.	.	none	.	.	PASS	Atlas-SNP
ALDH8A1	64577	hgsc.bcm.edu	hg19	6	135260502	135260502	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	ALDH8A1	NM_022568	exon4	c.T494C	p.I165T	GGAGCTATCTTCC	.	128.0	17.0	106.0	0.0	.	68	.	.	.	none	.	.	PASS	Atlas-SNP
SCAF8	22828	hgsc.bcm.edu	hg19	6	155154048	155154048	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	SCAF8	NM_014892	exon20	c.G3335A	p.G1112D	ATGGTGGTCCAAA	.	216.0	40.0	199.0	0.0	.	122	.	.	.	none	.	.	PASS	Atlas-SNP
LPA	4018	hgsc.bcm.edu	hg19	6	161071523	161071523	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	LPA	NM_005577	exon3	c.C56A	p.P19H	TGCTCAGGTGCTG	.	109.0	16.0	95.0	0.0	.	237	.	.	.	none	.	.	PASS	Atlas-SNP
METTL2B	55798	hgsc.bcm.edu	hg19	7	128119287	128119287	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	METTL2B	NM_018396	exon3	c.G278T	p.R93I	AGGATAGACATTG	.	481.0	67.0	390.0	0.0	.	34	.	.	.	none	.	.	PASS	Atlas-SNP
TAS2R39	259285	hgsc.bcm.edu	hg19	7	142880641	142880641	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	TAS2R39	NM_176881	exon1	c.G130A	p.E44K	CTTGCTGAATACC	.	188.0	13.0	106.0	0.0	.	42	.	.	.	none	.	.	PASS	Atlas-SNP
REPIN1	29803	hgsc.bcm.edu	hg19	7	150069172	150069172	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	REPIN1	NM_001099695	exon3	c.C1013A	p.S338X	TGACTTCGCACCG	.	52.0	9.0	35.0	0.0	.	74	.	.	.	none	.	.	PASS	Atlas-SNP
MTUS1	57509	hgsc.bcm.edu	hg19	8	17612803	17612803	+	Missense_Mutation	SNP	A	A	G	rs374892928	alternate_allele	TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	MTUS1	NM_001001924	exon2	c.T514C	p.F172L	ATATAAAGGTGCA	.	224.0	34.0	191.0	0.0	.	144	.	.	.	alt	.	.	PASS	Atlas-SNP
KAT6A	7994	hgsc.bcm.edu	hg19	8	41794945	41794945	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	.	NM_001099412	exon17	c.T3181A	p.L1061I	GTTCTAATCTTGG	.	281.0	58.0	215.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
WWP1	11059	hgsc.bcm.edu	hg19	8	87423961	87423961	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	WWP1	NM_007013	exon9	c.G919C	p.A307P	TCTGAAGCTAGAA	.	111.0	18.0	109.0	0.0	.	97	.	.	.	none	.	.	PASS	Atlas-SNP
PLIN2	123	hgsc.bcm.edu	hg19	9	19126158	19126158	+	Silent	SNP	C	C	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	PLIN2	NM_001122	exon3	c.G180T	p.V60V	CATGGCCACGGAG	.	263.0	49.0	207.0	0.0	.	41	.	.	.	none	.	.	PASS	Atlas-SNP
AGTPBP1	23287	hgsc.bcm.edu	hg19	9	88233969	88233969	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	AGTPBP1	NM_015239	exon17	c.G2144C	p.G715A	CGCATTCCACTGA	.	130.0	27.0	136.0	0.0	.	128	.	.	.	none	.	.	PASS	Atlas-SNP
PHPT1	29085	hgsc.bcm.edu	hg19	9	139744582	139744582	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	PHPT1	NM_001135861	exon2	c.A278G	p.Y93C	ACGGCTATTCCAT	.	179.0	30.0	120.0	0.0	.	14	.	.	.	none	.	.	PASS	Atlas-SNP
NOLC1	9221	hgsc.bcm.edu	hg19	10	103917872	103917872	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	NOLC1	NM_004741	exon5	c.G508A	p.D170N	GATTCTGATTCTG	.	193.0	35.0	162.0	0.0	.	61	.	.	.	none	.	.	PASS	Atlas-SNP
OR2AG2	338755	hgsc.bcm.edu	hg19	11	6789370	6789370	+	Silent	SNP	G	G	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	OR2AG2,caecum,carcinoma,0,1	OR2AG2	NM_001004490	exon1	c.C819A	p.I273I	AGAGATGATGTTG	.	456.0	86.0	332.0	0.0	.	55	.	.	.	none	.	.	PASS	Atlas-SNP
RBM14	10432	hgsc.bcm.edu	hg19	11	66384484	66384484	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	RBM14	NM_001198837	exon1	c.T293C	p.L98P	GCAGCCTCTTCGA	.	67.0	8.0	63.0	0.0	.	59	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA1377	57562	hgsc.bcm.edu	hg19	11	101832493	101832493	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	KIAA1377	NM_020802	exon6	c.C727G	p.Q243E	GTTAATCAGATAA	.	73.0	14.0	57.0	0.0	.	111	.	.	.	none	.	.	PASS	Atlas-SNP
CACNA1C	775	hgsc.bcm.edu	hg19	12	2763057	2763057	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	Q6YL47_HUMAN,right_upper_lobe,carcinoma,0,5	CACNA1C	NM_199460	exon35	c.C4275T	p.I1425I	GGTGATCGGGATG	.	109.0	27.0	69.0	0.0	.	1023	.	.	.	none	.	.	PASS	Atlas-SNP
A2M	2	hgsc.bcm.edu	hg19	12	9242617	9242617	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	A2M	NM_000014	exon21	c.A2599T	p.N867Y	TCACATTTCCTGA	.	171.0	35.0	144.0	0.0	.	180	.	.	.	none	.	.	PASS	Atlas-SNP
PTPRB	5787	hgsc.bcm.edu	hg19	12	71002988	71002988	+	Silent	SNP	G	G	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	PTPRB	NM_001109754	exon4	c.C840T	p.T280T	CCCCAGGGTGTCA	.	372.0	77.0	275.0	0.0	.	676	.	.	.	none	.	.	PASS	Atlas-SNP
PGAM5	192111	hgsc.bcm.edu	hg19	12	133294130	133294130	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	PGAM5	NM_138575	exon3	c.T476C	p.I159T	CCGATATCATCAG	.	43.0	4.0	29.0	0.0	.	18	.	.	.	none	.	.	PASS	Atlas-SNP
MTRF1	9617	hgsc.bcm.edu	hg19	13	41791352	41791352	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	MTRF1	NM_004294	exon10	c.G1237A	p.G413S	TCCCACCACATAA	.	181.0	38.0	131.0	0.0	.	24	.	.	.	none	.	.	PASS	Atlas-SNP
BCL2L2-PABPN1	100529063	hgsc.bcm.edu	hg19	14	23776985	23776985	+	Silent	SNP	C	C	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	.	NM_001199864	exon3	c.C9A	p.T3T	GGCGACCCCAGCC	.	83.0	26.0	80.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
MAP1A	4130	hgsc.bcm.edu	hg19	15	43817788	43817788	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	MAP1A	NM_002373	exon4	c.A4117G	p.T1373A	GACAAAACTCTGG	.	171.0	52.0	151.0	0.0	.	189	.	.	.	none	.	.	PASS	Atlas-SNP
NUBP2	10101	hgsc.bcm.edu	hg19	16	1837738	1837738	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	NUBP2	NM_012225	exon4	c.A395G	p.D132G	TGGTGGACACGCC	.	141.0	6.0	97.0	0.0	.	25	.	.	.	none	.	.	PASS	Atlas-SNP
CCP110	9738	hgsc.bcm.edu	hg19	16	19548820	19548820	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	CCP110	NM_001199022	exon4	c.A1829T	p.E610V	TAACTGAACAAGA	.	235.0	40.0	184.0	0.0	.	57	.	.	.	none	.	.	PASS	Atlas-SNP
CCP110	9738	hgsc.bcm.edu	hg19	16	19548822	19548822	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	CCP110	NM_001199022	exon4	c.C1831A	p.Q611K	ACTGAACAAGAAA	.	234.0	40.0	181.0	0.0	.	57	.	.	.	none	.	.	PASS	Atlas-SNP
PRR14	78994	hgsc.bcm.edu	hg19	16	30666137	30666137	+	Silent	SNP	G	G	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	PRR14	NM_024031	exon8	c.G846A	p.L282L	GAAGCTGGAGTTG	.	37.0	6.0	37.0	0.0	.	45	.	.	.	none	.	.	PASS	Atlas-SNP
FBXL19	54620	hgsc.bcm.edu	hg19	16	30958111	30958111	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	FBXL19	NM_001099784	exon10	c.A1748G	p.E583G	GTTTGGAGCTGAC	.	100.0	4.0	102.0	0.0	.	74	.	.	.	none	.	.	PASS	Atlas-SNP
ITGAX	3687	hgsc.bcm.edu	hg19	16	31374006	31374006	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	ITGAX	NM_000887	exon12	c.G1291C	p.G431R	CACACCGGGAAGG	.	523.0	116.0	371.0	0.0	.	198	.	.	.	none	.	.	PASS	Atlas-SNP
PPM1E	22843	hgsc.bcm.edu	hg19	17	56833454	56833454	+	Silent	SNP	G	G	A	rs77856248		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	PPM1E,colon,carcinoma,0,1	PPM1E	NM_014906	exon1	c.G96A	p.E32E	GCCGGAGCCGGAA	.	78.0	14.0	54.0	0.0	.	97	.	.	.	weak	.	.	PASS	Atlas-SNP
PPM1E	22843	hgsc.bcm.edu	hg19	17	56833457	56833457	+	Silent	SNP	G	G	C	rs74256772		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	PPM1E,colon,carcinoma,0,1	PPM1E	NM_014906	exon1	c.G99C	p.P33P	GGAGCCGGAACCC	.	76.0	17.0	50.0	0.0	.	97	.	.	.	weak	.	.	PASS	Atlas-SNP
PPM1E	22843	hgsc.bcm.edu	hg19	17	56833490	56833490	+	Silent	SNP	G	G	A	rs59676153		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	PPM1E,colon,carcinoma,0,1	PPM1E	NM_014906	exon1	c.G132A	p.E44E	ACCCGAGTCCGAG	.	97.0	9.0	65.0	0.0	.	97	.	.	.	weak	.	.	PASS	Atlas-SNP
ZNF236	7776	hgsc.bcm.edu	hg19	18	74680294	74680294	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	ZNF236	NM_007345	exon31	c.G5537T	p.X1846L	TCTTCTGATGCGA	.	72.0	4.0	56.0	0.0	.	325	.	.	.	none	.	.	PASS	Atlas-SNP
DOT1L	84444	hgsc.bcm.edu	hg19	19	2210830	2210830	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	DOT1L	NM_032482	exon14	c.C1327T	p.Q443X	GTGTCTCAGACGG	.	151.0	35.0	98.0	0.0	.	205	.	.	.	none	.	.	PASS	Atlas-SNP
HAPLN4	404037	hgsc.bcm.edu	hg19	19	19371725	19371725	+	Silent	SNP	G	G	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	HAPLN4	NM_023002	exon3	c.C381T	p.S127S	GACCAGGGAGGCA	.	50.0	12.0	64.0	0.0	.	44	.	.	.	none	.	.	PASS	Atlas-SNP
GRAMD1A	57655	hgsc.bcm.edu	hg19	19	35500151	35500151	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	GRAMD1A	NM_020895	exon2	c.A137C	p.D46A	GATCAGATAGCTC	.	138.0	22.0	72.0	0.0	.	39	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF749	388567	hgsc.bcm.edu	hg19	19	57956504	57956504	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	ZNF749	NM_001023561	exon3	c.C1988T	p.T663I	TTCATACTGGAGA	.	86.0	4.0	82.0	0.0	.	75	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF418	147686	hgsc.bcm.edu	hg19	19	58438722	58438722	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	ZNF418	NM_133460	exon4	c.A827T	p.H276L	CGCTGATGCTGAA	.	172.0	34.0	142.0	0.0	.	76	.	.	.	none	.	.	PASS	Atlas-SNP
CST9L	128821	hgsc.bcm.edu	hg19	20	23546696	23546696	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	CST9L	NM_080610	exon2	c.A269C	p.E90A	AGTAGCTCCATTG	.	338.0	67.0	244.0	0.0	.	25	.	.	.	none	.	.	PASS	Atlas-SNP
RBM12	10137	hgsc.bcm.edu	hg19	20	34240740	34240740	+	Silent	SNP	A	A	G	rs376657170	alternate_allele	TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	RBM12,rectum,carcinoma,0,2	RBM12	NM_001198840	exon2	c.T2505C	p.P835P	TGGGCCAGGGCCG	.	35.0	6.0	27.0	0.0	.	93	.	.	.	alt	.	.	PASS	Atlas-SNP
DHX35	60625	hgsc.bcm.edu	hg19	20	37653978	37653978	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	DHX35	NM_021931	exon18	c.C1777T	p.Q593X	AAGTTTCAAGTGC	.	222.0	42.0	186.0	0.0	.	82	.	.	.	none	.	.	PASS	Atlas-SNP
SLC9A8	23315	hgsc.bcm.edu	hg19	20	48431566	48431566	+	Silent	SNP	T	T	C	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	SLC9A8	NM_001260491	exon2	c.T48C	p.H16H	AACTCATGAGGGT	.	184.0	45.0	127.0	0.0	.	63	.	.	.	none	.	.	PASS	Atlas-SNP
MYO18B	84700	hgsc.bcm.edu	hg19	22	26422672	26422672	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	MYO18B	NM_032608	exon43	c.C6732T	p.P2244P	GCTGCCCAGTCCT	.	159.0	30.0	128.0	0.0	.	322	.	.	.	none	.	.	PASS	Atlas-SNP
BAIAP2L2	80115	hgsc.bcm.edu	hg19	22	38483172	38483172	+	Silent	SNP	G	G	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	BAIAP2L2	NM_025045	exon11	c.C1218A	p.S406S	CATGGGGGACATG	.	146.0	17.0	103.0	0.0	.	39	.	.	.	none	.	.	PASS	Atlas-SNP
SMC1B	27127	hgsc.bcm.edu	hg19	22	45785629	45785629	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	SMC1B	NM_148674	exon10	c.C1694G	p.A565G	GGTTCAGCTCTTT	.	169.0	36.0	155.0	0.0	.	215	.	.	.	none	.	.	PASS	Atlas-SNP
SHANK3	85358	hgsc.bcm.edu	hg19	22	51159826	51159826	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	SHANK3	NM_033517	exon21	c.G3523A	p.E1175K	TCACCCGAGGACA	.	213.0	39.0	177.0	0.0	.	96	.	.	.	none	.	.	PASS	Atlas-SNP
BMP15	9210	hgsc.bcm.edu	hg19	X	50658965	50658965	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	BMP15	NM_005448	exon2	c.C537T	p.N179N	GTCTAACGCTTGG	.	217.0	78.0	184.0	0.0	.	62	.	.	.	none	.	.	PASS	Atlas-SNP
ZCCHC5	203430	hgsc.bcm.edu	hg19	X	77913359	77913359	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	ZCCHC5	NM_152694	exon2	c.C559T	p.P187S	GGGGAGGTGGAAG	.	47.0	18.0	15.0	0.0	.	101	.	.	.	none	.	.	PASS	Atlas-SNP
ND5	0	hgsc.bcm.edu	hg19	MT	12957	12957	+	Silent	SNP	T	T	C	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	.	ENST00000361567	exon1	c.T621C	p.N207N	CGCTAATCCAAGC	.	39.0	30.0	19.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
YEATS2	55689	hgsc.bcm.edu	hg19	3	183476664	183476664	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	YEATS2	NM_018023	exon13	c.1566delC	p.N522fs	.	.	383.0	55.0	339.0	0.0	.	111	.	0.143603	0	none	.	.	PASS	Atlas-Indel,Pindel
MAML2	84441	hgsc.bcm.edu	hg19	11	95712439	95712440	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	MAML2	NM_032427	exon5	c.3144_3145insA	p.N1048fs	.	.	214.0	49.0	154.0	0.0	.	94	.	0.228972	0	none	.	.	PASS	Atlas-Indel,Pindel
CACNA1D	776	hgsc.bcm.edu	hg19	3	53844325	53844325	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	CACNA1D	NM_000720	exon48	c.6251delC	p.A2084fs	.	.	472.0	86.0	376.0	0.0	.	324	.	0.182203	0	none	.	.	PASS	Atlas-Indel,Pindel
SAV1	60485	hgsc.bcm.edu	hg19	14	51132105	51132106	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	SAV1	NM_021818	exon2	c.327_328del	p.109_110del	.	.	757.0	161.0	725.0	0.0	.	18	.	0.212682	0	none	.	.	PASS	Atlas-Indel,Pindel
RNF213	57674	hgsc.bcm.edu	hg19	17	78350139	78350141	+	In_Frame_Del	DEL	GAT	GAT	-	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	GAT	GAT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	RNF213	NM_001256071	exon52	c.13223_13225del	p.4408_4409del	.	.	253.0	32.0	159.0	0.0	.	766	.	0.126482	0	none	.	.	PASS	Atlas-Indel,Pindel
RBMXL1	494115	hgsc.bcm.edu	hg19	1	89449426	89449426	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	.	NM_019610	exon2	c.85delG	p.G29fs	.	.	503.0	53.0	522.0	0.0	.	.	.	0.105368	0	none	.	.	PASS	Atlas-Indel,Pindel
GHDC	84514	hgsc.bcm.edu	hg19	17	40344519	40344519	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	GHDC	NM_032484	exon5	c.630delC	p.F210fs	.	.	194.0	19.0	132.0	0.0	.	63	.	0.0979381	0	none	.	.	PASS	Atlas-Indel,Pindel
IQGAP3	128239	hgsc.bcm.edu	hg19	1	156517916	156517917	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	IQGAP3	NM_178229	exon19	c.2253_2254del	p.751_752del	.	.	131.0	33.0	101.0	0.0	.	146	.	0.251908	0	none	.	.	PASS	Atlas-Indel,Pindel
CNGA1	1259	hgsc.bcm.edu	hg19	4	47938977	47938977	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	CNGA1	NM_001142564	exon10	c.1742delT	p.I581fs	.	.	176.0	29.0	189.0	0.0	.	74	.	0.164773	0	none	.	.	PASS	Atlas-Indel,Pindel
CCDC112	153733	hgsc.bcm.edu	hg19	5	114603580	114603581	+	Frame_Shift_Ins	INS	-	-	TT	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	CCDC112	NM_001040440	exon10	c.1583_1584insAA	p.R528fs	.	.	238.0	31.0	238.0	0.0	.	55	.	0.130252	0	none	.	.	PASS	Atlas-Indel,Pindel
DNHD1	144132	hgsc.bcm.edu	hg19	11	6561201	6561201	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	DNHD1	NM_144666	exon18	c.3515delT	p.F1172fs	.	.	219.0	19.0	170.0	0.0	.	198	.	0.086758	0	none	.	.	PASS	Atlas-Indel,Pindel
MMD	23531	hgsc.bcm.edu	hg19	17	53485137	53485138	+	Frame_Shift_Ins	INS	-	-	AG	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	MMD	NM_012329	exon4	c.314_315insCT	p.Y105fs	.	.	115.0	31.0	114.0	0.0	.	26	.	0.269565	0	none	.	.	PASS	Atlas-Indel,Pindel
NPTX2	4885	hgsc.bcm.edu	hg19	7	98257767	98257767	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	NPTX2	NM_002523	exon5	c.1121delG	p.S374fs	.	.	250.0	30.0	170.0	0.0	.	45	.	0.120	.	none	.	.	PASS	Pindel