Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
VPS13D	55187	hgsc.bcm.edu	hg19	1	12567023	12567023	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IA-A83W-01A-11D-A34Z-10	TCGA-IA-A83W-11A-11D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b5bc3d4-904a-4ece-a4fb-4263014e4b39	da2fe768-0f46-492c-99cc-6b417fd4a40c	.	VPS13D	NM_015378	exon69	c.A12911G	p.Y4304C	TCAAATACGATGA	.	85.0	18.0	70.0	0.0	.	316	.	.	.	none	.	.	PASS	Atlas-SNP
COL11A1	1301	hgsc.bcm.edu	hg19	1	103471851	103471851	+	Silent	SNP	A	A	G	novel		TCGA-IA-A83W-01A-11D-A34Z-10	TCGA-IA-A83W-11A-11D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b5bc3d4-904a-4ece-a4fb-4263014e4b39	da2fe768-0f46-492c-99cc-6b417fd4a40c	.	COL11A1	NM_080629	exon16	c.T1740C	p.G580G	AGGGGGACCCTGG	.	174.0	7.0	163.0	0.0	.	972	.	.	.	none	.	.	PASS	Atlas-SNP
GABPB2	126626	hgsc.bcm.edu	hg19	1	151079554	151079554	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IA-A83W-01A-11D-A34Z-10	TCGA-IA-A83W-11A-11D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b5bc3d4-904a-4ece-a4fb-4263014e4b39	da2fe768-0f46-492c-99cc-6b417fd4a40c	.	GABPB2	NM_144618	exon7	c.T778C	p.S260P	GACTCATCAATCC	.	50.0	12.0	43.0	0.0	.	41	.	.	.	none	.	.	PASS	Atlas-SNP
BIRC6	57448	hgsc.bcm.edu	hg19	2	32754825	32754825	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IA-A83W-01A-11D-A34Z-10	TCGA-IA-A83W-11A-11D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b5bc3d4-904a-4ece-a4fb-4263014e4b39	da2fe768-0f46-492c-99cc-6b417fd4a40c	.	BIRC6	NM_016252	exon60	c.T12028C	p.S4010P	TTGGGATCAAGAG	.	80.0	36.0	87.0	0.0	.	838	.	.	.	none	.	.	PASS	Atlas-SNP
ORC2	4999	hgsc.bcm.edu	hg19	2	201814321	201814321	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-IA-A83W-01A-11D-A34Z-10	TCGA-IA-A83W-11A-11D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b5bc3d4-904a-4ece-a4fb-4263014e4b39	da2fe768-0f46-492c-99cc-6b417fd4a40c	.	ORC2	NM_006190	exon5	c.A284T	p.Y95F	AAAGAATAAACTT	.	181.0	64.0	200.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
IGFBP2	3485	hgsc.bcm.edu	hg19	2	217528687	217528687	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IA-A83W-01A-11D-A34Z-10	TCGA-IA-A83W-11A-11D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b5bc3d4-904a-4ece-a4fb-4263014e4b39	da2fe768-0f46-492c-99cc-6b417fd4a40c	IGFBP2,NS,carcinoma,0,1	IGFBP2	NM_000597	exon4	c.C838T	p.R280C	GGGCAGCGTGGGG	.	118.0	35.0	138.0	0.0	.	25	.	.	.	none	.	.	PASS	Atlas-SNP
STK11IP	114790	hgsc.bcm.edu	hg19	2	220477901	220477901	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IA-A83W-01A-11D-A34Z-10	TCGA-IA-A83W-11A-11D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b5bc3d4-904a-4ece-a4fb-4263014e4b39	da2fe768-0f46-492c-99cc-6b417fd4a40c	.	STK11IP	NM_052902	exon20	c.G2524A	p.V842M	GTGGTTGTGTCTG	.	52.0	24.0	58.0	0.0	.	152	.	.	.	none	.	.	PASS	Atlas-SNP
BHLHE40	8553	hgsc.bcm.edu	hg19	3	5025187	5025187	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IA-A83W-01A-11D-A34Z-10	TCGA-IA-A83W-11A-11D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b5bc3d4-904a-4ece-a4fb-4263014e4b39	da2fe768-0f46-492c-99cc-6b417fd4a40c	.	BHLHE40	NM_003670	exon5	c.T1049C	p.V350A	TGCCAGTGCTATA	.	66.0	32.0	65.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
SLC4A7	9497	hgsc.bcm.edu	hg19	3	27442329	27442329	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-IA-A83W-01A-11D-A34Z-10	TCGA-IA-A83W-11A-11D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b5bc3d4-904a-4ece-a4fb-4263014e4b39	da2fe768-0f46-492c-99cc-6b417fd4a40c	.	SLC4A7	NM_003615	exon16	c.A2326C	p.N776H	TTTCATTGCTGGG	.	121.0	51.0	100.0	0.0	.	119	.	.	.	none	.	.	PASS	Atlas-SNP
GOLGA4	2803	hgsc.bcm.edu	hg19	3	37365357	37365357	+	Silent	SNP	A	A	G	novel		TCGA-IA-A83W-01A-11D-A34Z-10	TCGA-IA-A83W-11A-11D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b5bc3d4-904a-4ece-a4fb-4263014e4b39	da2fe768-0f46-492c-99cc-6b417fd4a40c	.	GOLGA4	NM_001172713	exon15	c.A2046G	p.K682K	AGACAAAGAGATT	.	124.0	39.0	125.0	0.0	.	173	.	.	.	none	.	.	PASS	Atlas-SNP
PBRM1	55193	hgsc.bcm.edu	hg19	3	52677267	52677267	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IA-A83W-01A-11D-A34Z-10	TCGA-IA-A83W-11A-11D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b5bc3d4-904a-4ece-a4fb-4263014e4b39	da2fe768-0f46-492c-99cc-6b417fd4a40c	.	PBRM1	NM_018313	exon10	c.A992G	p.Y331C	CACCGGTAATACT	.	163.0	57.0	142.0	0.0	.	1252	.	.	.	none	.	.	PASS	Atlas-SNP
ATP6V1A	523	hgsc.bcm.edu	hg19	3	113505219	113505219	+	Silent	SNP	T	T	C	novel		TCGA-IA-A83W-01A-11D-A34Z-10	TCGA-IA-A83W-11A-11D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b5bc3d4-904a-4ece-a4fb-4263014e4b39	da2fe768-0f46-492c-99cc-6b417fd4a40c	.	ATP6V1A	NM_001690	exon6	c.T705C	p.D235D	CCTTGATGCCCTT	.	142.0	65.0	94.0	0.0	.	71	.	.	.	none	.	.	PASS	Atlas-SNP
MSL2	55167	hgsc.bcm.edu	hg19	3	135870914	135870914	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IA-A83W-01A-11D-A34Z-10	TCGA-IA-A83W-11A-11D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b5bc3d4-904a-4ece-a4fb-4263014e4b39	da2fe768-0f46-492c-99cc-6b417fd4a40c	.	MSL2	NM_018133	exon2	c.T809C	p.V270A	TCCTCAACACTCA	.	71.0	14.0	51.0	0.0	.	63	.	.	.	none	.	.	PASS	Atlas-SNP
OPA1	4976	hgsc.bcm.edu	hg19	3	193335033	193335033	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IA-A83W-01A-11D-A34Z-10	TCGA-IA-A83W-11A-11D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b5bc3d4-904a-4ece-a4fb-4263014e4b39	da2fe768-0f46-492c-99cc-6b417fd4a40c	.	OPA1	NM_130836	exon4	c.T515C	p.I172T	ACAAGATTGTTGA	.	313.0	36.0	266.0	0.0	.	79	.	.	.	none	.	.	PASS	Atlas-SNP
POU5F2	134187	hgsc.bcm.edu	hg19	5	93077053	93077053	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IA-A83W-01A-11D-A34Z-10	TCGA-IA-A83W-11A-11D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b5bc3d4-904a-4ece-a4fb-4263014e4b39	da2fe768-0f46-492c-99cc-6b417fd4a40c	.	POU5F2	NM_153216	exon1	c.C217T	p.R73W	AGCCCCGGAATTC	.	50.0	18.0	35.0	0.0	.	10	.	.	.	none	.	.	PASS	Atlas-SNP
FAM153B	202134	hgsc.bcm.edu	hg19	5	175530235	175530235	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-IA-A83W-01A-11D-A34Z-10	TCGA-IA-A83W-11A-11D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b5bc3d4-904a-4ece-a4fb-4263014e4b39	da2fe768-0f46-492c-99cc-6b417fd4a40c	.	FAM153B	NM_001265615	exon12	c.A439T	p.I147F	GTTCTGATCAGGG	.	678.0	136.0	643.0	0.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
JARID2	3720	hgsc.bcm.edu	hg19	6	15513599	15513599	+	Silent	SNP	G	G	A	novel		TCGA-IA-A83W-01A-11D-A34Z-10	TCGA-IA-A83W-11A-11D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b5bc3d4-904a-4ece-a4fb-4263014e4b39	da2fe768-0f46-492c-99cc-6b417fd4a40c	.	JARID2	NM_004973	exon16	c.G3396A	p.L1132L	GCAGTTGGAGACG	.	34.0	17.0	49.0	0.0	.	135	.	.	.	none	.	.	PASS	Atlas-SNP
CCND3	896	hgsc.bcm.edu	hg19	6	41908179	41908179	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-IA-A83W-01A-11D-A34Z-10	TCGA-IA-A83W-11A-11D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b5bc3d4-904a-4ece-a4fb-4263014e4b39	da2fe768-0f46-492c-99cc-6b417fd4a40c	CCND3,NS,carcinoma,0,1	CCND3	NM_001760	exon2	c.G343C	p.E115Q	TGGTCTCGCGCAG	.	59.0	23.0	49.0	0.0	.	40	.	.	.	none	.	.	PASS	Atlas-SNP
GCM1	8521	hgsc.bcm.edu	hg19	6	52993306	52993306	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IA-A83W-01A-11D-A34Z-10	TCGA-IA-A83W-11A-11D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b5bc3d4-904a-4ece-a4fb-4263014e4b39	da2fe768-0f46-492c-99cc-6b417fd4a40c	.	GCM1	NM_003643	exon6	c.T1009C	p.F337L	GGTAAAAGGGTTC	.	61.0	15.0	54.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
KLHL31	401265	hgsc.bcm.edu	hg19	6	53516723	53516723	+	Silent	SNP	G	G	A	novel		TCGA-IA-A83W-01A-11D-A34Z-10	TCGA-IA-A83W-11A-11D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b5bc3d4-904a-4ece-a4fb-4263014e4b39	da2fe768-0f46-492c-99cc-6b417fd4a40c	.	KLHL31	NM_001003760	exon3	c.C1578T	p.R526R	CTCCCCGCGCGGC	.	24.0	8.0	22.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
GJC3	349149	hgsc.bcm.edu	hg19	7	99527002	99527002	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IA-A83W-01A-11D-A34Z-10	TCGA-IA-A83W-11A-11D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b5bc3d4-904a-4ece-a4fb-4263014e4b39	da2fe768-0f46-492c-99cc-6b417fd4a40c	GJC3,colon,carcinoma,0,1	GJC3	NM_181538	exon1	c.T242C	p.V81A	AAGATGACCTGGA	.	48.0	23.0	47.0	0.0	.	18	.	.	.	none	.	.	PASS	Atlas-SNP
MET	4233	hgsc.bcm.edu	hg19	7	116423474	116423474	+	Missense_Mutation	SNP	T	T	C	rs121913245		TCGA-IA-A83W-01A-11D-A34Z-10	TCGA-IA-A83W-11A-11D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b5bc3d4-904a-4ece-a4fb-4263014e4b39	da2fe768-0f46-492c-99cc-6b417fd4a40c	MET,rectum,carcinoma,+1,5	MET	NM_001127500	exon19	c.T3803C	p.M1268T	AGTGGATGGCTTT	.	83.0	34.0	79.0	0.0	.	412	.	.	.	weak	.	.	PASS	Atlas-SNP
PPP2R2A	5520	hgsc.bcm.edu	hg19	8	26220333	26220333	+	Silent	SNP	G	G	A	novel		TCGA-IA-A83W-01A-11D-A34Z-10	TCGA-IA-A83W-11A-11D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b5bc3d4-904a-4ece-a4fb-4263014e4b39	da2fe768-0f46-492c-99cc-6b417fd4a40c	.	PPP2R2A	NM_001177591	exon7	c.G801A	p.R267R	CATGAGGGCATCT	.	76.0	25.0	49.0	0.0	.	44	.	.	.	none	.	.	PASS	Atlas-SNP
PRDM14	63978	hgsc.bcm.edu	hg19	8	70964477	70964477	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IA-A83W-01A-11D-A34Z-10	TCGA-IA-A83W-11A-11D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b5bc3d4-904a-4ece-a4fb-4263014e4b39	da2fe768-0f46-492c-99cc-6b417fd4a40c	.	PRDM14	NM_024504	exon8	c.C1551A	p.F517L	GCATTTGAAGGGC	.	83.0	34.0	117.0	0.0	.	102	.	.	.	none	.	.	PASS	Atlas-SNP
KANK1	23189	hgsc.bcm.edu	hg19	9	744586	744586	+	Silent	SNP	T	T	G	novel		TCGA-IA-A83W-01A-11D-A34Z-10	TCGA-IA-A83W-11A-11D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b5bc3d4-904a-4ece-a4fb-4263014e4b39	da2fe768-0f46-492c-99cc-6b417fd4a40c	.	KANK1	NM_001256876	exon15	c.T3993G	p.S1331S	CCAGTCTCCGGTC	.	89.0	31.0	68.0	0.0	.	231	.	.	.	none	.	.	PASS	Atlas-SNP
TESK1	7016	hgsc.bcm.edu	hg19	9	35605737	35605737	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-IA-A83W-01A-11D-A34Z-10	TCGA-IA-A83W-11A-11D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b5bc3d4-904a-4ece-a4fb-4263014e4b39	da2fe768-0f46-492c-99cc-6b417fd4a40c	.	TESK1	NM_006285	exon1	c.T121A	p.Y41N	TCCTCCTACCGGG	.	17.0	9.0	19.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
FAM53B	9679	hgsc.bcm.edu	hg19	10	126384767	126384767	+	Silent	SNP	C	C	T	novel		TCGA-IA-A83W-01A-11D-A34Z-10	TCGA-IA-A83W-11A-11D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b5bc3d4-904a-4ece-a4fb-4263014e4b39	da2fe768-0f46-492c-99cc-6b417fd4a40c	FAM53B,NS,carcinoma,0,1	FAM53B	NM_014661	exon3	c.G93A	p.K31K	ACTCATCTTCTTT	.	54.0	15.0	63.0	0.0	.	22	.	.	.	none	.	.	PASS	Atlas-SNP
OSBPL5	114879	hgsc.bcm.edu	hg19	11	3114204	3114204	+	Silent	SNP	C	C	T	novel		TCGA-IA-A83W-01A-11D-A34Z-10	TCGA-IA-A83W-11A-11D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b5bc3d4-904a-4ece-a4fb-4263014e4b39	da2fe768-0f46-492c-99cc-6b417fd4a40c	.	OSBPL5	NM_020896	exon18	c.G2025A	p.E675E	CTGTGCCTCCTCC	.	42.0	21.0	43.0	0.0	.	78	.	.	.	none	.	.	PASS	Atlas-SNP
GUCY1A2	2977	hgsc.bcm.edu	hg19	11	106810476	106810476	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IA-A83W-01A-11D-A34Z-10	TCGA-IA-A83W-11A-11D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b5bc3d4-904a-4ece-a4fb-4263014e4b39	da2fe768-0f46-492c-99cc-6b417fd4a40c	.	GUCY1A2	NM_000855	exon4	c.C916T	p.P306S	CCTGTGGAAGGTT	.	80.0	30.0	69.0	0.0	.	180	.	.	.	none	.	.	PASS	Atlas-SNP
TBRG1	84897	hgsc.bcm.edu	hg19	11	124494840	124494840	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IA-A83W-01A-11D-A34Z-10	TCGA-IA-A83W-11A-11D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b5bc3d4-904a-4ece-a4fb-4263014e4b39	da2fe768-0f46-492c-99cc-6b417fd4a40c	.	TBRG1	NM_032811	exon2	c.T164C	p.I55T	CTGCTATTTGTGA	.	240.0	87.0	204.0	0.0	.	13	.	.	.	none	.	.	PASS	Atlas-SNP
KRT6A	3853	hgsc.bcm.edu	hg19	12	52884675	52884675	+	Silent	SNP	G	G	A	rs398542		TCGA-IA-A83W-01A-11D-A34Z-10	TCGA-IA-A83W-11A-11D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b5bc3d4-904a-4ece-a4fb-4263014e4b39	da2fe768-0f46-492c-99cc-6b417fd4a40c	KRT6A,NS,carcinoma,0,3	KRT6A	NM_005554	exon4	c.C879T	p.D293D	GATCTCGTCTGTG	.	167.0	7.0	79.0	0.0	.	89	.	.	.	weak	G|1.000;|0.000	.	PASS	Atlas-SNP
MAPKBP1	23005	hgsc.bcm.edu	hg19	15	42111022	42111022	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IA-A83W-01A-11D-A34Z-10	TCGA-IA-A83W-11A-11D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b5bc3d4-904a-4ece-a4fb-4263014e4b39	da2fe768-0f46-492c-99cc-6b417fd4a40c	.	MAPKBP1	NM_001128608	exon21	c.T2176C	p.C726R	CCCAGCTGCATAT	.	76.0	22.0	77.0	0.0	.	120	.	.	.	none	.	.	PASS	Atlas-SNP
MEX3B	84206	hgsc.bcm.edu	hg19	15	82337942	82337942	+	Silent	SNP	C	C	T	novel		TCGA-IA-A83W-01A-11D-A34Z-10	TCGA-IA-A83W-11A-11D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b5bc3d4-904a-4ece-a4fb-4263014e4b39	da2fe768-0f46-492c-99cc-6b417fd4a40c	.	MEX3B	NM_032246	exon1	c.G105A	p.Q35Q	CGCGAGCTGCAGG	.	31.0	12.0	25.0	0.0	.	50	.	.	.	none	.	.	PASS	Atlas-SNP
IL32	9235	hgsc.bcm.edu	hg19	16	3119039	3119039	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IA-A83W-01A-11D-A34Z-10	TCGA-IA-A83W-11A-11D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b5bc3d4-904a-4ece-a4fb-4263014e4b39	da2fe768-0f46-492c-99cc-6b417fd4a40c	IL32,colon,carcinoma,-1,1	IL32	NM_004221	exon7	c.G250A	p.G84S	TGCCGAGGCAACA	.	193.0	25.0	187.0	1.0	.	32	.	.	.	none	.	.	PASS	Atlas-SNP
CNTNAP4	85445	hgsc.bcm.edu	hg19	16	76574667	76574667	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IA-A83W-01A-11D-A34Z-10	TCGA-IA-A83W-11A-11D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b5bc3d4-904a-4ece-a4fb-4263014e4b39	da2fe768-0f46-492c-99cc-6b417fd4a40c	.	CNTNAP4	NM_138994	exon20	c.T3203C	p.L1068P	AATCTCTGGTATT	.	91.0	30.0	68.0	0.0	.	600	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA1609	57707	hgsc.bcm.edu	hg19	16	84529314	84529314	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IA-A83W-01A-11D-A34Z-10	TCGA-IA-A83W-11A-11D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b5bc3d4-904a-4ece-a4fb-4263014e4b39	da2fe768-0f46-492c-99cc-6b417fd4a40c	.	KIAA1609	NM_020947	exon3	c.C359T	p.P120L	TTCACGGGACCTT	.	92.0	6.0	105.0	0.0	.	39	.	.	.	none	.	.	PASS	Atlas-SNP
MYH10	4628	hgsc.bcm.edu	hg19	17	8404148	8404148	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-IA-A83W-01A-11D-A34Z-10	TCGA-IA-A83W-11A-11D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b5bc3d4-904a-4ece-a4fb-4263014e4b39	da2fe768-0f46-492c-99cc-6b417fd4a40c	.	MYH10	NM_001256012	exon29	c.A3740C	p.K1247T	ACCCGCTTGGCCT	.	49.0	17.0	61.0	0.0	.	148	.	.	.	none	.	.	PASS	Atlas-SNP
DNAH9	1770	hgsc.bcm.edu	hg19	17	11696924	11696924	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-IA-A83W-01A-11D-A34Z-10	TCGA-IA-A83W-11A-11D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b5bc3d4-904a-4ece-a4fb-4263014e4b39	da2fe768-0f46-492c-99cc-6b417fd4a40c	.	DNAH9	NM_001372	exon42	c.A8166T	p.E2722D	AGAAGAAAAGGAC	.	160.0	55.0	137.0	0.0	.	695	.	.	.	none	.	.	PASS	Atlas-SNP
PCGF2	7703	hgsc.bcm.edu	hg19	17	36891741	36891741	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IA-A83W-01A-11D-A34Z-10	TCGA-IA-A83W-11A-11D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b5bc3d4-904a-4ece-a4fb-4263014e4b39	da2fe768-0f46-492c-99cc-6b417fd4a40c	.	PCGF2	NM_007144	exon11	c.A770G	p.E257G	ACTGACTCACACT	.	50.0	25.0	51.0	0.0	.	24	.	.	.	none	.	.	PASS	Atlas-SNP
ACSF2	80221	hgsc.bcm.edu	hg19	17	48541192	48541192	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IA-A83W-01A-11D-A34Z-10	TCGA-IA-A83W-11A-11D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b5bc3d4-904a-4ece-a4fb-4263014e4b39	da2fe768-0f46-492c-99cc-6b417fd4a40c	.	ACSF2	NM_025149	exon9	c.T1060C	p.Y354H	TTCCTGTATGGTA	.	70.0	17.0	59.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
ALPK2	115701	hgsc.bcm.edu	hg19	18	56246675	56246675	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IA-A83W-01A-11D-A34Z-10	TCGA-IA-A83W-11A-11D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b5bc3d4-904a-4ece-a4fb-4263014e4b39	da2fe768-0f46-492c-99cc-6b417fd4a40c	.	ALPK2	NM_052947	exon4	c.G1333A	p.E445K	CCTGTTCTGTCAC	.	90.0	36.0	111.0	0.0	.	487	.	.	.	none	.	.	PASS	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	8993026	8993026	+	Silent	SNP	G	G	A	novel		TCGA-IA-A83W-01A-11D-A34Z-10	TCGA-IA-A83W-11A-11D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b5bc3d4-904a-4ece-a4fb-4263014e4b39	da2fe768-0f46-492c-99cc-6b417fd4a40c	.	MUC16	NM_024690	exon67	c.C41733T	p.S13911S	TACAGAGCTCCGA	.	72.0	20.0	59.0	0.0	.	4315	.	.	.	none	.	.	PASS	Atlas-SNP
BRD4	23476	hgsc.bcm.edu	hg19	19	15349622	15349622	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-IA-A83W-01A-11D-A34Z-10	TCGA-IA-A83W-11A-11D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b5bc3d4-904a-4ece-a4fb-4263014e4b39	da2fe768-0f46-492c-99cc-6b417fd4a40c	.	BRD4	NM_058243	exon19	c.C3952T	p.Q1318X	TGGACTGGGGCTG	.	82.0	35.0	70.0	0.0	.	172	.	.	.	none	.	.	PASS	Atlas-SNP
ACTN4	81	hgsc.bcm.edu	hg19	19	39214666	39214666	+	Silent	SNP	C	C	T	novel		TCGA-IA-A83W-01A-11D-A34Z-10	TCGA-IA-A83W-11A-11D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b5bc3d4-904a-4ece-a4fb-4263014e4b39	da2fe768-0f46-492c-99cc-6b417fd4a40c	.	ACTN4	NM_004924	exon14	c.C1641T	p.A547A	GAGCGCCATGGAG	.	43.0	14.0	40.0	0.0	.	69	.	.	.	none	.	.	PASS	Atlas-SNP
APCDD1L	164284	hgsc.bcm.edu	hg19	20	57035951	57035951	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-IA-A83W-01A-11D-A34Z-10	TCGA-IA-A83W-11A-11D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b5bc3d4-904a-4ece-a4fb-4263014e4b39	da2fe768-0f46-492c-99cc-6b417fd4a40c	.	APCDD1L	NM_153360	exon4	c.G1401T	p.Q467H	CCTGTGCTGCGGT	.	45.0	14.0	43.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
N6AMT1	29104	hgsc.bcm.edu	hg19	21	30257571	30257571	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-IA-A83W-01A-11D-A34Z-10	TCGA-IA-A83W-11A-11D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b5bc3d4-904a-4ece-a4fb-4263014e4b39	da2fe768-0f46-492c-99cc-6b417fd4a40c	.	N6AMT1	NM_182749	exon1	c.T97A	p.L33M	CGTTCAAAAGCAG	.	95.0	43.0	68.0	0.0	.	31	.	.	.	none	.	.	PASS	Atlas-SNP
CHD8	57680	hgsc.bcm.edu	hg19	14	21860710	21860710	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-IA-A83W-01A-11D-A34Z-10	TCGA-IA-A83W-11A-11D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b5bc3d4-904a-4ece-a4fb-4263014e4b39	da2fe768-0f46-492c-99cc-6b417fd4a40c	.	CHD8	NM_001170629	exon33	c.6728delG	p.R2243fs	.	.	80.0	22.0	82.0	0.0	.	339	.	0.275	0	none	.	.	PASS	Atlas-Indel,Pindel
MIB1	57534	hgsc.bcm.edu	hg19	18	19438539	19438539	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-IA-A83W-01A-11D-A34Z-10	TCGA-IA-A83W-11A-11D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b5bc3d4-904a-4ece-a4fb-4263014e4b39	da2fe768-0f46-492c-99cc-6b417fd4a40c	MIB1,NS,carcinoma,0,1	MIB1	NM_020774	exon20	c.2811delC	p.D937fs	.	.	238.0	80.0	241.0	0.0	.	87	.	0.336134	0	none	.	.	PASS	Atlas-Indel,Pindel
RPL18A	6142	hgsc.bcm.edu	hg19	19	17974057	17974058	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-IA-A83W-01A-11D-A34Z-10	TCGA-IA-A83W-11A-11D-A34Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b5bc3d4-904a-4ece-a4fb-4263014e4b39	da2fe768-0f46-492c-99cc-6b417fd4a40c	.	RPL18A	NM_000980	exon5	c.516_517insA	p.P172fs	.	.	50.0	13.0	44.0	0.0	.	15	.	0.26	0	none	.	.	PASS	Atlas-INDEL
OR8B2	26595	hgsc.bcm.edu	hg19	11	124252506	124252516	+	Frame_Shift_Del	DEL	ACATGAGAGCT	ACATGAGAGCT	-	novel		TCGA-IA-A83W-01A-11D-A34Z-10	TCGA-IA-A83W-11A-11D-A34Z-10	ACATGAGAGCT	ACATGAGAGCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b5bc3d4-904a-4ece-a4fb-4263014e4b39	da2fe768-0f46-492c-99cc-6b417fd4a40c	.	OR8B2	NM_001005468	exon1	c.725_735del	p.242_245del	.	.	219.0	35.0	196.0	0.0	.	42	.	0.159817	0	none	.	.	PASS	Atlas-Indel,Pindel
FBXO31	79791	hgsc.bcm.edu	hg19	16	87367551	87367551	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-IA-A83W-01A-11D-A34Z-10	TCGA-IA-A83W-11A-11D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b5bc3d4-904a-4ece-a4fb-4263014e4b39	da2fe768-0f46-492c-99cc-6b417fd4a40c	.	FBXO31	NM_024735	exon8	c.1339delG	p.V447fs	.	.	60.0	22.0	54.0	0.0	.	82	.	0.366667	0	none	.	.	PASS	Atlas-Indel,Pindel
IFT80	57560	hgsc.bcm.edu	hg19	3	160018773	160018773	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-IA-A83W-01A-11D-A34Z-10	TCGA-IA-A83W-11A-11D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b5bc3d4-904a-4ece-a4fb-4263014e4b39	da2fe768-0f46-492c-99cc-6b417fd4a40c	.	IFT80	NM_020800	exon12	c.1214delC	p.S405fs	.	.	325.0	167.0	252.0	0.0	.	68	.	0.513846	0	none	.	.	PASS	Atlas-Indel,Pindel
NAGLU	4669	hgsc.bcm.edu	hg19	17	40695970	40695970	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-IA-A83W-01A-11D-A34Z-10	TCGA-IA-A83W-11A-11D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b5bc3d4-904a-4ece-a4fb-4263014e4b39	da2fe768-0f46-492c-99cc-6b417fd4a40c	.	NAGLU	NM_000263	exon6	c.1945delT	p.W649fs	.	.	33.0	16.0	29.0	0.0	.	36	.	0.484848	0	none	.	.	PASS	Atlas-Indel,Pindel
SMYD4	114826	hgsc.bcm.edu	hg19	17	1704144	1704148	+	Frame_Shift_Del	DEL	CATCT	CATCT	-	novel		TCGA-IA-A83W-01A-11D-A34Z-10	TCGA-IA-A83W-11A-11D-A34Z-10	CATCT	CATCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b5bc3d4-904a-4ece-a4fb-4263014e4b39	da2fe768-0f46-492c-99cc-6b417fd4a40c	.	SMYD4	NM_052928	exon5	c.541_545del	p.181_182del	.	.	109.0	31.0	121.0	0.0	.	50	.	0.284	.	none	.	.	PASS	Pindel