Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm SFN 2810 hgsc.bcm.edu hg19 1 27189915 27189915 + Missense_Mutation SNP A A G novel TCGA-J7-6720-01A-11D-2136-08 TCGA-J7-6720-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1 ee153c70-16dc-47aa-b326-e5341dc09b2f . SFN NM_006142 exon1 c.A212G p.E71G GCAACGAGGAGGG . 116.0 46.0 106.0 0.0 . 20 . . . none . . PASS Atlas-SNP PIAS3 10401 hgsc.bcm.edu hg19 1 145578967 145578967 + Missense_Mutation SNP C C T novel TCGA-J7-6720-01A-11D-2136-08 TCGA-J7-6720-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1 ee153c70-16dc-47aa-b326-e5341dc09b2f . PIAS3 NM_006099 exon4 c.C545T p.A182V CAGGAGCCAAATG . 131.0 48.0 126.0 0.0 . 96 . . . none . . PASS Atlas-SNP TSACC 128229 hgsc.bcm.edu hg19 1 156309583 156309583 + Splice_Site SNP G G C rs113369857 bycluster;alternate_allele TCGA-J7-6720-01A-11D-2136-08 TCGA-J7-6720-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1 ee153c70-16dc-47aa-b326-e5341dc09b2f . . NM_144627 exon2 c.34+1G>C . GAAAAGGTGTGTG . 59.0 17.0 68.0 0.0 . . . . . alt . . PASS Atlas-SNP CALCRL 10203 hgsc.bcm.edu hg19 2 188245425 188245425 + Missense_Mutation SNP A A G novel TCGA-J7-6720-01A-11D-2136-08 TCGA-J7-6720-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1 ee153c70-16dc-47aa-b326-e5341dc09b2f . CALCRL NM_001271751 exon5 c.T274C p.F92L CCTGAAAGTAATC . 67.0 34.0 41.0 0.0 . 73 . . . none . . PASS Atlas-SNP WDR12 55759 hgsc.bcm.edu hg19 2 203762106 203762106 + Missense_Mutation SNP C C T novel TCGA-J7-6720-01A-11D-2136-08 TCGA-J7-6720-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1 ee153c70-16dc-47aa-b326-e5341dc09b2f . WDR12 NM_018256 exon5 c.G371A p.R124Q CAGATCCGAGAAG . 107.0 26.0 120.0 0.0 . 35 . . . none . . PASS Atlas-SNP COL4A3 1285 hgsc.bcm.edu hg19 2 228145271 228145271 + Missense_Mutation SNP G G T novel TCGA-J7-6720-01A-11D-2136-08 TCGA-J7-6720-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1 ee153c70-16dc-47aa-b326-e5341dc09b2f . COL4A3 NM_000091 exon30 c.G2339T p.G780V TCCCTGGAACTCC . 198.0 66.0 175.0 0.0 . 293 . . . none . . PASS Atlas-SNP FBXO36 130888 hgsc.bcm.edu hg19 2 230875429 230875429 + Silent SNP A A G novel TCGA-J7-6720-01A-11D-2136-08 TCGA-J7-6720-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1 ee153c70-16dc-47aa-b326-e5341dc09b2f . FBXO36 NM_174899 exon4 c.A396G p.K132K TGATAAACTGTGG . 64.0 17.0 46.0 0.0 . 22 . . . none . . PASS Atlas-SNP TWF2 11344 hgsc.bcm.edu hg19 3 52269098 52269098 + Missense_Mutation SNP A A G novel TCGA-J7-6720-01A-11D-2136-08 TCGA-J7-6720-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1 ee153c70-16dc-47aa-b326-e5341dc09b2f . TWF2 NM_007284 exon2 c.T50C p.F17S TTGGCAAAGAATT . 103.0 33.0 80.0 0.0 . 33 . . . none . . PASS Atlas-SNP KALRN 8997 hgsc.bcm.edu hg19 3 124438147 124438147 + Missense_Mutation SNP A A G novel TCGA-J7-6720-01A-11D-2136-08 TCGA-J7-6720-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1 ee153c70-16dc-47aa-b326-e5341dc09b2f . KALRN NM_001024660 exon60 c.A8791G p.T2931A GCAGCCACATGCT . 105.0 5.0 91.0 0.0 . 556 . . . none . . PASS Atlas-SNP FNDC3B 64778 hgsc.bcm.edu hg19 3 172025192 172025192 + Silent SNP C C G rs145255541 alternate_allele TCGA-J7-6720-01A-11D-2136-08 TCGA-J7-6720-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1 ee153c70-16dc-47aa-b326-e5341dc09b2f . FNDC3B NM_001135095 exon10 c.C1101G p.S367S CTGCTCCGAGCCT . 131.0 39.0 106.0 0.0 . 118 . . . alt C|1.000;T|0.000 . PASS Atlas-SNP TBC1D14 57533 hgsc.bcm.edu hg19 4 7026865 7026865 + Missense_Mutation SNP C C A novel TCGA-J7-6720-01A-11D-2136-08 TCGA-J7-6720-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1 ee153c70-16dc-47aa-b326-e5341dc09b2f . TBC1D14 NM_001113361 exon13 c.C1892A p.T631N TCCTGACCAAGAT . 168.0 45.0 134.0 0.0 . 110 . . . none . . PASS Atlas-SNP PDLIM5 10611 hgsc.bcm.edu hg19 4 95496927 95496927 + Missense_Mutation SNP C C G rs200734812 bycluster;alternate_allele TCGA-J7-6720-01A-11D-2136-08 TCGA-J7-6720-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1 ee153c70-16dc-47aa-b326-e5341dc09b2f . PDLIM5 NM_006457 exon5 c.C452G p.T151S CCTTCACCCCAGC . 408.0 111.0 346.0 0.0 . 76 . . . alt C|0.999;T|0.001 . PASS Atlas-SNP SH3RF1 57630 hgsc.bcm.edu hg19 4 170028338 170028338 + Silent SNP A A G novel TCGA-J7-6720-01A-11D-2136-08 TCGA-J7-6720-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1 ee153c70-16dc-47aa-b326-e5341dc09b2f . SH3RF1 NM_020870 exon11 c.T2158C p.L720L ACTTCAACAAACC . 77.0 23.0 63.0 0.0 . 60 . . . none . . PASS Atlas-SNP HINT1 3094 hgsc.bcm.edu hg19 5 130500845 130500845 + Silent SNP G G T novel TCGA-J7-6720-01A-11D-2136-08 TCGA-J7-6720-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1 ee153c70-16dc-47aa-b326-e5341dc09b2f . HINT1 NM_005340 exon1 c.C54A p.I18I CCCAAAGATCGTG . 107.0 40.0 70.0 0.0 . 7 . . . none . . PASS Atlas-SNP TBC1D9B 23061 hgsc.bcm.edu hg19 5 179326225 179326225 + Silent SNP C C T novel TCGA-J7-6720-01A-11D-2136-08 TCGA-J7-6720-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1 ee153c70-16dc-47aa-b326-e5341dc09b2f . TBC1D9B NM_198868 exon3 c.G312A p.E104E ATCTTCCTCACTG . 59.0 19.0 45.0 0.0 . 157 . . . none . . PASS Atlas-SNP CDKAL1 54901 hgsc.bcm.edu hg19 6 20846322 20846322 + Missense_Mutation SNP A A G novel TCGA-J7-6720-01A-11D-2136-08 TCGA-J7-6720-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1 ee153c70-16dc-47aa-b326-e5341dc09b2f . CDKAL1 NM_017774 exon9 c.A655G p.T219A GCTTGTACCTACT . 69.0 23.0 73.0 0.0 . 55 . . . none . . PASS Atlas-SNP TJAP1 93643 hgsc.bcm.edu hg19 6 43472653 43472653 + Missense_Mutation SNP A A G novel TCGA-J7-6720-01A-11D-2136-08 TCGA-J7-6720-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1 ee153c70-16dc-47aa-b326-e5341dc09b2f . TJAP1 NM_001146016 exon11 c.A734G p.N245S TGCTCAATTCAGC . 182.0 20.0 161.0 0.0 . 35 . . . none . . PASS Atlas-SNP THBS2 7058 hgsc.bcm.edu hg19 6 169642014 169642014 + Missense_Mutation SNP C C G novel TCGA-J7-6720-01A-11D-2136-08 TCGA-J7-6720-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1 ee153c70-16dc-47aa-b326-e5341dc09b2f . THBS2 NM_003247 exon6 c.G734C p.R245P CCCAGGCGCAGCG . 91.0 34.0 92.0 0.0 . 230 . . . none . . PASS Atlas-SNP ZNF679 168417 hgsc.bcm.edu hg19 7 63726979 63726979 + Missense_Mutation SNP C C G novel TCGA-J7-6720-01A-11D-2136-08 TCGA-J7-6720-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1 ee153c70-16dc-47aa-b326-e5341dc09b2f . ZNF679 NM_153363 exon5 c.C968G p.P323R AGAAACCCTACAC . 99.0 34.0 36.0 0.0 . 80 . . . none . . PASS Atlas-SNP RELN 5649 hgsc.bcm.edu hg19 7 103292216 103292216 + Missense_Mutation SNP G G C novel TCGA-J7-6720-01A-11D-2136-08 TCGA-J7-6720-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1 ee153c70-16dc-47aa-b326-e5341dc09b2f . RELN NM_173054 exon15 c.C1784G p.T595S TGGTTGGTAGAAA . 90.0 43.0 29.0 0.0 . 593 . . . none . . PASS Atlas-SNP JPH1 56704 hgsc.bcm.edu hg19 8 75227665 75227665 + Silent SNP G G A novel TCGA-J7-6720-01A-11D-2136-08 TCGA-J7-6720-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1 ee153c70-16dc-47aa-b326-e5341dc09b2f . JPH1 NM_020647 exon2 c.C570T p.R190R ACCGCCGCGGGTG . 73.0 24.0 54.0 0.0 . 77 . . . none . . PASS Atlas-SNP FAM135B 51059 hgsc.bcm.edu hg19 8 139180285 139180285 + Missense_Mutation SNP T T C novel TCGA-J7-6720-01A-11D-2136-08 TCGA-J7-6720-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1 ee153c70-16dc-47aa-b326-e5341dc09b2f . FAM135B NM_015912 exon12 c.A1111G p.T371A TGTGCGTCTGTAT . 167.0 7.0 114.0 0.0 . 423 . . . none . . PASS Atlas-SNP CYP11B1 1584 hgsc.bcm.edu hg19 8 143956729 143956729 + Splice_Site SNP C C G novel TCGA-J7-6720-01A-11D-2136-08 TCGA-J7-6720-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1 ee153c70-16dc-47aa-b326-e5341dc09b2f . CYP11B1 NM_001026213 exon8 c.1122-1G>C . TAGAGCCTGGAGG . 40.0 16.0 35.0 0.0 . 128 . . . none . . PASS Atlas-SNP SCRIB 23513 hgsc.bcm.edu hg19 8 144895667 144895667 + Missense_Mutation SNP C C A novel TCGA-J7-6720-01A-11D-2136-08 TCGA-J7-6720-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1 ee153c70-16dc-47aa-b326-e5341dc09b2f . SCRIB NM_015356 exon5 c.G476T p.R159L TTCTCCCGGAGCT . 76.0 4.0 45.0 0.0 . 192 . . . none . . PASS Atlas-SNP MLLT3 4300 hgsc.bcm.edu hg19 9 20414373 20414373 + Silent SNP G G A novel TCGA-J7-6720-01A-11D-2136-08 TCGA-J7-6720-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1 ee153c70-16dc-47aa-b326-e5341dc09b2f MLLT3,NS,carcinoma,0,4 MLLT3 NM_004529 exon5 c.C471T p.S157S GCTGCTGCTACTG . 56.0 4.0 42.0 0.0 . 125 . . . none . . PASS Atlas-SNP DGKH 160851 hgsc.bcm.edu hg19 13 42742631 42742631 + Missense_Mutation SNP G G A novel TCGA-J7-6720-01A-11D-2136-08 TCGA-J7-6720-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1 ee153c70-16dc-47aa-b326-e5341dc09b2f . DGKH NM_001204504 exon11 c.G1174A p.G392R GGCGATGGAAGTG . 69.0 19.0 82.0 0.0 . 106 . . . none . . PASS Atlas-SNP DGKH 160851 hgsc.bcm.edu hg19 13 42742632 42742632 + Missense_Mutation SNP G G T novel TCGA-J7-6720-01A-11D-2136-08 TCGA-J7-6720-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1 ee153c70-16dc-47aa-b326-e5341dc09b2f . DGKH NM_001204504 exon11 c.G1175T p.G392V GCGATGGAAGTGT . 69.0 19.0 80.0 0.0 . 106 . . . none . . PASS Atlas-SNP HAUS4 54930 hgsc.bcm.edu hg19 14 23415759 23415759 + Missense_Mutation SNP T T A novel TCGA-J7-6720-01A-11D-2136-08 TCGA-J7-6720-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1 ee153c70-16dc-47aa-b326-e5341dc09b2f . HAUS4 NM_001166269 exon10 c.A1067T p.Q356L AACTCCTGGAGGG . 89.0 5.0 90.0 0.0 . 34 . . . none . . PASS Atlas-SNP ACIN1 22985 hgsc.bcm.edu hg19 14 23549776 23549776 + Silent SNP T T C novel TCGA-J7-6720-01A-11D-2136-08 TCGA-J7-6720-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1 ee153c70-16dc-47aa-b326-e5341dc09b2f . ACIN1 NM_001164814 exon6 c.A942G p.V314V TGGTTTTACTCTA . 182.0 54.0 160.0 0.0 . 147 . . . none . . PASS Atlas-SNP ADCY4 196883 hgsc.bcm.edu hg19 14 24793367 24793367 + Silent SNP C C A novel TCGA-J7-6720-01A-11D-2136-08 TCGA-J7-6720-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1 ee153c70-16dc-47aa-b326-e5341dc09b2f . ADCY4 NM_001198592 exon17 c.G1947T p.L649L TGCAGGCAGCCAG . 80.0 6.0 66.0 0.0 . 86 . . . none . . PASS Atlas-SNP JKAMP 51528 hgsc.bcm.edu hg19 14 59965574 59965574 + Silent SNP T T C novel TCGA-J7-6720-01A-11D-2136-08 TCGA-J7-6720-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1 ee153c70-16dc-47aa-b326-e5341dc09b2f . JKAMP NM_016475 exon5 c.T588C p.L196L TGCACTTTACTTC . 31.0 12.0 19.0 0.0 . 49 . . . none . . PASS Atlas-SNP SBK1 388228 hgsc.bcm.edu hg19 16 28330355 28330355 + Missense_Mutation SNP C C T novel TCGA-J7-6720-01A-11D-2136-08 TCGA-J7-6720-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1 ee153c70-16dc-47aa-b326-e5341dc09b2f . SBK1 NM_001024401 exon3 c.C266T p.T89I GCAAAACCAAGCT . 250.0 85.0 211.0 0.0 . 36 . . . none . . PASS Atlas-SNP PSG2 5670 hgsc.bcm.edu hg19 19 43585217 43585217 + Nonsense_Mutation SNP A A T novel TCGA-J7-6720-01A-11D-2136-08 TCGA-J7-6720-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1 ee153c70-16dc-47aa-b326-e5341dc09b2f . PSG2 NM_031246 exon2 c.T246A p.Y82X TACTACATATGAT . 513.0 141.0 456.0 0.0 . 84 . . . none . . PASS Atlas-SNP TGM6 343641 hgsc.bcm.edu hg19 20 2384361 2384361 + Missense_Mutation SNP C C T novel TCGA-J7-6720-01A-11D-2136-08 TCGA-J7-6720-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1 ee153c70-16dc-47aa-b326-e5341dc09b2f . TGM6 NM_198994 exon9 c.C1228T p.R410W GAGAGCCGGGAGC . 126.0 6.0 109.0 0.0 . 126 . . . none . . PASS Atlas-SNP COL6A2 1292 hgsc.bcm.edu hg19 21 47542788 47542788 + Splice_Site SNP G G A novel TCGA-J7-6720-01A-11D-2136-08 TCGA-J7-6720-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1 ee153c70-16dc-47aa-b326-e5341dc09b2f . COL6A2 NM_058175 exon21 c.1609-1G>A . GTCACAGGGAGGC . 93.0 31.0 91.0 0.0 . 351 . . . none . . PASS Atlas-SNP PCNT 5116 hgsc.bcm.edu hg19 21 47809247 47809247 + Missense_Mutation SNP A A T novel TCGA-J7-6720-01A-11D-2136-08 TCGA-J7-6720-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1 ee153c70-16dc-47aa-b326-e5341dc09b2f . PCNT NM_006031 exon19 c.A3741T p.E1247D CCCAGAAAGTGTG . 197.0 71.0 208.0 0.0 . 283 . . . none . . PASS Atlas-SNP OSBP2 23762 hgsc.bcm.edu hg19 22 31137192 31137192 + Missense_Mutation SNP T T A novel TCGA-J7-6720-01A-11D-2136-08 TCGA-J7-6720-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1 ee153c70-16dc-47aa-b326-e5341dc09b2f . OSBP2 NM_030758 exon2 c.T689A p.L230Q TCAACCTGTCCAC . 79.0 4.0 71.0 0.0 . 52 . . . none . . PASS Atlas-SNP SLITRK4 139065 hgsc.bcm.edu hg19 X 142718336 142718336 + Missense_Mutation SNP C C A novel TCGA-J7-6720-01A-11D-2136-08 TCGA-J7-6720-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1 ee153c70-16dc-47aa-b326-e5341dc09b2f . SLITRK4 NM_001184750 exon2 c.G589T p.G197W GAACCCCGATATA . 94.0 4.0 64.0 0.0 . 162 . . . none . . PASS Atlas-SNP GIN1 54826 hgsc.bcm.edu hg19 5 102444326 102444335 + Frame_Shift_Del DEL AGTGTAGTTG AGTGTAGTTG - novel TCGA-J7-6720-01A-11D-2136-08 TCGA-J7-6720-10A-01D-2136-08 AGTGTAGTTG AGTGTAGTTG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1 ee153c70-16dc-47aa-b326-e5341dc09b2f . GIN1 NM_017676 exon2 c.78_87del p.26_29del . . 71.0 16.0 67.0 0.0 . 53 . 0.225352 0 none . . PASS Atlas-INDEL ING4 51147 hgsc.bcm.edu hg19 12 6761549 6761549 + Frame_Shift_Del DEL C C - novel TCGA-J7-6720-01A-11D-2136-08 TCGA-J7-6720-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1 ee153c70-16dc-47aa-b326-e5341dc09b2f . ING4 NM_001127582 exon6 c.537delC p.G179fs . . 169.0 49.0 189.0 0.0 . 31 . 0.289941 0 none . . PASS Atlas-INDEL ZDHHC14 79683 hgsc.bcm.edu hg19 6 158093775 158093785 + Frame_Shift_Del DEL TTCAGAGCACC TTCAGAGCACC - novel TCGA-J7-6720-01A-11D-2136-08 TCGA-J7-6720-10A-01D-2136-08 TTCAGAGCACC TTCAGAGCACC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1 ee153c70-16dc-47aa-b326-e5341dc09b2f . ZDHHC14 NM_024630 exon9 c.1087_1097del p.363_366del . . 71.0 11.0 63.0 0.0 . 39 . 0.15493 0 none . . PASS Atlas-INDEL ACY1 95 hgsc.bcm.edu hg19 3 52020519 52020519 + Frame_Shift_Del DEL G G - novel TCGA-J7-6720-01A-11D-2136-08 TCGA-J7-6720-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1 ee153c70-16dc-47aa-b326-e5341dc09b2f . ACY1 NM_001198895 exon7 c.524delA p.E175fs . . 85.0 37.0 72.0 0.0 . 35 . 0.435294 0 none . . PASS Atlas-INDEL ZNF347 84671 hgsc.bcm.edu hg19 19 53643573 53643575 + In_Frame_Del DEL TGA TGA - novel TCGA-J7-6720-01A-11D-2136-08 TCGA-J7-6720-10A-01D-2136-08 TGA TGA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1 ee153c70-16dc-47aa-b326-e5341dc09b2f . ZNF347 NM_001172675 exon5 c.2510_2512del p.837_838del . . 170.0 46.0 193.0 0.0 . 87 . 0.270588 0 none . . PASS Atlas-INDEL GPR3 2827 hgsc.bcm.edu hg19 1 27720330 27720350 + In_Frame_Del DEL GCCTGGCTCTCAGCTGGCTCA GCCTGGCTCTCAGCTGGCTCA - novel TCGA-J7-6720-01A-11D-2136-08 TCGA-J7-6720-10A-01D-2136-08 GCCTGGCTCTCAGCTGGCTCA GCCTGGCTCTCAGCTGGCTCA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1 ee153c70-16dc-47aa-b326-e5341dc09b2f . GPR3 NM_005281 exon2 c.27_47del p.9_16del . . 213.0 24.0 232.0 0.0 . 23 . 0.112676 0 none . . PASS Atlas-INDEL FGD4 121512 hgsc.bcm.edu hg19 12 32777967 32777968 + In_Frame_Ins INS - - TTTTTT novel TCGA-J7-6720-01A-11D-2136-08 TCGA-J7-6720-10A-01D-2136-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1 ee153c70-16dc-47aa-b326-e5341dc09b2f . FGD4 NM_139241 exon13 c.1600_1601insTTTTTT p.I534delinsIFF . . 186.0 19.0 194.0 0.0 . 86 . 0.102151 0 none . . PASS Atlas-INDEL TTLL12 23170 hgsc.bcm.edu hg19 22 43579135 43579149 + In_Frame_Del DEL CACTTCCCCAGCGTC CACTTCCCCAGCGTC - novel TCGA-J7-6720-01A-11D-2136-08 TCGA-J7-6720-10A-01D-2136-08 CACTTCCCCAGCGTC CACTTCCCCAGCGTC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1 ee153c70-16dc-47aa-b326-e5341dc09b2f . TTLL12 NM_015140 exon2 c.185_199del p.62_67del . . 195.0 16.0 192.0 0.0 . 50 . 0.0820513 0 none . . PASS Atlas-INDEL KIAA1199 57214 hgsc.bcm.edu hg19 15 81221510 81221511 + Frame_Shift_Del DEL AG AG - novel TCGA-J7-6720-01A-11D-2136-08 TCGA-J7-6720-10A-01D-2136-08 AG AG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1 ee153c70-16dc-47aa-b326-e5341dc09b2f . KIAA1199 NM_018689 exon20 c.2606_2607del p.869_869del . . 141.0 54.0 97.0 0.0 . 118 . 0.382979 0 none . . PASS Atlas-INDEL