Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm CTTNBP2NL 55917 hgsc.bcm.edu hg19 1 112999075 112999075 + Missense_Mutation SNP A A G novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . CTTNBP2NL NM_018704 exon6 c.A961G p.R321G GCAGAAAGAACCC . 118.0 20.0 145.0 0.0 . 65 . . . none . . PASS Atlas-SNP ANKRD35 148741 hgsc.bcm.edu hg19 1 145561841 145561841 + Missense_Mutation SNP G G A rs201815402 by1000genomes;alternate_allele TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . ANKRD35 NM_144698 exon10 c.G1529A p.R510Q CTGCCCGGGGGGC . 96.0 11.0 115.0 0.0 . 96 . . . alt G|1.000;T|0.000 . PASS Atlas-SNP DENND4B 9909 hgsc.bcm.edu hg19 1 153907297 153907297 + Silent SNP C C T novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 DENND4B_ENST00000361217,NS,carcinoma,0,6 DENND4B NM_014856 exon18 c.G2712A p.Q904Q CTGCTGCTGCTGC . 38.0 12.0 39.0 0.0 . 210 . . . none . . PASS Atlas-SNP ILDR2 387597 hgsc.bcm.edu hg19 1 166890003 166890003 + Missense_Mutation SNP C C T novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . ILDR2 NM_199351 exon9 c.G1825A p.D609N GCAGGTCGCGGCC . 31.0 7.0 36.0 0.0 . 79 . . . none . . PASS Atlas-SNP TPR 7175 hgsc.bcm.edu hg19 1 186316562 186316562 + Silent SNP A A G novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . TPR NM_003292 exon22 c.T2805C p.D935D AAGATCATCCACA . 70.0 4.0 108.0 0.0 . 441 . . . none . . PASS Atlas-SNP ASPM 259266 hgsc.bcm.edu hg19 1 197072290 197072290 + Missense_Mutation SNP A A G novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . ASPM NM_018136 exon18 c.T6091C p.Y2031H CACGATAAGCTGA . 100.0 17.0 155.0 0.0 . 444 . . . none . . PASS Atlas-SNP IFT172 26160 hgsc.bcm.edu hg19 2 27702392 27702392 + Missense_Mutation SNP T T A novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . IFT172 NM_015662 exon10 c.A989T p.Y330F CCCACATACGTCA . 97.0 12.0 71.0 0.0 . 119 . . . none . . PASS Atlas-SNP TCF7L1 83439 hgsc.bcm.edu hg19 2 85361150 85361150 + Silent SNP C C G novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . TCF7L1 NM_031283 exon2 c.C261G p.R87R GAGGCGCCCGCAG . 117.0 19.0 90.0 0.0 . 44 . . . none . . PASS Atlas-SNP RNF103 7844 hgsc.bcm.edu hg19 2 86832185 86832185 + Missense_Mutation SNP A A G novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . RNF103 NM_005667 exon4 c.T839C p.I280T ATGCCAATATCTG . 133.0 8.0 133.0 0.0 . 58 . . . none . . PASS Atlas-SNP MALL 7851 hgsc.bcm.edu hg19 2 110873286 110873286 + Silent SNP G G A novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . MALL NM_005434 exon1 c.C84T p.F28F GAAGGCGAAAGGG . 178.0 22.0 133.0 0.0 . 14 . . . none . . PASS Atlas-SNP SLC20A1 6574 hgsc.bcm.edu hg19 2 113418053 113418053 + Missense_Mutation SNP T T C novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . SLC20A1 NM_005415 exon9 c.T1697C p.L566P TTCTACTCTATGG . 176.0 29.0 211.0 0.0 . 59 . . . none . . PASS Atlas-SNP INHBB 3625 hgsc.bcm.edu hg19 2 121106693 121106693 + Missense_Mutation SNP G G A novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 INHBB,NS,adenocarcinoma,0,2 INHBB NM_002193 exon2 c.G467A p.R156Q CCTCCCGGGTCCG . 96.0 5.0 133.0 0.0 . 29 . . . none . . PASS Atlas-SNP EEF1B2 1933 hgsc.bcm.edu hg19 2 207027278 207027278 + Missense_Mutation SNP A A T novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . EEF1B2 NM_021121 exon6 c.A463T p.M155L ACAGATATGGCGA . 209.0 28.0 206.0 0.0 . 58 . . . none . . PASS Atlas-SNP RAB17 64284 hgsc.bcm.edu hg19 2 238494741 238494741 + Silent SNP C C A novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . RAB17 NM_022449 exon2 c.G57T p.V19V CTTGAACACACGG . 120.0 18.0 116.0 0.0 . 17 . . . none . . PASS Atlas-SNP SLC6A6 6533 hgsc.bcm.edu hg19 3 14508107 14508107 + Silent SNP A A G novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . SLC6A6 NM_003043 exon7 c.A816G p.A272A GGGCGCAGGCATC . 64.0 9.0 60.0 0.0 . 58 . . . none . . PASS Atlas-SNP TMEM115 11070 hgsc.bcm.edu hg19 3 50396218 50396218 + Missense_Mutation SNP A A G novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . TMEM115 NM_007024 exon1 c.T277C p.W93R CCCCCCAGAGGGG . 86.0 12.0 89.0 0.0 . 20 . . . none . . PASS Atlas-SNP P2RY1 5028 hgsc.bcm.edu hg19 3 152554007 152554007 + Missense_Mutation SNP A A G novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . P2RY1 NM_002563 exon1 c.A436G p.S146G TGCATCAGTGCCC . 90.0 5.0 82.0 0.0 . 49 . . . none . . PASS Atlas-SNP FGFR3 2261 hgsc.bcm.edu hg19 4 1807653 1807653 + Missense_Mutation SNP T T A novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . FGFR3 NM_001163213 exon13 c.T1828A p.L610M GAGTACTTGGCCT . 55.0 17.0 57.0 0.0 . 3320 . . . none . . PASS Atlas-SNP SLC4A4 8671 hgsc.bcm.edu hg19 4 72413388 72413388 + Missense_Mutation SNP T T C novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . SLC4A4 NM_001098484 exon20 c.T2645C p.L882P GAACCCTTGTGTT . 82.0 7.0 109.0 0.0 . 269 . . . none . . PASS Atlas-SNP ISL1 3670 hgsc.bcm.edu hg19 5 50680410 50680410 + Missense_Mutation SNP A A G novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . ISL1 NM_002202 exon2 c.A64G p.N22D TGCGGCAATCAGA . 173.0 47.0 189.0 0.0 . 65 . . . none . . PASS Atlas-SNP SEC24A 10802 hgsc.bcm.edu hg19 5 134060676 134060676 + Missense_Mutation SNP G G C novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . SEC24A NM_021982 exon23 c.G3174C p.E1058D GGATGAGAGTCCA . 404.0 43.0 409.0 0.0 . 77 . . . none . . PASS Atlas-SNP HNRNPA0 10949 hgsc.bcm.edu hg19 5 137088931 137088931 + Silent SNP G G A novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 HNRNPA0,colon,carcinoma,0,1 HNRNPA0 NM_006805 exon1 c.C825T p.G275G TCCACCGCCGCCG . 85.0 7.0 70.0 1.0 . 17 . . . none . . PASS Atlas-SNP CREBRF 153222 hgsc.bcm.edu hg19 5 172518246 172518246 + Missense_Mutation SNP A A T novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . . NM_153607 exon4 c.A1064T p.E355V GTCCTGAAGAAGA . 169.0 32.0 190.0 0.0 . . . . . none . . PASS Atlas-SNP HIVEP2 3097 hgsc.bcm.edu hg19 6 143090738 143090738 + Missense_Mutation SNP G G T novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . HIVEP2 NM_006734 exon5 c.C5138A p.P1713H GTTCCAGGCCTAT . 93.0 17.0 133.0 0.0 . 225 . . . none . . PASS Atlas-SNP EIF2AK1 27102 hgsc.bcm.edu hg19 7 6084205 6084205 + Missense_Mutation SNP T T G novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . EIF2AK1 NM_001134335 exon7 c.A718C p.I240L GCTGAATCACATG . 41.0 6.0 31.0 0.0 . 76 . . . none . . PASS Atlas-SNP CLCN1 1180 hgsc.bcm.edu hg19 7 143049049 143049049 + Silent SNP G G A novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . CLCN1 NM_000083 exon23 c.G2958A p.L986L TGAACTGATCCTT . 105.0 23.0 110.0 0.0 . 141 . . . none . . PASS Atlas-SNP CTSL1 1514 hgsc.bcm.edu hg19 9 90344596 90344596 + Missense_Mutation SNP C C T novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . CTSL1 NM_145918 exon6 c.C730T p.P244S GTGGGGCCCATTT . 81.0 16.0 108.0 0.0 . 43 . . . none . . PASS Atlas-SNP MASTL 84930 hgsc.bcm.edu hg19 10 27456144 27456144 + Missense_Mutation SNP T T A novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . MASTL NM_032844 exon7 c.T925A p.F309I CACACCTTCATAT . 86.0 4.0 96.0 0.0 . 81 . . . none . . PASS Atlas-SNP IFIT5 24138 hgsc.bcm.edu hg19 10 91177012 91177012 + Missense_Mutation SNP A A G novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . IFIT5 NM_012420 exon2 c.A56G p.H19R AATGTCATTTTAC . 125.0 16.0 148.0 0.0 . 32 . . . none . . PASS Atlas-SNP USH1C 10083 hgsc.bcm.edu hg19 11 17542471 17542471 + Missense_Mutation SNP A A C novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . USH1C NM_005709 exon14 c.T1156G p.L386V TAGGCAAGAGTAG . 87.0 9.0 134.0 0.0 . 157 . . . none . . PASS Atlas-SNP OR5M3 219482 hgsc.bcm.edu hg19 11 56237348 56237348 + Missense_Mutation SNP A A T novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . OR5M3 NM_001004742 exon1 c.T626A p.L209Q ACAGTCAGGGAAT . 173.0 20.0 206.0 0.0 . 103 . . . none . . PASS Atlas-SNP OR5M3 219482 hgsc.bcm.edu hg19 11 56237358 56237358 + Missense_Mutation SNP T T A novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . OR5M3 NM_001004742 exon1 c.A616T p.T206S AATATGTGAAGTT . 172.0 20.0 205.0 0.0 . 103 . . . none . . PASS Atlas-SNP SSRP1 6749 hgsc.bcm.edu hg19 11 57100282 57100282 + Silent SNP C C A novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . SSRP1 NM_003146 exon6 c.G585T p.T195T ATCTCCCGTGGCC . 72.0 15.0 98.0 0.0 . 75 . . . none . . PASS Atlas-SNP FRMD8 83786 hgsc.bcm.edu hg19 11 65168213 65168213 + Missense_Mutation SNP C C T novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . FRMD8 NM_031904 exon9 c.C946T p.R316C GGCCTGCGCTTCC . 82.0 13.0 76.0 0.0 . 28 . . . none . . PASS Atlas-SNP MUS81 80198 hgsc.bcm.edu hg19 11 65631192 65631192 + Missense_Mutation SNP G G A novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . MUS81 NM_025128 exon9 c.G961A p.A321T GACCCAGGTGAAG . 110.0 21.0 132.0 0.0 . 68 . . . none . . PASS Atlas-SNP INPPL1 3636 hgsc.bcm.edu hg19 11 71948603 71948603 + Silent SNP A A G novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . INPPL1 NM_001567 exon26 c.A3315G p.P1105P CTCACCAGCCAGC . 72.0 17.0 93.0 0.0 . 120 . . . none . . PASS Atlas-SNP C2CD3 26005 hgsc.bcm.edu hg19 11 73796809 73796809 + Missense_Mutation SNP C C G novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . C2CD3 NM_015531 exon21 c.G3764C p.C1255S AAAGAACAGGCCA . 132.0 19.0 140.0 0.0 . 288 . . . none . . PASS Atlas-SNP YAP1 10413 hgsc.bcm.edu hg19 11 102100555 102100555 + Nonsense_Mutation SNP G G T novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . YAP1 NM_001130145 exon9 c.G1399T p.G467X ATAGAAGGAGAGG . 94.0 15.0 128.0 0.0 . 45 . . . none . . PASS Atlas-SNP ARHGAP32 9743 hgsc.bcm.edu hg19 11 128933815 128933815 + Silent SNP A A G novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . ARHGAP32 NM_001142685 exon8 c.T825C p.P275P TTCGTCAGGGGCC . 139.0 24.0 158.0 0.0 . 307 . . . none . . PASS Atlas-SNP CLSTN3 9746 hgsc.bcm.edu hg19 12 7302198 7302198 + Silent SNP T T C novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . CLSTN3 NM_014718 exon14 c.T2154C p.D718D CCTGGATCCCGAG . 67.0 21.0 110.0 0.0 . 84 . . . none . . PASS Atlas-SNP MON2 23041 hgsc.bcm.edu hg19 12 62954577 62954577 + Missense_Mutation SNP T T A novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . MON2 NM_015026 exon26 c.T3716A p.L1239Q TGAATCTATGGTG . 99.0 22.0 116.0 0.0 . 160 . . . none . . PASS Atlas-SNP MRPS31 10240 hgsc.bcm.edu hg19 13 41323388 41323388 + Missense_Mutation SNP A A T novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . MRPS31 NM_005830 exon6 c.T844A p.F282I TAGCAAATTCCAC . 88.0 8.0 122.0 0.0 . 30 . . . none . . PASS Atlas-SNP COL4A2 1284 hgsc.bcm.edu hg19 13 111117912 111117912 + Missense_Mutation SNP T T A novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . COL4A2 NM_001846 exon25 c.T1937A p.F646Y CAGGCTTCCTGGG . 124.0 14.0 158.0 0.0 . 178 . . . none . . PASS Atlas-SNP GTF2A1 2957 hgsc.bcm.edu hg19 14 81659105 81659105 + Missense_Mutation SNP T T A novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . GTF2A1 NM_015859 exon7 c.A691T p.N231Y TCTTATTTCCTGT . 77.0 9.0 84.0 0.0 . 34 . . . none . . PASS Atlas-SNP SETD3 84193 hgsc.bcm.edu hg19 14 99929881 99929881 + Silent SNP C C T novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . SETD3 NM_032233 exon3 c.G138A p.E46E TTCCCACTCTTTT . 63.0 11.0 85.0 0.0 . 56 . . . none . . PASS Atlas-SNP FAN1 22909 hgsc.bcm.edu hg19 15 31197838 31197838 + Missense_Mutation SNP T T G novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . FAN1 NM_001146095 exon2 c.T972G p.H324Q ATCTCATAGTTCT . 86.0 16.0 97.0 0.0 . 77 . . . none . . PASS Atlas-SNP SIN3A 25942 hgsc.bcm.edu hg19 15 75705130 75705130 + Nonsense_Mutation SNP G G A novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . SIN3A NM_001145358 exon5 c.C730T p.Q244X GGGGCTGAGGAGC . 89.0 12.0 131.0 0.0 . 152 . . . none . . PASS Atlas-SNP RASGRF1 5923 hgsc.bcm.edu hg19 15 79350728 79350728 + Missense_Mutation SNP A A T novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . RASGRF1 NM_001145648 exon3 c.T479A p.L160H TGCCGAAGCTGCT . 44.0 4.0 46.0 0.0 . 168 . . . none . . PASS Atlas-SNP GRIN2A 2903 hgsc.bcm.edu hg19 16 9858489 9858489 + Missense_Mutation SNP T T C novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . GRIN2A NM_000833 exon14 c.A2912G p.Q971R TCCTTCTGCCGGT . 84.0 27.0 96.0 0.0 . 366 . . . none . . PASS Atlas-SNP ITGAX 3687 hgsc.bcm.edu hg19 16 31373395 31373395 + Splice_Site SNP G G A novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . ITGAX NM_000887 exon11 c.1087-1G>A . CTCCCAGGATGGC . 74.0 10.0 94.0 0.0 . 198 . . . none . . PASS Atlas-SNP ITGAX 3687 hgsc.bcm.edu hg19 16 31383064 31383064 + Missense_Mutation SNP G G A rs368436373 TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . ITGAX NM_000887 exon17 c.G2119A p.G707R GTCCTCGGGCTGA . 54.0 5.0 59.0 0.0 . 198 . . . weak . . PASS Atlas-SNP COL1A1 1277 hgsc.bcm.edu hg19 17 48277127 48277127 + Silent SNP G G A novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . COL1A1 NM_000088 exon2 c.C285T p.C95C GTCGGGGCAGACG . 59.0 6.0 34.0 0.0 . 158 . . . none . . PASS Atlas-SNP SRSF1 6426 hgsc.bcm.edu hg19 17 56083837 56083837 + Nonsense_Mutation SNP G G T novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 SRSF1,NS,lymphoid_neoplasm,0,2 SRSF1 NM_006924 exon2 c.C246A p.Y82X CAGACGGTACCCA . 206.0 20.0 223.0 0.0 . 41 . . . none . . PASS Atlas-SNP NETO1 81832 hgsc.bcm.edu hg19 18 70450990 70450990 + Missense_Mutation SNP A A T novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . NETO1 NM_001201465 exon7 c.T791A p.L264H ACCCCAAGACCCG . 88.0 7.0 74.0 0.0 . 178 . . . none . . PASS Atlas-SNP DOT1L 84444 hgsc.bcm.edu hg19 19 2226194 2226194 + Missense_Mutation SNP C C T novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . DOT1L NM_032482 exon27 c.C3674T p.A1225V GCTTGGCGGGAAG . 68.0 12.0 63.0 0.0 . 205 . . . none . . PASS Atlas-SNP RYR1 6261 hgsc.bcm.edu hg19 19 38948847 38948847 + Nonsense_Mutation SNP C C G novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . RYR1 NM_001042723 exon18 c.C2082G p.Y694X CCCCTACCCTGGG . 46.0 8.0 55.0 0.0 . 708 . . . none . . PASS Atlas-SNP PSG5 5673 hgsc.bcm.edu hg19 19 43679366 43679366 + Splice_Site SNP C C T novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . PSG5 NM_002781 exon5 c.964+1G>A . CACTTACCAGAGA . 114.0 12.0 153.0 0.0 . 58 . . . none . . PASS Atlas-SNP NLRP8 126205 hgsc.bcm.edu hg19 19 56487643 56487643 + Silent SNP C C T novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . NLRP8 NM_176811 exon8 c.C2850T p.N950N GAAGAACCCTGAC . 151.0 22.0 188.0 0.0 . 225 . . . none . . PASS Atlas-SNP ACTR5 79913 hgsc.bcm.edu hg19 20 37383625 37383625 + Silent SNP T T C novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . ACTR5 NM_024855 exon4 c.T801C p.D267D TCCTGATTATTAT . 256.0 56.0 245.0 0.0 . 44 . . . none . . PASS Atlas-SNP PREX1 57580 hgsc.bcm.edu hg19 20 47361658 47361658 + Silent SNP G G A novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . PREX1 NM_020820 exon3 c.C318T p.I106I TTCCAGGATGTCT . 79.0 22.0 130.0 0.0 . 441 . . . none . . PASS Atlas-SNP GSTT1 2952 hgsc.bcm.edu hg19 22 24384206 24384206 + Missense_Mutation SNP A A T novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . GSTT1 NM_000853 exon1 c.T26A p.L9Q GACAGCAGGTCCA . 84.0 22.0 86.0 0.0 . 14 . . . none . . PASS Atlas-SNP ND5 0 hgsc.bcm.edu hg19 MT 13095 13095 + Silent SNP T T C novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . . ENST00000361567 exon1 c.T759C p.V253V TATAGTTGTAGCA . 11.0 6.0 5.0 0.0 . . . . . none . . PASS Atlas-SNP CYTB 0 hgsc.bcm.edu hg19 MT 15614 15614 + Missense_Mutation SNP G G A novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . . ENST00000361789 exon1 c.G868A p.G290S CTAGGAGGCGTCC . 15.0 8.0 9.0 0.0 . . . . . none . . PASS Atlas-SNP ANKRD44 91526 hgsc.bcm.edu hg19 2 197878244 197878244 + Frame_Shift_Del DEL G G - novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . ANKRD44 NM_001195144 exon18 c.1916delA p.H639fs . . 134.0 31.0 141.0 0.0 . 281 . 0.231343 0 none . . PASS Atlas-Indel,Pindel SESN1 27244 hgsc.bcm.edu hg19 6 109309823 109309823 + Frame_Shift_Del DEL T T - novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . SESN1 NM_014454 exon9 c.1493delC p.T498fs . . 56.0 13.0 51.0 0.0 . 29 . 0.232143 0 none . . PASS Atlas-Indel,Pindel TRPM3 80036 hgsc.bcm.edu hg19 9 73151135 73151136 + Frame_Shift_Ins INS - - T novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . TRPM3 NM_001007471 exon25 c.4858_4859insA p.E1620fs . . 129.0 15.0 148.0 0.0 . 700 . 0.116279 0 none . . PASS Atlas-Indel,Pindel SYVN1 84447 hgsc.bcm.edu hg19 11 64900251 64900251 + Frame_Shift_Del DEL T T - novel TCGA-KV-A6GD-01A-11D-A31X-10 TCGA-KV-A6GD-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 971ca777-b810-45b5-bcca-7100b2935d0f 92ae44d5-c386-489b-b4aa-c3e169713c55 . SYVN1 NM_032431 exon5 c.380delT p.M127fs . . 49.0 11.0 76.0 0.0 . 55 . 0.22449 0 none . . PASS Atlas-INDEL