Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm UBR4 23352 hgsc.bcm.edu hg19 1 19482811 19482811 + Missense_Mutation SNP G G A novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . UBR4 NM_020765 exon42 c.C6026T p.P2009L GAACCAGGTAACC . 418.0 155.0 474.0 1.0 . 415 . . . none . . PASS Atlas-SNP STK40 83931 hgsc.bcm.edu hg19 1 36820910 36820910 + Missense_Mutation SNP A A T novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . STK40 NM_032017 exon6 c.T467A p.L156H TTGATGAGGTCAG . 187.0 66.0 215.0 0.0 . 53 . . . none . . PASS Atlas-SNP CELSR2 1952 hgsc.bcm.edu hg19 1 109807154 109807154 + Missense_Mutation SNP G G A novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . CELSR2 NM_001408 exon11 c.G5368A p.G1790S GAGCAAGGCTGTA . 126.0 50.0 135.0 0.0 . 228 . . . none . . PASS Atlas-SNP ADAMTSL4 54507 hgsc.bcm.edu hg19 1 150531493 150531493 + Missense_Mutation SNP G G T novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . ADAMTSL4 NM_019032 exon16 c.G2615T p.S872I TTGGGAGTGGGGC . 29.0 19.0 21.0 0.0 . 101 . . . none . . PASS Atlas-SNP ELK4 2005 hgsc.bcm.edu hg19 1 205588957 205588957 + Missense_Mutation SNP C C G novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . ELK4 NM_021795 exon3 c.G1217C p.X406S AACTTTCACATGA . 75.0 27.0 58.0 0.0 . 45 . . . none . . PASS Atlas-SNP OR13G1 441933 hgsc.bcm.edu hg19 1 247836182 247836182 + Silent SNP C C A novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 OR13G1,NS,carcinoma,-1,4 OR13G1 NM_001005487 exon1 c.G162T p.T54T CATGGGCGTATGC . 157.0 52.0 129.0 0.0 . 78 . . . none . . PASS Atlas-SNP GEN1 348654 hgsc.bcm.edu hg19 2 17962535 17962535 + Missense_Mutation SNP C C G novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . GEN1 NM_182625 exon14 c.C2056G p.Q686E TATCCTCAGGATA . 108.0 54.0 32.0 0.0 . 79 . . . none . . PASS Atlas-SNP ITSN2 50618 hgsc.bcm.edu hg19 2 24469667 24469667 + Silent SNP A A G novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . ITSN2 NM_147152 exon28 c.T3384C p.P1128P CATACCAGGATGA . 71.0 35.0 28.0 0.0 . 224 . . . none . . PASS Atlas-SNP NRBP1 29959 hgsc.bcm.edu hg19 2 27660178 27660178 + Missense_Mutation SNP A A T novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . NRBP1 NM_013392 exon10 c.A854T p.Q285L TGCCACAGGAAGC . 415.0 233.0 381.0 2.0 . 40 . . . none . . PASS Atlas-SNP RFX8 731220 hgsc.bcm.edu hg19 2 102014128 102014128 + Missense_Mutation SNP G G T novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 RFX8,NS,carcinoma,0,1 RFX8 NM_001145664 exon12 c.C1304A p.P435H CCCATAGGAAGGC . 176.0 50.0 138.0 0.0 . 16 . . . none . . PASS Atlas-SNP NPHP1 4867 hgsc.bcm.edu hg19 2 110922202 110922202 + Missense_Mutation SNP A A T novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . NPHP1 NM_207181 exon8 c.T834A p.N278K CATCCTATTTCGC . 130.0 38.0 88.0 0.0 . 68 . . . none . . PASS Atlas-SNP CLASP1 23332 hgsc.bcm.edu hg19 2 122161975 122161975 + Missense_Mutation SNP G G C novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . CLASP1 NM_015282 exon26 c.C2705G p.T902S ATCCGAGTGAAGA . 160.0 44.0 154.0 0.0 . 135 . . . none . . PASS Atlas-SNP KIF1A 547 hgsc.bcm.edu hg19 2 241725900 241725900 + Missense_Mutation SNP C C T novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . KIF1A NM_001244008 exon6 c.G460A p.V154I CACGGACGCGCTC . 238.0 22.0 203.0 0.0 . 152 . . . none . . PASS Atlas-SNP FYCO1 79443 hgsc.bcm.edu hg19 3 46009857 46009857 + Missense_Mutation SNP C C A rs372875711 alternate_allele TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . FYCO1 NM_024513 exon8 c.G969T p.E323D TCCTAGCTCCAGG . 47.0 11.0 79.0 0.0 . 115 . . . alt . . PASS Atlas-SNP RBM5 10181 hgsc.bcm.edu hg19 3 50155814 50155814 + Nonsense_Mutation SNP T T A novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . RBM5 NM_005778 exon25 c.T2373A p.Y791X CGCATATGGTTTG . 150.0 63.0 172.0 0.0 . 76 . . . none . . PASS Atlas-SNP WDR52 55779 hgsc.bcm.edu hg19 3 113120585 113120585 + Missense_Mutation SNP A A C novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . WDR52 NM_001164496 exon10 c.T1172G p.I391R TCCCATATCTTGT . 81.0 36.0 38.0 0.0 . 151 . . . none . . PASS Atlas-SNP MYNN 55892 hgsc.bcm.edu hg19 3 169496621 169496621 + Missense_Mutation SNP G G A novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . MYNN NM_001185118 exon4 c.G332A p.C111Y CTAAATGCAAAAT . 81.0 32.0 75.0 0.0 . 36 . . . none . . PASS Atlas-SNP KNG1 3827 hgsc.bcm.edu hg19 3 186435425 186435425 + Missense_Mutation SNP G G T novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . KNG1 NM_000893 exon1 c.G94T p.D32Y GACAAGGATTTAT . 157.0 37.0 129.0 0.0 . 129 . . . none . . PASS Atlas-SNP TBC1D19 55296 hgsc.bcm.edu hg19 4 26585819 26585819 + Silent SNP T T C novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . TBC1D19 NM_018317 exon1 c.T4C p.L2L GAAATGTTGCAGG . 70.0 29.0 54.0 0.0 . 53 . . . none . . PASS Atlas-SNP GRSF1 2926 hgsc.bcm.edu hg19 4 71702003 71702003 + Missense_Mutation SNP A A G novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . GRSF1 NM_002092 exon2 c.T386C p.L129P GGTGGAAGGTCTT . 154.0 46.0 141.0 0.0 . 35 . . . none . . PASS Atlas-SNP TBC1D9 23158 hgsc.bcm.edu hg19 4 141600812 141600812 + Silent SNP G G A novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . TBC1D9 NM_015130 exon4 c.C546T p.S182S GTTAATGCTGAGG . 82.0 30.0 61.0 0.0 . 198 . . . none . . PASS Atlas-SNP AHRR 57491 hgsc.bcm.edu hg19 5 434928 434928 + Silent SNP G G A rs368088592 TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . AHRR NM_020731 exon12 c.G2139A p.S713S AGCTTCGGGGTGC . 126.0 6.0 121.0 0.0 . 67 . . . weak . . PASS Atlas-SNP EGFLAM 133584 hgsc.bcm.edu hg19 5 38418272 38418272 + Silent SNP C C A novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . EGFLAM NM_001205301 exon12 c.C1599A p.G533G TCAAGGCTGTGTG . 120.0 35.0 153.0 0.0 . 302 . . . none . . PASS Atlas-SNP GPR98 84059 hgsc.bcm.edu hg19 5 89979468 89979468 + Silent SNP T T C novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . GPR98 NM_032119 exon28 c.T5730C p.D1910D TCCTGATGGTGAT . 108.0 38.0 97.0 0.0 . 605 . . . none . . PASS Atlas-SNP STK10 6793 hgsc.bcm.edu hg19 5 171471934 171471934 + Silent SNP T T G novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . STK10 NM_005990 exon19 c.A2859C p.P953P CTTGCTTGGGGTG . 98.0 5.0 95.0 0.0 . 100 . . . none . . PASS Atlas-SNP TNXB 7148 hgsc.bcm.edu hg19 6 32038155 32038155 + Missense_Mutation SNP C C T novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . TNXB NM_019105 exon14 c.G5027A p.R1676H CCAAGGCGGGGTG . 82.0 27.0 49.0 0.0 . 553 . . . none . . PASS Atlas-SNP PKHD1 5314 hgsc.bcm.edu hg19 6 51768400 51768400 + Missense_Mutation SNP T T G novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . PKHD1 NM_170724 exon43 c.A6991C p.I2331L CCTCTATAACATT . 118.0 41.0 97.0 0.0 . 927 . . . none . . PASS Atlas-SNP BBS9 27241 hgsc.bcm.edu hg19 7 33380559 33380559 + Missense_Mutation SNP G G C novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . BBS9 NM_014451 exon11 c.G1249C p.V417L GTCGTGGTTTCTC . 94.0 34.0 19.0 0.0 . 194 . . . none . . PASS Atlas-SNP GBAS 2631 hgsc.bcm.edu hg19 7 56046042 56046042 + Splice_Site SNP G G C novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . GBAS NM_001483 exon3 c.233-1G>C . GTTTCAGTTCACA . 213.0 89.0 102.0 0.0 . 16 . . . none . . PASS Atlas-SNP GOLGA2 2801 hgsc.bcm.edu hg19 9 131021446 131021446 + Silent SNP C C T novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . GOLGA2 NM_004486 exon19 c.G2016A p.Q672Q CCTCACCTGGGTT . 61.0 22.0 73.0 0.0 . 69 . . . none . . PASS Atlas-SNP NRG3 10718 hgsc.bcm.edu hg19 10 83635808 83635808 + Missense_Mutation SNP T T C novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . NRG3 NM_001165972 exon1 c.T712C p.S238P CACGATTCTACTC . 150.0 62.0 125.0 0.0 . 301 . . . none . . PASS Atlas-SNP CYP2C8 1558 hgsc.bcm.edu hg19 10 96818110 96818110 + Missense_Mutation SNP G G C novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 CYP2C8,NS,carcinoma,0,1 CYP2C8 NM_000770 exon5 c.C801G p.F267L GATCAGGAAGCAA . 121.0 48.0 68.0 0.0 . 73 . . . none . . PASS Atlas-SNP SORBS1 10580 hgsc.bcm.edu hg19 10 97096528 97096528 + Missense_Mutation SNP T T G novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . SORBS1 NM_001034954 exon28 c.A3389C p.K1130T TCTGCTTTCCTCT . 116.0 50.0 93.0 0.0 . 185 . . . none . . PASS Atlas-SNP MARK2 2011 hgsc.bcm.edu hg19 11 63671476 63671476 + Silent SNP C C G novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . MARK2 NM_001039469 exon15 c.C1533G p.S511S AGGGTCCCGGGCC . 38.0 13.0 24.0 0.0 . 91 . . . none . . PASS Atlas-SNP DPF2 5977 hgsc.bcm.edu hg19 11 65107956 65107956 + Missense_Mutation SNP C C G novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . DPF2 NM_006268 exon2 c.C133G p.Q45E GACTCACAGACCG . 137.0 53.0 165.0 0.0 . 54 . . . none . . PASS Atlas-SNP FAT3 120114 hgsc.bcm.edu hg19 11 92599961 92599961 + Missense_Mutation SNP T T A novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . FAT3 NM_001008781 exon21 c.T11713A p.L3905M GGAATCTTGGGCA . 102.0 43.0 88.0 0.0 . 1822 . . . none . . PASS Atlas-SNP CCDC15 80071 hgsc.bcm.edu hg19 11 124847425 124847425 + Missense_Mutation SNP G G C novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . CCDC15 NM_025004 exon6 c.G682C p.G228R ATAAGAGGAGAGT . 57.0 19.0 24.0 0.0 . 134 . . . none . . PASS Atlas-SNP STT3A 3703 hgsc.bcm.edu hg19 11 125478106 125478106 + Missense_Mutation SNP T T G novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . STT3A NM_152713 exon9 c.T883G p.F295V CAACAATTTGAAG . 96.0 43.0 105.0 0.0 . 52 . . . none . . PASS Atlas-SNP IQSEC3 440073 hgsc.bcm.edu hg19 12 275007 275007 + Silent SNP G G A novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . IQSEC3 NM_001170738 exon11 c.G2922A p.L974L GGACCTGAAGGAG . 195.0 100.0 143.0 0.0 . 154 . . . none . . PASS Atlas-SNP SCAF11 9169 hgsc.bcm.edu hg19 12 46342224 46342224 + Missense_Mutation SNP T T C novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . SCAF11 NM_004719 exon5 c.A394G p.I132V ACCTTATACAGCT . 25.0 13.0 25.0 0.0 . 145 . . . none . . PASS Atlas-SNP MTERFD3 80298 hgsc.bcm.edu hg19 12 107371368 107371368 + Missense_Mutation SNP A A C novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . MTERFD3 NM_001033050 exon3 c.T1125G p.F375L AGGGTTAAATAAT . 124.0 68.0 54.0 0.0 . 32 . . . none . . PASS Atlas-SNP MMP17 4326 hgsc.bcm.edu hg19 12 132334421 132334421 + Missense_Mutation SNP C C T novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . MMP17 NM_016155 exon9 c.C1279T p.P427S AGCCTCCCGCCTG . 270.0 85.0 217.0 0.0 . 77 . . . none . . PASS Atlas-SNP STK24 8428 hgsc.bcm.edu hg19 13 99127511 99127511 + Missense_Mutation SNP G G T novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . STK24 NM_003576 exon4 c.C468A p.D156E TTTAATGTCTCTG . 123.0 25.0 119.0 0.0 . 40 . . . none . . PASS Atlas-SNP CIDEB 27141 hgsc.bcm.edu hg19 14 24775587 24775587 + Missense_Mutation SNP G G C novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . CIDEB NM_014430 exon5 c.C329G p.P110R CTTGTAGGGCTCC . 150.0 51.0 139.0 0.0 . 17 . . . none . . PASS Atlas-SNP ACTR10 55860 hgsc.bcm.edu hg19 14 58680398 58680398 + Missense_Mutation SNP G G C novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . ACTR10 NM_018477 exon6 c.G500C p.G167A CCCTAGGAGGAAA . 27.0 16.0 34.0 0.0 . 33 . . . none . . PASS Atlas-SNP SPTLC2 9517 hgsc.bcm.edu hg19 14 78036838 78036838 + Missense_Mutation SNP C C A novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . SPTLC2 NM_004863 exon5 c.G645T p.K215N TTCATGCTTGTCC . 75.0 34.0 64.0 0.0 . 55 . . . none . . PASS Atlas-SNP C14orf159 80017 hgsc.bcm.edu hg19 14 91681816 91681816 + Silent SNP C C T novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . C14orf159 NM_001102368 exon13 c.C1632T p.H544H TGTCCACAGTCAG . 95.0 39.0 117.0 0.0 . 57 . . . none . . PASS Atlas-SNP FAM63B 54629 hgsc.bcm.edu hg19 15 59139573 59139573 + Silent SNP A A T novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . FAM63B NM_001040450 exon7 c.A1446T p.V482V CAACGTAGATGGT . 48.0 17.0 37.0 0.0 . 33 . . . none . . PASS Atlas-SNP ACAN 176 hgsc.bcm.edu hg19 15 89400337 89400337 + Missense_Mutation SNP T T A novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . ACAN NM_001135 exon12 c.T4521A p.S1507R TGTCAGTGAACTT . 50.0 13.0 39.0 0.0 . 220 . . . none . . PASS Atlas-SNP RBBP6 5930 hgsc.bcm.edu hg19 16 24581079 24581079 + Missense_Mutation SNP A A T novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . RBBP6 NM_006910 exon17 c.A3068T p.N1023I GGAAGAATGATGG . 80.0 28.0 37.0 0.0 . 158 . . . none . . PASS Atlas-SNP ARHGEF15 22899 hgsc.bcm.edu hg19 17 8215790 8215790 + Missense_Mutation SNP T T G novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . ARHGEF15 NM_025014 exon2 c.T433G p.S145A TCTGCCTCAGCTC . 74.0 35.0 54.0 0.0 . 97 . . . none . . PASS Atlas-SNP FBXO47 494188 hgsc.bcm.edu hg19 17 37099134 37099134 + Missense_Mutation SNP A A G novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . FBXO47 NM_001008777 exon9 c.T980C p.L327P ATTAGGAGACGTG . 101.0 34.0 86.0 0.0 . 34 . . . none . . PASS Atlas-SNP AMZ2 51321 hgsc.bcm.edu hg19 17 66246341 66246341 + Missense_Mutation SNP C C T novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . AMZ2 NM_001033574 exon2 c.C13T p.R5W ATAATACGGCACT . 59.0 5.0 30.0 0.0 . 15 . . . none . . PASS Atlas-SNP C17orf70 80233 hgsc.bcm.edu hg19 17 79518169 79518169 + Silent SNP A A G novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . C17orf70 NM_025161 exon3 c.T351C p.P117P GTCCACAGGGATC . 559.0 133.0 446.0 1.0 . 79 . . . none . . PASS Atlas-SNP DLGAP1 9229 hgsc.bcm.edu hg19 18 3508641 3508641 + Missense_Mutation SNP G G A novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . DLGAP1 NM_001242761 exon11 c.C2498T p.T833I ACTGCGGTTCGGA . 70.0 24.0 66.0 0.0 . 201 . . . none . . PASS Atlas-SNP DSG2 1829 hgsc.bcm.edu hg19 18 29116286 29116286 + Silent SNP T T C novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . DSG2 NM_001943 exon11 c.T1545C p.V515V GAATGTTACTGCA . 109.0 35.0 118.0 0.0 . 115 . . . none . . PASS Atlas-SNP RDH13 112724 hgsc.bcm.edu hg19 19 55570627 55570627 + Missense_Mutation SNP C C A novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . RDH13 NM_001145971 exon2 c.G82T p.G28W AAGCCCCACCGGT . 87.0 37.0 69.0 0.0 . 43 . . . none . . PASS Atlas-SNP NCOA3 8202 hgsc.bcm.edu hg19 20 46254225 46254225 + Silent SNP G G A novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . NCOA3 NM_181659 exon5 c.G357A p.Q119Q ACTTCAGGCAAGT . 42.0 15.0 18.0 0.0 . 156 . . . none . . PASS Atlas-SNP ADNP 23394 hgsc.bcm.edu hg19 20 49509272 49509272 + Missense_Mutation SNP A A G novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . ADNP NM_015339 exon5 c.T1979C p.L660P TAGGTGAGCTTTT . 233.0 102.0 220.0 0.0 . 106 . . . none . . PASS Atlas-SNP LIPI 149998 hgsc.bcm.edu hg19 21 15561570 15561570 + Nonsense_Mutation SNP G G A novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . LIPI NM_198996 exon2 c.C280T p.Q94X TCTTTTGTGTGTT . 155.0 46.0 94.0 0.0 . 95 . . . none . . PASS Atlas-SNP HLCS 3141 hgsc.bcm.edu hg19 21 38309141 38309141 + Missense_Mutation SNP C C G rs148324626 TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . HLCS NM_000411 exon5 c.G604C p.E202Q TGTCCTCCAGCAG . 154.0 54.0 184.0 0.0 . 64 . . . weak C|1.000;G|0.000 0.000 PASS Atlas-SNP TSPEAR 54084 hgsc.bcm.edu hg19 21 45949793 45949793 + Silent SNP G G A novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . TSPEAR NM_144991 exon5 c.C678T p.T226T CCTTGGGGTGGCG . 28.0 12.0 23.0 0.0 . 110 . . . none . . PASS Atlas-SNP IL17RA 23765 hgsc.bcm.edu hg19 22 17566096 17566096 + Silent SNP C C A novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . IL17RA NM_014339 exon1 c.C115A p.R39R GACCACCGGGCGC . 8.0 8.0 1.0 0.0 . 62 . . . none . . PASS Atlas-SNP CSNK1E 1454 hgsc.bcm.edu hg19 22 38690131 38690131 + Missense_Mutation SNP C C T novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . CSNK1E NM_001894 exon9 c.G1202A p.R401Q GGGATCCGGGAGA . 53.0 14.0 51.0 0.0 . 143 . . . none . . PASS Atlas-SNP SHANK3 85358 hgsc.bcm.edu hg19 22 51160300 51160300 + Missense_Mutation SNP C C G novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . SHANK3 NM_033517 exon21 c.C3997G p.P1333A CCACCCCCTGCCC . 36.0 10.0 34.0 0.0 . 96 . . . none . . PASS Atlas-SNP WWC3 55841 hgsc.bcm.edu hg19 X 10066562 10066562 + Missense_Mutation SNP A A C novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . WWC3 NM_015691 exon8 c.A674C p.K225T ATGATAAAACAAG . 38.0 27.0 25.0 0.0 . 142 . . . none . . PASS Atlas-SNP NSD1 64324 hgsc.bcm.edu hg19 5 176709581 176709584 + In_Frame_Del DEL AAGT AAGT - novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 AAGT AAGT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . NSD1 NM_022455 exon19 c.6007_6009del p.2003_2003del . . 83.0 24.0 101.0 0.0 . 416 . 0.289157 0 none . . PASS Atlas-Indel,Pindel C2CD2L 9854 hgsc.bcm.edu hg19 11 118984691 118984704 + In_Frame_Del DEL TTTCCAAGGTAACA TTTCCAAGGTAACA - novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 TTTCCAAGGTAACA TTTCCAAGGTAACA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . C2CD2L NM_014807 exon12 c.1618_1626del p.540_542del . . 126.0 30.0 141.0 0.0 . 39 . 0.238095 0 none . . PASS Atlas-Indel,Pindel MARK3 4140 hgsc.bcm.edu hg19 14 103969341 103969341 + Frame_Shift_Del DEL G G - novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 MARK3,NS,carcinoma,0,1 MARK3 NM_001128918 exon18 c.2038delC p.R680fs . . 203.0 69.0 303.0 0.0 . 86 . 0.339901 0 none . . PASS Atlas-Indel,Pindel ZBTB2 57621 hgsc.bcm.edu hg19 6 151686673 151686676 + Frame_Shift_Del DEL TTTC TTTC - novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 TTTC TTTC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . ZBTB2 NM_020861 exon3 c.1526_1529del p.509_510del . . 127.0 39.0 137.0 0.0 . 30 . 0.307087 0 none . . PASS Atlas-Indel,Pindel LAMTOR2 28956 hgsc.bcm.edu hg19 1 156027791 156027791 + Frame_Shift_Del DEL G G - novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 LAMTOR2,colon,carcinoma,0,1 LAMTOR2 NM_014017 exon3 c.253delC p.R85fs . . 315.0 118.0 311.0 0.0 . 13 . 0.374603 0 none . . PASS Atlas-Indel,Pindel KCNK5 8645 hgsc.bcm.edu hg19 6 39159405 39159412 + Frame_Shift_Del DEL TTGTGGAC TTGTGGAC - novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 TTGTGGAC TTGTGGAC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . KCNK5 NM_003740 exon5 c.755_762del p.252_254del . . 95.0 20.0 169.0 0.0 . 57 . 0.210526 0 none . . PASS Atlas-Indel,Pindel GPR123 84435 hgsc.bcm.edu hg19 10 134912186 134912187 + Frame_Shift_Del DEL TT TT - novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 TT TT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . GPR123 NM_001083909 exon4 c.173_174del p.58_58del . . 55.0 18.0 45.0 0.0 . 118 . 0.327273 0 none . . PASS Atlas-Indel,Pindel RANBP2 5903 hgsc.bcm.edu hg19 2 109380179 109380179 + Frame_Shift_Del DEL A A - novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . RANBP2 NM_006267 exon20 c.3183delT p.S1061fs . . 110.0 53.0 88.0 0.0 . 488 . 0.481818 0 none . . PASS Atlas-Indel,Pindel TAF6 6878 hgsc.bcm.edu hg19 7 99711723 99711723 + Frame_Shift_Del DEL T T - novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 TAF6,NS,carcinoma,0,1 TAF6 NM_001190415 exon2 c.222delG p.Q74fs . . 421.0 177.0 276.0 0.0 . 55 . 0.420428 0 none . . PASS Atlas-Indel,Pindel IFT122 55764 hgsc.bcm.edu hg19 3 129214436 129214436 + Frame_Shift_Del DEL T T - novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . IFT122 NM_052985 exon19 c.2346delG p.M782fs . . 251.0 114.0 294.0 0.0 . 117 . 0.454183 0 none . . PASS Atlas-Indel,Pindel AKAP12 9590 hgsc.bcm.edu hg19 6 151671659 151671659 + Frame_Shift_Del DEL C C - novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . AKAP12 NM_005100 exon4 c.2132delA p.H711fs . . 142.0 50.0 155.0 0.0 . 170 . 0.352113 0 none . . PASS Atlas-Indel,Pindel SLC32A1 140679 hgsc.bcm.edu hg19 20 37353586 37353607 + Frame_Shift_Del DEL GGGCGCTGAAGCGCCCGTCGAG GGGCGCTGAAGCGCCCGTCGAG - novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 GGGCGCTGAAGCGCCCGTCGAG GGGCGCTGAAGCGCCCGTCGAG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . SLC32A1 NM_080552 exon1 c.218_239del p.73_80del . . 107.0 33.0 27.0 0.0 . 81 . 0.308411 0 none . . PASS Atlas-Indel,Pindel GCM1 8521 hgsc.bcm.edu hg19 6 52993368 52993369 + In_Frame_Ins INS - - AAA novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . GCM1 NM_003643 exon6 c.947_948insTTT p.Y316delinsFY . . 112.0 22.0 140.0 0.0 . 47 . 0.196 . none . . PASS Pindel