Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm RBP7 116362 hgsc.bcm.edu hg19 1 10068242 10068242 + Missense_Mutation SNP C C G novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . RBP7 NM_052960 exon3 c.C264G p.I88M GGTTATCTGGGAC . 148.0 15.0 194.0 0.0 . 11 . . . none . . PASS Atlas-SNP PRDM2 7799 hgsc.bcm.edu hg19 1 14108836 14108836 + Missense_Mutation SNP C C T novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . PRDM2 NM_015866 exon8 c.C4546T p.R1516W CGCAGACGGACAG . 107.0 39.0 121.0 0.0 . 147 . . . none . . PASS Atlas-SNP MST1L 11223 hgsc.bcm.edu hg19 1 17087368 17087368 + Missense_Mutation SNP C C A novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . . NM_001271733 exon3 c.G216T p.W72C GAACGCCCTGGAG . 276.0 28.0 303.0 0.0 . . . . . none . . PASS Atlas-SNP E2F2 1870 hgsc.bcm.edu hg19 1 23848337 23848337 + Missense_Mutation SNP G G C novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . E2F2 NM_004091 exon3 c.C570G p.I190M CCACTGGATGTTG . 118.0 45.0 156.0 0.0 . 31 . . . none . . PASS Atlas-SNP CD52 1043 hgsc.bcm.edu hg19 1 26646661 26646661 + Splice_Site SNP G G T novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . CD52 NM_001803 exon2 c.55-1G>T . CCTACAGATACAA . 42.0 6.0 52.0 0.0 . 7 . . . none . . PASS Atlas-SNP COL8A2 1296 hgsc.bcm.edu hg19 1 36564106 36564106 + Silent SNP A A G novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . COL8A2 NM_005202 exon2 c.T1176C p.I392I ACCTCGAATGCCA . 108.0 32.0 187.0 0.0 . 41 . . . none . . PASS Atlas-SNP CDC20 991 hgsc.bcm.edu hg19 1 43826814 43826814 + Missense_Mutation SNP G G C novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . CDC20 NM_001255 exon9 c.G1101C p.Q367H CTGGCAGTCCAAT . 82.0 32.0 118.0 0.0 . 34 . . . none . . PASS Atlas-SNP KLF17 128209 hgsc.bcm.edu hg19 1 44595144 44595144 + Missense_Mutation SNP G G T novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . KLF17 NM_173484 exon2 c.G201T p.M67I AGAGATGCTGGGG . 112.0 5.0 136.0 0.0 . 92 . . . none . . PASS Atlas-SNP GPBP1L1 60313 hgsc.bcm.edu hg19 1 46124748 46124748 + Silent SNP A A G novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . GPBP1L1 NM_021639 exon4 c.T12C p.H4H AAAATCATGCTGC . 89.0 13.0 97.0 0.0 . 43 . . . none . . PASS Atlas-SNP AGBL4 84871 hgsc.bcm.edu hg19 1 48999847 48999847 + Missense_Mutation SNP A A G novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . AGBL4 NM_032785 exon14 c.T1510C p.X504Q GTCTTTAAAAAGG . 156.0 20.0 179.0 0.0 . 54 . . . none . . PASS Atlas-SNP FNBP1L 54874 hgsc.bcm.edu hg19 1 93965136 93965136 + Missense_Mutation SNP T T A novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . FNBP1L NM_001164473 exon2 c.T136A p.L46M AAACAATTGAGGT . 97.0 44.0 91.0 0.0 . 56 . . . none . . PASS Atlas-SNP AQP10 89872 hgsc.bcm.edu hg19 1 154296801 154296801 + Missense_Mutation SNP G G T novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . AQP10 NM_080429 exon6 c.G751T p.V251L CCTCTGGTGGGGG . 33.0 16.0 41.0 0.0 . 44 . . . none . . PASS Atlas-SNP CENPL 91687 hgsc.bcm.edu hg19 1 173772300 173772300 + Missense_Mutation SNP G G T novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . CENPL NM_001127181 exon6 c.C902A p.A301E TGTATTGCGAAAG . 75.0 19.0 122.0 0.0 . 26 . . . none . . PASS Atlas-SNP RFWD2 64326 hgsc.bcm.edu hg19 1 175996826 175996826 + Splice_Site SNP T T C novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . RFWD2 NM_022457 exon16 c.1613-2A>G . CTTCACTAAGGGC . 78.0 31.0 72.0 0.0 . 67 . . . none . . PASS Atlas-SNP ETNK2 55224 hgsc.bcm.edu hg19 1 204101322 204101322 + Missense_Mutation SNP A A T novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . ETNK2 NM_018208 exon8 c.T1151A p.M384K TTTGGCATCTCCA . 101.0 34.0 165.0 0.0 . 48 . . . none . . PASS Atlas-SNP DIEXF 27042 hgsc.bcm.edu hg19 1 210006562 210006562 + Nonsense_Mutation SNP G G T novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . DIEXF NM_014388 exon4 c.G421T p.E141X GGAAAAGAAGATG . 51.0 17.0 59.0 0.0 . 97 . . . none . . PASS Atlas-SNP CENPF 1063 hgsc.bcm.edu hg19 1 214820696 214820696 + Missense_Mutation SNP A A T novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . CENPF NM_016343 exon13 c.A7783T p.N2595Y CTAGAGAATGAGC . 55.0 24.0 66.0 0.0 . 321 . . . none . . PASS Atlas-SNP FBXO11 80204 hgsc.bcm.edu hg19 2 48040950 48040950 + Missense_Mutation SNP C C T novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . FBXO11 NM_001190274 exon17 c.G2063A p.G688E AGAATTCCACCAT . 44.0 5.0 61.0 0.0 . 127 . . . none . . PASS Atlas-SNP AAK1 22848 hgsc.bcm.edu hg19 2 69757189 69757189 + Silent SNP G G A novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . AAK1 NM_014911 exon8 c.C822T p.F274F AATTGTGAAGTTT . 125.0 44.0 170.0 0.0 . 121 . . . none . . PASS Atlas-SNP RTKN 6242 hgsc.bcm.edu hg19 2 74668862 74668862 + Silent SNP G G T novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . RTKN NM_001015055 exon1 c.C82A p.R28R TGAGTCGGAAGCG . 38.0 12.0 65.0 0.0 . 80 . . . none . . PASS Atlas-SNP AUP1 550 hgsc.bcm.edu hg19 2 74755401 74755401 + Missense_Mutation SNP G G T novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . AUP1 NM_181575 exon6 c.C645A p.F215L AGGGACGAAAAGT . 60.0 24.0 70.0 0.0 . 29 . . . none . . PASS Atlas-SNP LRP2 4036 hgsc.bcm.edu hg19 2 170136009 170136009 + Nonsense_Mutation SNP T T A novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . LRP2 NM_004525 exon12 c.A1438T p.K480X AGATTTTATTATT . 81.0 26.0 72.0 0.0 . 751 . . . none . . PASS Atlas-SNP GAD1 2571 hgsc.bcm.edu hg19 2 171700591 171700591 + Missense_Mutation SNP G G T novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . GAD1 NM_000817 exon7 c.G675T p.M225I CCTCATGGAACAA . 119.0 40.0 122.0 0.0 . 79 . . . none . . PASS Atlas-SNP MSTN 2660 hgsc.bcm.edu hg19 2 190927181 190927181 + Missense_Mutation SNP T T C novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . MSTN NM_005259 exon1 c.A142G p.T48A ATTTAGTGTTTTG . 49.0 22.0 52.0 0.0 . 46 . . . none . . PASS Atlas-SNP C2orf69 205327 hgsc.bcm.edu hg19 2 200789854 200789854 + Missense_Mutation SNP G G T novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . C2orf69 NM_153689 exon2 c.G403T p.A135S AATGTTGCTACCA . 92.0 31.0 56.0 0.0 . 17 . . . none . . PASS Atlas-SNP DGKD 8527 hgsc.bcm.edu hg19 2 234368926 234368926 + Missense_Mutation SNP G G T novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . DGKD NM_152879 exon24 c.G2916T p.M972I GGAGATGCTGTCC . 376.0 143.0 544.0 1.0 . 106 . . . none . . PASS Atlas-SNP SATB1 6304 hgsc.bcm.edu hg19 3 18390936 18390936 + Missense_Mutation SNP T T C novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . SATB1 NM_001195470 exon12 c.A2114G p.E705G ATGGCCTCTTCGT . 175.0 73.0 202.0 0.0 . 96 . . . none . . PASS Atlas-SNP EPM2AIP1 9852 hgsc.bcm.edu hg19 3 37033483 37033483 + Missense_Mutation SNP C C A novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . EPM2AIP1 NM_014805 exon1 c.G1086T p.L362F TGAAACCAAGAAC . 62.0 10.0 62.0 0.0 . 47 . . . none . . PASS Atlas-SNP LIMD1 8994 hgsc.bcm.edu hg19 3 45637412 45637412 + Missense_Mutation SNP T T G novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . LIMD1 NM_014240 exon1 c.T1041G p.S347R TTCCAGTTCTGCC . 231.0 79.0 251.0 0.0 . 34 . . . none . . PASS Atlas-SNP DNAH1 25981 hgsc.bcm.edu hg19 3 52416419 52416419 + Missense_Mutation SNP T T C novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . DNAH1 NM_015512 exon50 c.T7889C p.L2630P TCCTGCTCAAGGC . 143.0 57.0 197.0 0.0 . 534 . . . none . . PASS Atlas-SNP IGSF10 285313 hgsc.bcm.edu hg19 3 151166796 151166796 + Missense_Mutation SNP C C T novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 IGSF10,NS,malignant_melanoma,0,1 IGSF10 NM_178822 exon4 c.G973A p.G325R CATTTCCAGACTG . 117.0 46.0 126.0 0.0 . 279 . . . none . . PASS Atlas-SNP BOD1L1 259282 hgsc.bcm.edu hg19 4 13601745 13601745 + Missense_Mutation SNP G G A novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 BOD1L,colon,carcinoma,0,1 . NM_148894 exon10 c.C6779T p.S2260L TCCACCGAGCTCG . 149.0 16.0 171.0 0.0 . . . . . none . . PASS Atlas-SNP RUFY3 22902 hgsc.bcm.edu hg19 4 71588406 71588406 + Missense_Mutation SNP G G T novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . RUFY3 NM_001037442 exon1 c.G116T p.W39L GAGAATGGCTCTG . 247.0 93.0 284.0 1.0 . 61 . . . none . . PASS Atlas-SNP TAF7 6879 hgsc.bcm.edu hg19 5 140699374 140699374 + Missense_Mutation SNP T T C novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . TAF7 NM_005642 exon1 c.A238G p.I80V TATCAATGGTTTT . 90.0 29.0 111.0 0.0 . 28 . . . none . . PASS Atlas-SNP TFAP2A 7020 hgsc.bcm.edu hg19 6 10398689 10398689 + Missense_Mutation SNP G G C novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . TFAP2A NM_003220 exon7 c.C1275G p.N425K TTTGGCGTTGTTG . 146.0 46.0 193.0 0.0 . 129 . . . none . . PASS Atlas-SNP KIF13A 63971 hgsc.bcm.edu hg19 6 17817447 17817447 + Missense_Mutation SNP C C T novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . KIF13A NM_001105567 exon17 c.G1804A p.V602I CCTGAACCACATT . 131.0 41.0 153.0 0.0 . 276 . . . none . . PASS Atlas-SNP UHRF1BP1 54887 hgsc.bcm.edu hg19 6 34825520 34825520 + Silent SNP C C T novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . UHRF1BP1 NM_017754 exon13 c.C1593T p.Y531Y TCTCTACATTCAG . 144.0 9.0 174.0 0.0 . 102 . . . none . . PASS Atlas-SNP COL12A1 1303 hgsc.bcm.edu hg19 6 75861881 75861881 + Silent SNP T T C novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . COL12A1 NM_004370 exon19 c.A3801G p.A1267A CAAGTTTGCCACA . 199.0 74.0 211.0 0.0 . 385 . . . none . . PASS Atlas-SNP TMEM30A 55754 hgsc.bcm.edu hg19 6 75977367 75977367 + Missense_Mutation SNP T T A novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . TMEM30A NM_018247 exon2 c.A335T p.K112M AATGACTTTTCCA . 44.0 18.0 41.0 0.0 . 40 . . . none . . PASS Atlas-SNP HDAC2 3066 hgsc.bcm.edu hg19 6 114264645 114264645 + Silent SNP A A C novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . HDAC2 NM_001527 exon12 c.T1248G p.A416A ATCACAAGCTATC . 15.0 8.0 16.0 0.0 . 102 . . . none . . PASS Atlas-SNP ELMO1 9844 hgsc.bcm.edu hg19 7 37053037 37053037 + Missense_Mutation SNP C C T novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . ELMO1 NM_014800 exon16 c.G1304A p.S435N GTCTCACTAGCTG . 88.0 31.0 122.0 0.0 . 141 . . . none . . PASS Atlas-SNP MLL5 55904 hgsc.bcm.edu hg19 7 104717538 104717538 + Missense_Mutation SNP G G C novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . MLL5 NM_018682 exon9 c.G897C p.E299D GAGGGAGGCACAA . 166.0 19.0 180.0 0.0 . 173 . . . none . . PASS Atlas-SNP MET 4233 hgsc.bcm.edu hg19 7 116423474 116423474 + Missense_Mutation SNP T T C rs121913245 TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 MET,rectum,carcinoma,+1,5 MET NM_001127500 exon19 c.T3803C p.M1268T AGTGGATGGCTTT . 83.0 27.0 98.0 0.0 . 412 . . . weak . . PASS Atlas-SNP GPR37 2861 hgsc.bcm.edu hg19 7 124405027 124405027 + Nonsense_Mutation SNP G G A novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . GPR37 NM_005302 exon1 c.C4T p.R2X GGGCTCGCATGGC . 6.0 4.0 4.0 0.0 . 89 . . . none . . PASS Atlas-SNP NRG1 3084 hgsc.bcm.edu hg19 8 32616873 32616873 + Missense_Mutation SNP A A T novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . NRG1 NM_013956 exon11 c.A995T p.E332V AGAGAGAAGCAGA . 145.0 41.0 157.0 0.0 . 260 . . . none . . PASS Atlas-SNP NKX6-3 157848 hgsc.bcm.edu hg19 8 41504065 41504065 + Missense_Mutation SNP G G T novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . NKX6-3 NM_152568 exon2 c.C311A p.P104Q TCCAGCGGCTTGT . 24.0 15.0 32.0 0.0 . 10 . . . none . . PASS Atlas-SNP NCOA2 10499 hgsc.bcm.edu hg19 8 71053580 71053580 + Missense_Mutation SNP G G A novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 NCOA2,NS,carcinoma,0,1 NCOA2 NM_006540 exon14 c.C2867T p.P956L CTCTGCGGTGCCC . 152.0 28.0 155.0 0.0 . 147 . . . none . . PASS Atlas-SNP CSMD3 114788 hgsc.bcm.edu hg19 8 113316994 113316994 + Missense_Mutation SNP G G A novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . CSMD3 NM_198123 exon52 c.C8222T p.P2741L CCATTAGGAAGAC . 136.0 53.0 151.0 0.0 . 2325 . . . none . . PASS Atlas-SNP PHF20L1 51105 hgsc.bcm.edu hg19 8 133806739 133806739 + Missense_Mutation SNP A A G novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . PHF20L1 NM_016018 exon3 c.A167G p.E56G ATGATGAGTGGAT . 140.0 48.0 130.0 0.0 . 129 . . . none . . PASS Atlas-SNP PALM2 114299 hgsc.bcm.edu hg19 9 112705604 112705604 + Missense_Mutation SNP A A G novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . PALM2 NM_053016 exon7 c.A1135G p.T379A GACACCACAGAGC . 128.0 19.0 118.0 0.0 . 51 . . . none . . PASS Atlas-SNP FAM102A 399665 hgsc.bcm.edu hg19 9 130707096 130707096 + Silent SNP G G A novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . FAM102A NM_001035254 exon9 c.C999T p.I333I CTGCACGATCTTC . 39.0 23.0 60.0 0.0 . 32 . . . none . . PASS Atlas-SNP INS 3630 hgsc.bcm.edu hg19 11 2181135 2181135 + Missense_Mutation SNP G G T novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . INS NM_001185097 exon3 c.C280A p.Q94K AGCATTGTTCCAC . 51.0 18.0 73.0 0.0 . 10 . . . none . . PASS Atlas-SNP PDE3B 5140 hgsc.bcm.edu hg19 11 14808189 14808189 + Missense_Mutation SNP A A T novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . PDE3B NM_000922 exon3 c.A1236T p.E412D TTCTGAAATAGAG . 150.0 59.0 169.0 0.0 . 98 . . . none . . PASS Atlas-SNP CHRM1 1128 hgsc.bcm.edu hg19 11 62677207 62677207 + Missense_Mutation SNP G G A novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . CHRM1 NM_000738 exon2 c.C1366T p.P456S GGGAGGGAGTGCG . 70.0 15.0 86.0 0.0 . 29 . . . none . . PASS Atlas-SNP CHRM1 1128 hgsc.bcm.edu hg19 11 62677510 62677510 + Missense_Mutation SNP A A T novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . CHRM1 NM_000738 exon2 c.T1063A p.F355I GCGAGAAGGTCTT . 59.0 25.0 78.0 0.0 . 29 . . . none . . PASS Atlas-SNP SYTL2 54843 hgsc.bcm.edu hg19 11 85409045 85409045 + Missense_Mutation SNP A A C novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . SYTL2 NM_206927 exon11 c.T3444G p.S1148R TAGATGACTTCCC . 50.0 7.0 52.0 0.0 . 231 . . . none . . PASS Atlas-SNP NCAPD3 23310 hgsc.bcm.edu hg19 11 134063948 134063948 + Missense_Mutation SNP C C T novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . NCAPD3 NM_015261 exon15 c.G1787A p.R596Q TGCTTCCGGACAG . 100.0 14.0 101.0 0.0 . 141 . . . none . . PASS Atlas-SNP FAM186A 121006 hgsc.bcm.edu hg19 12 50745132 50745132 + Missense_Mutation SNP G G T novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 FAM186A_ENST00000327337,caecum,carcinoma,0,1 FAM186A NM_001145475 exon4 c.C5483A p.S1828Y GCCCGAGATATTG . 72.0 33.0 89.0 0.0 . 181 . . . none . . PASS Atlas-SNP GALNT6 11226 hgsc.bcm.edu hg19 12 51758021 51758021 + Silent SNP G G C novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 GALNT6,NS,carcinoma,0,1 GALNT6 NM_007210 exon6 c.C933G p.P311P CTGGACGGGCTTG . 270.0 97.0 291.0 0.0 . 63 . . . none . . PASS Atlas-SNP GCN1L1 10985 hgsc.bcm.edu hg19 12 120569801 120569801 + Missense_Mutation SNP C C T novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . GCN1L1 NM_006836 exon54 c.G7343A p.G2448E AGGCACCCGGCTG . 173.0 25.0 221.0 0.0 . 207 . . . none . . PASS Atlas-SNP ATP11A 23250 hgsc.bcm.edu hg19 13 113526110 113526110 + Missense_Mutation SNP T T C novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . ATP11A NM_032189 exon26 c.T3053C p.L1018P TTACACTAAAGGT . 77.0 33.0 99.0 0.0 . 225 . . . none . . PASS Atlas-SNP GPHN 10243 hgsc.bcm.edu hg19 14 67291218 67291218 + Missense_Mutation SNP A A C novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . GPHN NM_001024218 exon4 c.A228C p.E76D TGATGAAAAGGAA . 70.0 19.0 94.0 0.0 . 79 . . . none . . PASS Atlas-SNP VPS13C 54832 hgsc.bcm.edu hg19 15 62211634 62211634 + Missense_Mutation SNP T T C novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . VPS13C NM_020821 exon58 c.A7492G p.T2498A CTTCTGTATATCC . 103.0 42.0 83.0 0.0 . 506 . . . none . . PASS Atlas-SNP RPL3L 6123 hgsc.bcm.edu hg19 16 1995508 1995508 + Missense_Mutation SNP C C A novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . RPL3L NM_005061 exon9 c.G1159T p.A387S TGAAGGCCCTCTT . 66.0 27.0 89.0 0.0 . 42 . . . none . . PASS Atlas-SNP SCNN1B 6338 hgsc.bcm.edu hg19 16 23360139 23360139 + Silent SNP C C G novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . SCNN1B NM_000336 exon2 c.C219G p.T73T CAGGACCTACTTG . 227.0 102.0 289.0 0.0 . 81 . . . none . . PASS Atlas-SNP MYLK3 91807 hgsc.bcm.edu hg19 16 46781755 46781755 + Missense_Mutation SNP C C A novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . MYLK3 NM_182493 exon1 c.G351T p.M117I AGCCACCATCCTG . 93.0 48.0 146.0 0.0 . 82 . . . none . . PASS Atlas-SNP EDC4 23644 hgsc.bcm.edu hg19 16 67910858 67910858 + Missense_Mutation SNP T T G novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . EDC4 NM_014329 exon4 c.T434G p.L145W CCTTCTTGGCCTA . 123.0 50.0 173.0 0.0 . 101 . . . none . . PASS Atlas-SNP MYO15A 51168 hgsc.bcm.edu hg19 17 18057182 18057182 + Missense_Mutation SNP C C G novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . MYO15A NM_016239 exon42 c.C8060G p.A2687G AGGACGCCCCCTG . 294.0 70.0 272.0 0.0 . 268 . . . none . . PASS Atlas-SNP ITGA2B 3674 hgsc.bcm.edu hg19 17 42449792 42449792 + Splice_Site SNP C C T novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . ITGA2B NM_000419 exon31 c.3061-1G>A . GCCGACCTGGGGG . 97.0 22.0 84.0 0.0 . 88 . . . none . . PASS Atlas-SNP C17orf104 284071 hgsc.bcm.edu hg19 17 42744196 42744196 + Missense_Mutation SNP A A T novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . C17orf104 NM_001145080 exon5 c.A917T p.Q306L TACAGCAAAAAAG . 40.0 14.0 43.0 0.0 . 75 . . . none . . PASS Atlas-SNP SPAG9 9043 hgsc.bcm.edu hg19 17 49067112 49067112 + Silent SNP G G T novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . SPAG9 NM_001130528 exon21 c.C2739A p.V913V TGTGTAGACGCCA . 259.0 56.0 221.0 0.0 . 151 . . . none . . PASS Atlas-SNP METTL23 124512 hgsc.bcm.edu hg19 17 74729098 74729098 + Silent SNP C C A novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . METTL23 NM_001206984 exon3 c.C123A p.A41A GGCTGCCAAATGT . 80.0 13.0 74.0 0.0 . 19 . . . none . . PASS Atlas-SNP AATK 9625 hgsc.bcm.edu hg19 17 79095314 79095314 + Missense_Mutation SNP G G T novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . AATK NM_001080395 exon11 c.C2422A p.P808T GAAGTGGGGCTCC . 60.0 15.0 69.0 0.0 . 102 . . . none . . PASS Atlas-SNP MALT1 10892 hgsc.bcm.edu hg19 18 56400802 56400802 + Missense_Mutation SNP A A G novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . MALT1 NM_006785 exon11 c.A1396G p.K466E TGTAGGAAAAGGT . 66.0 5.0 59.0 0.0 . 55 . . . none . . PASS Atlas-SNP ZNF799 90576 hgsc.bcm.edu hg19 19 12502161 12502161 + Missense_Mutation SNP A A T novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 ZNF799_ENST00000430385,NS,carcinoma,0,2 ZNF799 NM_001080821 exon4 c.T1051A p.S351T TCAGTGAACTAGG . 81.0 5.0 100.0 1.0 . 111 . . . none . . PASS Atlas-SNP SYDE1 85360 hgsc.bcm.edu hg19 19 15220001 15220001 + Missense_Mutation SNP A A T novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . SYDE1 NM_033025 exon2 c.A223T p.S75C CTGCAAAGCCTGG . 37.0 13.0 51.0 0.0 . 44 . . . none . . PASS Atlas-SNP WDR87 83889 hgsc.bcm.edu hg19 19 38385244 38385244 + Missense_Mutation SNP G G T novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . WDR87 NM_031951 exon4 c.C982A p.Q328K GCAACTGCTGGGG . 285.0 26.0 332.0 0.0 . 191 . . . none . . PASS Atlas-SNP PLTP 5360 hgsc.bcm.edu hg19 20 44539886 44539886 + Silent SNP C C T novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . PLTP NM_182676 exon3 c.G105A p.K35K CTCCTGCTTCACT . 91.0 32.0 124.0 0.0 . 49 . . . none . . PASS Atlas-SNP SAMSN1 64092 hgsc.bcm.edu hg19 21 15889252 15889252 + Missense_Mutation SNP T T A novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . SAMSN1 NM_001256370 exon4 c.A444T p.K148N ACCCACTTTTTTC . 51.0 21.0 47.0 0.0 . 112 . . . none . . PASS Atlas-SNP TRPM2 7226 hgsc.bcm.edu hg19 21 45825794 45825794 + Silent SNP C C T novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . TRPM2 NM_003307 exon18 c.C2664T p.I888I GCTCATCCCGGCG . 19.0 10.0 18.0 0.0 . 196 . . . none . . PASS Atlas-SNP ADORA2A 135 hgsc.bcm.edu hg19 22 24836558 24836558 + Missense_Mutation SNP G G T novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . ADORA2A NM_000675 exon3 c.G340T p.G114C TACAATGGCTTGG . 129.0 50.0 155.0 0.0 . 44 . . . none . . PASS Atlas-SNP SMC1A 8243 hgsc.bcm.edu hg19 X 53440302 53440302 + Silent SNP C C G novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . SMC1A NM_006306 exon4 c.G495C p.A165A CTCCTGCGCCAGC . 50.0 40.0 102.0 0.0 . 112 . . . none . . PASS Atlas-SNP GLRA4 441509 hgsc.bcm.edu hg19 X 102973934 102973934 + Silent SNP T T A novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . GLRA4 NM_001172285 exon7 c.A984T p.P328P GATGAATGGGAAA . 86.0 22.0 100.0 0.0 . 86 . . . none . . PASS Atlas-SNP UPF3B 65109 hgsc.bcm.edu hg19 X 118985467 118985467 + Missense_Mutation SNP C C G novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . UPF3B NM_023010 exon3 c.G361C p.D121H TATTGTCAAGGAA . 159.0 121.0 214.0 1.0 . 74 . . . none . . PASS Atlas-SNP CENPL 91687 hgsc.bcm.edu hg19 1 173772297 173772298 + Frame_Shift_Ins INS - - T novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . CENPL NM_001127181 exon6 c.905_906insA p.I302fs . . 74.0 18.0 123.0 0.0 . 26 . 0.243243 0 none . . PASS Atlas-INDEL LAMB4 22798 hgsc.bcm.edu hg19 7 107732109 107732120 + In_Frame_Del DEL CCTCGTAGAGAT CCTCGTAGAGAT - novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 CCTCGTAGAGAT CCTCGTAGAGAT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . LAMB4 NM_007356 exon14 c.1653_1664del p.551_555del . . 119.0 23.0 174.0 0.0 . 253 . 0.193277 0 none . . PASS Atlas-Indel,Pindel FBXW7 55294 hgsc.bcm.edu hg19 4 153250883 153250883 + Frame_Shift_Del DEL G G - novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 FBXW7_NM_018315_2,NS,carcinoma,-1,5 FBXW7 NM_033632 exon8 c.1178delG p.R393fs . . 98.0 35.0 89.0 0.0 . 2157 . 0.357143 0 none . . PASS Atlas-Indel,Pindel PDCD5 9141 hgsc.bcm.edu hg19 19 33077794 33077794 + Frame_Shift_Del DEL A A - novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . PDCD5 NM_004708 exon5 c.288delT p.L96fs . . 124.0 43.0 144.0 0.0 . 18 . 0.346774 0 none . . PASS Atlas-Indel,Pindel MAP3K7 6885 hgsc.bcm.edu hg19 6 91226399 91226400 + Frame_Shift_Del DEL GC GC - novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 GC GC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . MAP3K7 NM_145331 exon17 c.1642_1643del p.548_548del . . 66.0 20.0 76.0 0.0 . 100 . 0.30303 0 none . . PASS Atlas-INDEL YARS2 51067 hgsc.bcm.edu hg19 12 32908454 32908454 + Frame_Shift_Del DEL G G - novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 YARS2,larynx,carcinoma,0,1 YARS2 NM_001040436 exon1 c.356delT p.L119fs . . 47.0 18.0 29.0 0.0 . 33 . 0.382979 0 none . . PASS Atlas-INDEL AKR1C2 1646 hgsc.bcm.edu hg19 10 5038014 5038014 + Frame_Shift_Del DEL A A - novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . AKR1C2 NM_001354 exon8 c.615delC p.F205fs . . 638.0 51.0 706.0 0.0 . 68 . 0.0799373 0 none . . PASS Atlas-Indel,Pindel PTPN3 5774 hgsc.bcm.edu hg19 9 112219466 112219466 + Frame_Shift_Del DEL C C - novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . PTPN3 NM_001145368 exon4 c.277delA p.K93fs . . 113.0 32.0 167.0 0.0 . 106 . 0.283186 0 none . . PASS Atlas-Indel,Pindel CEP350 9857 hgsc.bcm.edu hg19 1 179959644 179959645 + Frame_Shift_Del DEL GA GA - novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 GA GA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . CEP350 NM_014810 exon4 c.122_123del p.41_41del . . 66.0 14.0 67.0 0.0 . 418 . 0.212121 0 none . . PASS Atlas-Indel,Pindel GRIK2 2898 hgsc.bcm.edu hg19 6 102513771 102513771 + Frame_Shift_Del DEL T T - novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . GRIK2 NM_001166247 exon16 c.2661delA p.S887fs . . 80.0 37.0 96.0 0.0 . 487 . 0.4625 0 none . . PASS Atlas-Indel,Pindel NEFH 4744 hgsc.bcm.edu hg19 22 29885591 29885592 + In_Frame_Ins INS - - CCTGAGAAGGCCAAGTCC novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 .,2 NEFH NM_021076 exon4 c.1962_1963insCCTGAGAAGGCCAAGTCC p.S654delinsSPEKAKS . . 226.0 59.0 329.0 0.0 . 178 . 0.261062 0 none . . PASS Atlas-INDEL SCN10A 6336 hgsc.bcm.edu hg19 3 38740022 38740022 + Frame_Shift_Del DEL A A - novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . SCN10A NM_006514 exon27 c.4690delC p.Q1564fs . . 107.0 18.0 158.0 0.0 . 359 . 0.168224 0 none . . PASS Atlas-INDEL ZNF792 126375 hgsc.bcm.edu hg19 19 35450211 35450211 + Frame_Shift_Del DEL T T - novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . ZNF792 NM_175872 exon4 c.549delC p.N183fs . . 273.0 101.0 348.0 0.0 . 46 . 0.369963 0 none . . PASS Atlas-Indel,Pindel PPIP5K1 9677 hgsc.bcm.edu hg19 15 43863609 43863609 + Splice_Site DEL C C - novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . PPIP5K1 NM_014659 exon25 c.2955+2G>- . . . 91.0 18.0 106.0 0.0 . 34 . 0.197802 0 none . . PASS Atlas-INDEL MTG1 92170 hgsc.bcm.edu hg19 10 135209749 135209750 + Frame_Shift_Ins INS - - GC novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . MTG1 NM_138384 exon3 c.260_261insGC p.L87fs . . 108.0 42.0 139.0 0.0 . 38 . 0.388889 0 none . . PASS Atlas-Indel,Pindel ZNF831 128611 hgsc.bcm.edu hg19 20 57782069 57782069 + Frame_Shift_Del DEL A A - novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . ZNF831 NM_178457 exon3 c.3984delG p.L1328fs . . 104.0 43.0 108.0 0.0 . 287 . 0.413462 0 none . . PASS Atlas-Indel,Pindel SCN10A 6336 hgsc.bcm.edu hg19 3 38740016 38740018 + In_Frame_Del DEL ACT ACT - novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 ACT ACT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . SCN10A NM_006514 exon27 c.4694_4696del p.1565_1566del . . 118.0 18.0 164.0 0.0 . 359 . 0.152542 0 none . . PASS Atlas-INDEL MAP3K7 6885 hgsc.bcm.edu hg19 6 91226399 91226401 + In_Frame_Del DEL GCC GCC - novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 GCC GCC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . MAP3K7 NM_145331 exon17 c.1641_1643del p.547_548del . . 67.0 13.0 77.0 0.0 . 100 . 0.194 . none . . PASS Pindel ABCA4 24 hgsc.bcm.edu hg19 1 94522320 94522320 + Frame_Shift_Del DEL A A - novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . ABCA4 NM_000350 exon15 c.2220delC p.F740fs . . 231.0 60.0 322.0 0.0 . 275 . 0.260 . none . . PASS Pindel ZNF256 10172 hgsc.bcm.edu hg19 19 58452565 58452565 + Frame_Shift_Del DEL A A - novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . ZNF256 NM_005773 exon3 c.1612delA p.R538fs . . 98.0 19.0 129.0 0.0 . 117 . 0.194 . none . . PASS Pindel SCN10A 6336 hgsc.bcm.edu hg19 3 38740016 38740023 + Frame_Shift_Del DEL ACTTTGAA ACTTTGAA - novel TCGA-MH-A561-01A-11D-A26P-10 TCGA-MH-A561-10A-01D-A26P-10 ACTTTGAA ACTTTGAA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da ebf9ee83-790d-43a8-ae04-e32e2f61bfa6 . SCN10A NM_006514 exon27 c.4689_4696del p.1563_1566del . . 119.0 15.0 162.0 0.0 . 359 . 0.126 . none . . PASS Pindel