Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
HCRTR1	3061	hgsc.bcm.edu	hg19	1	32092534	32092534	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	HCRTR1	NM_001525	exon9	c.A1231C	p.I411L	TCCAAAATCTCTG	.	36.0	14.0	43.0	0.0	.	20	.	.	.	none	.	.	PASS	Atlas-SNP
MUTYH	4595	hgsc.bcm.edu	hg19	1	45797966	45797966	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	MUTYH	NM_001128425	exon10	c.C805G	p.L269V	CCACCAGCTGCTG	.	46.0	10.0	54.0	0.0	.	38	.	.	.	none	.	.	PASS	Atlas-SNP
LRP8	7804	hgsc.bcm.edu	hg19	1	53722944	53722944	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	LRP8	NM_004631	exon15	c.T2402G	p.L801R	GGGCTTAGGGTAG	.	197.0	82.0	142.0	0.0	.	58	.	.	.	none	.	.	PASS	Atlas-SNP
PIGK	10026	hgsc.bcm.edu	hg19	1	77620232	77620232	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	PIGK	NM_005482	exon9	c.A888C	p.K296N	TACATTTTTAGGA	.	219.0	88.0	162.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
GON4L	54856	hgsc.bcm.edu	hg19	1	155823224	155823224	+	Silent	SNP	T	T	G	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	GON4L	NM_001037533	exon2	c.A348C	p.I116I	AATGTGTATATTA	.	106.0	35.0	133.0	0.0	.	392	.	.	.	none	.	.	PASS	Atlas-SNP
FAM5B	57795	hgsc.bcm.edu	hg19	1	177245534	177245534	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	FAM5B	NM_021165	exon6	c.T976C	p.S326P	CAGGACTCCTGGG	.	150.0	59.0	117.0	0.0	.	191	.	.	.	none	.	.	PASS	Atlas-SNP
JMJD4	65094	hgsc.bcm.edu	hg19	1	227921688	227921688	+	Silent	SNP	C	C	G	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	JMJD4	NM_023007	exon3	c.G612C	p.S204S	GTCGGACGAGAAG	.	22.0	6.0	24.0	0.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
ABCB10	23456	hgsc.bcm.edu	hg19	1	229666004	229666004	+	Silent	SNP	A	A	G	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	ABCB10	NM_012089	exon8	c.T1587C	p.S529S	AGAACCACTTGGG	.	34.0	14.0	27.0	0.0	.	71	.	.	.	none	.	.	PASS	Atlas-SNP
TGOLN2	10618	hgsc.bcm.edu	hg19	2	85554384	85554384	+	Silent	SNP	C	C	T	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	TGOLN2	NM_001206841	exon2	c.G471A	p.E157E	CTTTGCCTCCGCA	.	159.0	63.0	237.0	0.0	.	32	.	.	.	none	.	.	PASS	Atlas-SNP
GPR39	2863	hgsc.bcm.edu	hg19	2	133174849	133174849	+	Silent	SNP	G	G	T	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	GPR39	NM_001508	exon1	c.G234T	p.S78S	TTGCTCGGACATC	.	74.0	21.0	45.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
R3HDM1	23518	hgsc.bcm.edu	hg19	2	136467748	136467748	+	Missense_Mutation	SNP	C	C	G	rs143703596	alternate_allele	TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	R3HDM1	NM_015361	exon22	c.C2578G	p.H860D	TGTGATCACCAGA	.	88.0	31.0	108.0	0.0	.	84	.	.	.	alt	C|1.000;T|0.000	.	PASS	Atlas-SNP
GPR155	151556	hgsc.bcm.edu	hg19	2	175330526	175330526	+	Silent	SNP	G	G	T	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	GPR155,NS,carcinoma,0,1	GPR155	NM_001033045	exon8	c.C1371A	p.T457T	CAGGTAGGTGCTA	.	194.0	68.0	203.0	0.0	.	76	.	.	.	none	.	.	PASS	Atlas-SNP
PER2	8864	hgsc.bcm.edu	hg19	2	239155118	239155118	+	Silent	SNP	T	T	A	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	PER2	NM_022817	exon23	c.A3666T	p.P1222P	CTCATATGGTATG	.	68.0	26.0	53.0	0.0	.	85	.	.	.	none	.	.	PASS	Atlas-SNP
KIF1A	547	hgsc.bcm.edu	hg19	2	241686666	241686666	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	KIF1A	NM_001244008	exon29	c.A3050G	p.Q1017R	AAATGCTGGTCAT	.	49.0	18.0	38.0	0.0	.	152	.	.	.	none	.	.	PASS	Atlas-SNP
CADPS	8618	hgsc.bcm.edu	hg19	3	62535723	62535723	+	Silent	SNP	G	G	A	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	CADPS	NM_003716	exon11	c.C1821T	p.D607D	TTCATCGTCACTG	.	136.0	6.0	111.0	0.0	.	387	.	.	.	none	.	.	PASS	Atlas-SNP
EIF4A2	1974	hgsc.bcm.edu	hg19	3	186504962	186504962	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	EIF4A2	NM_001967	exon8	c.T818C	p.I273T	TGACCATTACACA	.	165.0	56.0	212.0	0.0	.	55	.	.	.	none	.	.	PASS	Atlas-SNP
LSG1	55341	hgsc.bcm.edu	hg19	3	194366904	194366904	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	LSG1	NM_018385	exon12	c.G1612C	p.D538H	CATAGTCCTTCAG	.	112.0	48.0	97.0	0.0	.	38	.	.	.	none	.	.	PASS	Atlas-SNP
RGS12	6002	hgsc.bcm.edu	hg19	4	3418678	3418678	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	RGS12	NM_002926	exon8	c.T2466G	p.F822L	TCGCTTTCTGAAG	.	88.0	30.0	109.0	0.0	.	128	.	.	.	none	.	.	PASS	Atlas-SNP
SLC34A2	10568	hgsc.bcm.edu	hg19	4	25664375	25664375	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	SLC34A2	NM_006424	exon3	c.A161T	p.Y54F	CGTCCTACTCCAC	.	96.0	28.0	109.0	0.0	.	93	.	.	.	none	.	.	PASS	Atlas-SNP
KDR	3791	hgsc.bcm.edu	hg19	4	55979601	55979601	+	Silent	SNP	C	C	T	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	KDR	NM_002253	exon7	c.G846A	p.G282G	CTCACTCCCAGAC	.	134.0	53.0	133.0	0.0	.	307	.	.	.	none	.	.	PASS	Atlas-SNP
C4orf32	132720	hgsc.bcm.edu	hg19	4	113066846	113066846	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	C4orf32	NM_152400	exon1	c.C110A	p.A37E	CCGGGGCGAGCCC	.	12.0	9.0	3.0	0.0	.	6	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA1109	84162	hgsc.bcm.edu	hg19	4	123236769	123236769	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	KIAA1109,NS,carcinoma,0,1	KIAA1109	NM_015312	exon59	c.G10465A	p.D3489N	ATTGCTGACTTAA	.	114.0	44.0	103.0	0.0	.	424	.	.	.	none	.	.	PASS	Atlas-SNP
PHF17	79960	hgsc.bcm.edu	hg19	4	129793111	129793111	+	Silent	SNP	T	T	A	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	PHF17	NM_199320	exon11	c.T2223A	p.P741P	AACACCTGCCAGC	.	83.0	32.0	48.0	0.0	.	63	.	.	.	none	.	.	PASS	Atlas-SNP
TARS	6897	hgsc.bcm.edu	hg19	5	33441209	33441209	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	TARS	NM_152295	exon1	c.C17A	p.A6D	AGAAGGCCAGCAG	.	61.0	28.0	82.0	0.0	.	66	.	.	.	none	.	.	PASS	Atlas-SNP
EPB41L4A	64097	hgsc.bcm.edu	hg19	5	111594984	111594984	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	EPB41L4A,caecum,carcinoma,0,5	EPB41L4A	NM_022140	exon9	c.G737A	p.R246Q	GTAATCCGAGGCC	.	73.0	33.0	56.0	0.0	.	130	.	.	.	none	.	.	PASS	Atlas-SNP
TRIM31	11074	hgsc.bcm.edu	hg19	6	30072974	30072974	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	TRIM31	NM_007028	exon7	c.A929T	p.K310I	ATGCTTTTGAAGA	.	171.0	59.0	190.0	0.0	.	40	.	.	.	none	.	.	PASS	Atlas-SNP
COL11A2	1302	hgsc.bcm.edu	hg19	6	33137181	33137181	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	COL11A2	NM_080680	exon51	c.T3777A	p.D1259E	GCCATCATCGCCT	.	17.0	8.0	31.0	0.0	.	124	.	.	.	none	.	.	PASS	Atlas-SNP
FOXP4	116113	hgsc.bcm.edu	hg19	6	41553179	41553179	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	FOXP4	NM_138457	exon5	c.A434G	p.Y145C	AGGAGTACTACAA	.	100.0	30.0	110.0	0.0	.	83	.	.	.	none	.	.	PASS	Atlas-SNP
XPO5	57510	hgsc.bcm.edu	hg19	6	43499248	43499248	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	XPO5	NM_020750	exon22	c.C2509A	p.Q837K	AACGCTGCATTCT	.	105.0	40.0	115.0	0.0	.	79	.	.	.	none	.	.	PASS	Atlas-SNP
HNRNPA2B1	3181	hgsc.bcm.edu	hg19	7	26235474	26235474	+	Silent	SNP	T	T	C	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	HNRNPA2B1	NM_031243	exon8	c.A750G	p.G250G	TCCAGGTCCTCCT	.	82.0	37.0	87.0	0.0	.	70	.	.	.	none	.	.	PASS	Atlas-SNP
DMTF1	9988	hgsc.bcm.edu	hg19	7	86820330	86820330	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	DMTF1,colon,carcinoma,0,1	DMTF1	NM_001142327	exon14	c.T1481G	p.F494C	AGACATTTGAGAT	.	54.0	20.0	40.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
TMEM213	155006	hgsc.bcm.edu	hg19	7	138486107	138486107	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	TMEM213	NM_001085429	exon2	c.C118A	p.H40N	ACCGCTCACCACC	.	46.0	17.0	62.0	0.0	.	20	.	.	.	none	.	.	PASS	Atlas-SNP
ADCK2	90956	hgsc.bcm.edu	hg19	7	140374550	140374550	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	ADCK2	NM_052853	exon2	c.T1073C	p.V358A	TGATGGTCCAACA	.	99.0	49.0	99.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
DDHD2	23259	hgsc.bcm.edu	hg19	8	38092031	38092031	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	DDHD2	NM_001164232	exon3	c.A340G	p.T114A	CGATGTACGTGGT	.	126.0	44.0	153.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
PLEC	5339	hgsc.bcm.edu	hg19	8	144997605	144997605	+	Silent	SNP	G	G	A	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	PLEC	NM_201380	exon31	c.C6903T	p.D2301D	CTCCGCGTCAGCT	.	66.0	6.0	86.0	0.0	.	1144	.	.	.	none	.	.	PASS	Atlas-SNP
LOXL4	84171	hgsc.bcm.edu	hg19	10	100020789	100020789	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	LOXL4	NM_032211	exon4	c.G552T	p.E184D	GTGGCCCTCATAC	.	60.0	24.0	56.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
BIRC2	329	hgsc.bcm.edu	hg19	11	102220675	102220675	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	BIRC2	NM_001256163	exon2	c.T90G	p.D30E	GTCAGATTGGACA	.	152.0	64.0	187.0	0.0	.	51	.	.	.	none	.	.	PASS	Atlas-SNP
DLAT	1737	hgsc.bcm.edu	hg19	11	111899514	111899514	+	Splice_Site	SNP	A	A	T	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	DLAT	NM_001931	exon4	c.507-2A>T	.	TTCCTTAGGCCTG	.	68.0	25.0	99.0	0.0	.	39	.	.	.	none	.	.	PASS	Atlas-SNP
ARHGAP32	9743	hgsc.bcm.edu	hg19	11	128846491	128846491	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	ARHGAP32_ENST00000310343,right_lower_lobe,carcinoma,0,2	ARHGAP32	NM_001142685	exon19	c.G2119C	p.E707Q	ACTCCTCACTTTT	.	182.0	67.0	151.0	0.0	.	307	.	.	.	none	.	.	PASS	Atlas-SNP
KRT5	3852	hgsc.bcm.edu	hg19	12	52910546	52910546	+	Silent	SNP	G	G	A	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	KRT5,NS,haematopoietic_neoplasm,0,1	KRT5	NM_000424	exon7	c.C1314T	p.A438A	CTGCAGGGCCTCC	.	73.0	24.0	76.0	0.0	.	88	.	.	.	none	.	.	PASS	Atlas-SNP
ESYT1	23344	hgsc.bcm.edu	hg19	12	56536880	56536880	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	ESYT1	NM_001184796	exon28	c.A3097G	p.K1033E	GGCACCAAGAGGA	.	53.0	26.0	66.0	0.0	.	84	.	.	.	none	.	.	PASS	Atlas-SNP
IFT81	28981	hgsc.bcm.edu	hg19	12	110618356	110618356	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	IFT81	NM_014055	exon12	c.G1318A	p.E440K	CGTCATGAAAATA	.	61.0	21.0	77.0	0.0	.	86	.	.	.	none	.	.	PASS	Atlas-SNP
IFT81	28981	hgsc.bcm.edu	hg19	12	110618362	110618362	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	IFT81	NM_014055	exon12	c.A1324T	p.I442F	GAAAATATTCAAC	.	59.0	20.0	74.0	0.0	.	86	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA1737	85457	hgsc.bcm.edu	hg19	14	77580331	77580331	+	Silent	SNP	C	C	T	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	KIAA1737	NM_033426	exon4	c.C870T	p.S290S	TTATAGCTCACCT	.	62.0	26.0	80.0	0.0	.	26	.	.	.	none	.	.	PASS	Atlas-SNP
CHTF18	63922	hgsc.bcm.edu	hg19	16	841194	841194	+	Missense_Mutation	SNP	T	T	G	rs374149034		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	CHTF18	NM_022092	exon8	c.T928G	p.L310V	CTGAAGTTGTGGG	.	51.0	19.0	36.0	0.0	.	52	.	.	.	weak	.	.	PASS	Atlas-SNP
CREBBP	1387	hgsc.bcm.edu	hg19	16	3860645	3860645	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	CREBBP	NM_001079846	exon3	c.A934G	p.T312A	TATCTGTAGGGAA	.	95.0	29.0	121.0	0.0	.	546	.	.	.	none	.	.	PASS	Atlas-SNP
TMEM186	25880	hgsc.bcm.edu	hg19	16	8890188	8890188	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	TMEM186	NM_015421	exon2	c.C263T	p.P88L	TAGCCTGGTGGCA	.	57.0	23.0	70.0	0.0	.	21	.	.	.	none	.	.	PASS	Atlas-SNP
SRCAP	10847	hgsc.bcm.edu	hg19	16	30731535	30731535	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	SRCAP	NM_006662	exon19	c.G2870A	p.R957Q	TCTCTCGATATGA	.	143.0	60.0	159.0	0.0	.	298	.	.	.	none	.	.	PASS	Atlas-SNP
CIRH1A	84916	hgsc.bcm.edu	hg19	16	69170698	69170698	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	CIRH1A	NM_032830	exon3	c.G259A	p.D87N	GAGTATGATTTAC	.	226.0	85.0	304.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
ATP2C2	9914	hgsc.bcm.edu	hg19	16	84482189	84482189	+	Silent	SNP	C	C	T	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	ATP2C2	NM_014861	exon17	c.C1554T	p.R518R	GATCCGCTACTGC	.	80.0	24.0	91.0	0.0	.	75	.	.	.	none	.	.	PASS	Atlas-SNP
MLLT6	4302	hgsc.bcm.edu	hg19	17	36865775	36865775	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	MLLT6	NM_005937	exon6	c.G499C	p.E167Q	GTGCTGGAGGTGG	.	46.0	10.0	51.0	0.0	.	80	.	.	.	none	.	.	PASS	Atlas-SNP
ACLY	47	hgsc.bcm.edu	hg19	17	40054090	40054090	+	Silent	SNP	C	C	T	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	ACLY	NM_001096	exon13	c.G1341A	p.T447T	GGCTGGCGTCTGG	.	35.0	15.0	31.0	0.0	.	85	.	.	.	none	.	.	PASS	Atlas-SNP
CABLES1	91768	hgsc.bcm.edu	hg19	18	20793942	20793942	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	CABLES1	NM_001100619	exon4	c.A1012G	p.I338V	TTTAGAATAGTCC	.	65.0	26.0	60.0	0.0	.	32	.	.	.	none	.	.	PASS	Atlas-SNP
EFNA2	1943	hgsc.bcm.edu	hg19	19	1295670	1295670	+	Silent	SNP	C	C	T	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	EFNA2	NM_001405	exon2	c.C267T	p.Y89Y	GCACTACGTGCTG	.	52.0	22.0	54.0	0.0	.	8	.	.	.	none	.	.	PASS	Atlas-SNP
KDM4B	23030	hgsc.bcm.edu	hg19	19	5039997	5039997	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	KDM4B	NM_015015	exon4	c.T292C	p.Y98H	GGCGAGTACCGCC	.	46.0	23.0	57.0	0.0	.	120	.	.	.	none	.	.	PASS	Atlas-SNP
ANGPTL4	51129	hgsc.bcm.edu	hg19	19	8438718	8438718	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	ANGPTL4	NM_139314	exon7	c.T1169A	p.L390Q	ACCCGCTGCAGGC	.	47.0	19.0	59.0	0.0	.	21	.	.	.	none	.	.	PASS	Atlas-SNP
RASGRP4	115727	hgsc.bcm.edu	hg19	19	38903684	38903684	+	Silent	SNP	C	C	T	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	RASGRP4	NM_170604	exon12	c.G1422A	p.V474V	CTTGAACACAGAC	.	40.0	19.0	53.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
DLGAP4	22839	hgsc.bcm.edu	hg19	20	35060886	35060886	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	DLGAP4	NM_014902	exon2	c.A766G	p.T256A	CTCAAAACCACCA	.	67.0	26.0	78.0	0.0	.	111	.	.	.	none	.	.	PASS	Atlas-SNP
RAD23A	5886	hgsc.bcm.edu	hg19	19	13060221	13060221	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	RAD23A	NM_005053	exon7	c.811delC	p.Q271fs	.	.	52.0	25.0	65.0	0.0	.	29	.	0.480769	0	none	.	.	PASS	Atlas-Indel,Pindel
SEMA3F	6405	hgsc.bcm.edu	hg19	3	50222188	50222188	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	SEMA3F	NM_004186	exon13	c.1396delA	p.I466fs	.	.	73.0	23.0	66.0	0.0	.	62	.	0.315068	0	none	.	.	PASS	Atlas-Indel,Pindel
SLC25A11	8402	hgsc.bcm.edu	hg19	17	4841106	4841107	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	SLC25A11	NM_003562	exon8	c.875_876insC	p.H292fs	.	.	45.0	20.0	42.0	0.0	.	22	.	0.444444	0	none	.	.	PASS	Atlas-Indel,Pindel
ARG1	383	hgsc.bcm.edu	hg19	6	131903762	131903762	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	ARG1	NM_001244438	exon5	c.490delA	p.I164fs	.	.	138.0	40.0	95.0	0.0	.	33	.	0.289855	0	none	.	.	PASS	Atlas-Indel,Pindel
HIVEP3	59269	hgsc.bcm.edu	hg19	1	42047342	42047343	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	HIVEP3	NM_024503	exon4	c.3127_3128insA	p.C1043fs	.	.	60.0	19.0	50.0	0.0	.	235	.	0.316667	0	none	.	.	PASS	Atlas-Indel,Pindel
SLC17A8	246213	hgsc.bcm.edu	hg19	12	100774514	100774514	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	SLC17A8	NM_001145288	exon2	c.136delA	p.I46fs	.	.	99.0	33.0	112.0	0.0	.	89	.	0.333333	0	none	.	.	PASS	Atlas-Indel,Pindel
DAZAP1	26528	hgsc.bcm.edu	hg19	19	1428952	1428953	+	Frame_Shift_Del	DEL	GG	GG	-	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	DAZAP1	NM_018959	exon8	c.657_658del	p.219_220del	.	.	59.0	20.0	71.0	0.0	.	52	.	0.338983	0	none	.	.	PASS	Atlas-Indel,Pindel
MOCS2	4338	hgsc.bcm.edu	hg19	5	52396318	52396318	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	MOCS2	NM_004531	exon6	c.425delC	p.A142fs	.	.	165.0	57.0	121.0	0.0	.	28	.	0.345455	0	none	.	.	PASS	Atlas-Indel,Pindel
CACNA2D1	781	hgsc.bcm.edu	hg19	7	82072743	82072744	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	CACNA2D1	NM_000722	exon1	c.33_34insT	p.L11fs	.	.	68.0	22.0	74.0	0.0	.	191	.	0.323529	0	none	.	.	PASS	Atlas-Indel,Pindel
HMG20A	10363	hgsc.bcm.edu	hg19	15	77756629	77756629	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-MH-A856-01A-11D-A34Z-10	TCGA-MH-A856-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	08268f2c-7eb1-4f12-8ef8-7878585d4e39	e6f69dd8-8606-463e-a198-de6007153945	.	HMG20A	NM_018200	exon4	c.136delA	p.T46fs	.	.	211.0	56.0	241.0	0.0	.	48	.	0.265	.	none	.	.	PASS	Pindel