Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
DCLRE1B	64858	hgsc.bcm.edu	hg19	1	114454514	114454514	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	DCLRE1B	NM_022836	exon4	c.C1300T	p.H434Y	TCAGTGCACTTAA	.	134.0	18.0	135.0	0.0	.	36	.	.	.	none	.	.	PASS	Atlas-SNP
MTA3	57504	hgsc.bcm.edu	hg19	2	42886918	42886918	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	MTA3	NM_020744	exon8	c.C618A	p.F206L	GACATTCGCCAGA	.	84.0	5.0	80.0	0.0	.	39	.	.	.	none	.	.	PASS	Atlas-SNP
WDSUB1	151525	hgsc.bcm.edu	hg19	2	160139417	160139417	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	WDSUB1	NM_152528	exon2	c.A164G	p.Y55C	ACAGCATAGGTAT	.	261.0	27.0	243.0	0.0	.	39	.	.	.	none	.	.	PASS	Atlas-SNP
WDFY3	23001	hgsc.bcm.edu	hg19	4	85675021	85675021	+	Silent	SNP	T	T	C	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	WDFY3	NM_014991	exon35	c.A5568G	p.Q1856Q	TTCTGATTGCCAA	.	145.0	39.0	127.0	0.0	.	314	.	.	.	none	.	.	PASS	Atlas-SNP
SNX2	6643	hgsc.bcm.edu	hg19	5	122154607	122154607	+	Silent	SNP	T	T	G	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	SNX2	NM_003100	exon11	c.T1101G	p.L367L	TCAGCTTGCAGAG	.	123.0	7.0	100.0	0.0	.	42	.	.	.	none	.	.	PASS	Atlas-SNP
SERPINB6	5269	hgsc.bcm.edu	hg19	6	2955761	2955761	+	Silent	SNP	G	G	C	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	SERPINB6	NM_001271823	exon3	c.C366G	p.L122L	TACTGAGAGGAAA	.	94.0	9.0	88.0	0.0	.	31	.	.	.	none	.	.	PASS	Atlas-SNP
NBN	4683	hgsc.bcm.edu	hg19	8	90967743	90967743	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	NBN	NM_002485	exon10	c.A1165G	p.M389V	GTTCCATTTTGGA	.	42.0	14.0	35.0	0.0	.	86	.	.	.	none	.	.	PASS	Atlas-SNP
TAF1L	138474	hgsc.bcm.edu	hg19	9	32633310	32633310	+	Silent	SNP	G	G	A	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	TAF1L	NM_153809	exon1	c.C2268T	p.G756G	TAATTGGCCAGGA	.	254.0	20.0	254.0	0.0	.	382	.	.	.	none	.	.	PASS	Atlas-SNP
DCAF10	79269	hgsc.bcm.edu	hg19	9	37800965	37800965	+	Silent	SNP	G	G	T	rs373032176		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	DCAF10	NM_024345	exon1	c.G102T	p.P34P	CGGGCCGCCCTCG	.	12.0	8.0	0.0	0.0	.	31	.	.	.	weak	.	.	PASS	Atlas-SNP
B3GNT6	192134	hgsc.bcm.edu	hg19	11	76751497	76751497	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	B3GNT6	NM_138706	exon2	c.A902G	p.H301R	CCCGCCACACCCC	.	8.0	4.0	2.0	0.0	.	27	.	.	.	none	.	.	PASS	Atlas-SNP
GRAMD1B	57476	hgsc.bcm.edu	hg19	11	123476178	123476178	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	GRAMD1B	NM_020716	exon9	c.C886T	p.P296S	GAGGCCCCCGTCT	.	147.0	45.0	121.0	0.0	.	122	.	.	.	none	.	.	PASS	Atlas-SNP
BRAP	8315	hgsc.bcm.edu	hg19	12	112096635	112096635	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	BRAP,NS,carcinoma,0,1	BRAP	NM_006768	exon9	c.C1126T	p.R376X	CCAGTCGATGAAC	.	80.0	5.0	78.0	0.0	.	42	.	.	.	none	.	.	PASS	Atlas-SNP
SEL1L	6400	hgsc.bcm.edu	hg19	14	81969202	81969202	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	SEL1L	NM_001244984	exon6	c.G640A	p.A214T	TGCTTGCTGCCTT	.	79.0	22.0	61.0	0.0	.	67	.	.	.	none	.	.	PASS	Atlas-SNP
NLRP12	91662	hgsc.bcm.edu	hg19	19	54313633	54313633	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	NLRP12,colon,carcinoma,0,1	NLRP12	NM_144687	exon3	c.C1280A	p.T427N	CTGGACGTCTGTC	.	49.0	2.0	41.0	0.0	.	236	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF628	89887	hgsc.bcm.edu	hg19	19	55993264	55993264	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	ZNF628	NM_033113	exon3	c.C704T	p.A235V	GTACCGCCTCCGC	.	7.0	5.0	1.0	0.0	.	75	.	.	.	none	.	.	PASS	Atlas-SNP
KIF4A	24137	hgsc.bcm.edu	hg19	X	69595071	69595071	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	KIF4A	NM_012310	exon17	c.G1796A	p.R599H	GCCGCCGCAAACG	.	120.0	5.0	102.0	0.0	.	118	.	.	.	none	.	.	PASS	Atlas-SNP
RNF128	79589	hgsc.bcm.edu	hg19	X	106034465	106034465	+	Splice_Site	SNP	G	G	A	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	RNF128	NM_024539	exon6	c.1075+1G>A	.	CAACAAGTAAGCA	.	136.0	33.0	141.0	0.0	.	74	.	.	.	none	.	.	PASS	Atlas-SNP
HS3ST4	9951	hgsc.bcm.edu	hg19	16	26147018	26147018	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	HS3ST4	NM_006040	exon2	c.819delC	p.R273fs	.	.	112.0	12.0	78.0	0.0	.	120	.	0.107143	0	none	.	.	PASS	Atlas-INDEL
ZIC3	7547	hgsc.bcm.edu	hg19	X	136648984	136648985	+	In_Frame_Ins	INS	-	-	CGC	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	ZIC3	NM_003413	exon1	c.134_135insCGC	p.H45delinsHA	.	.	24.0	10.0	6.0	1.0	.	93	.	0.416667	0.166667	none	.	.	PASS	Atlas-INDEL
HS3ST4	9951	hgsc.bcm.edu	hg19	16	26147021	26147023	+	In_Frame_Del	DEL	CAC	CAC	-	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	CAC	CAC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	HS3ST4	NM_006040	exon2	c.822_824del	p.274_275del	.	.	115.0	12.0	80.0	0.0	.	120	.	0.104348	0	none	.	.	PASS	Atlas-INDEL
HS3ST4	9951	hgsc.bcm.edu	hg19	16	26147022	26147025	+	Frame_Shift_Del	DEL	ACTC	ACTC	-	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	ACTC	ACTC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	HS3ST4	NM_006040	exon2	c.823_826del	p.275_276del	.	.	117.0	10.0	82.0	0.0	.	120	.	0.085	.	none	.	.	PASS	Pindel