Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm NIPAL3 57185 hgsc.bcm.edu hg19 1 24768627 24768627 + Missense_Mutation SNP T T A novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . NIPAL3 NM_020448 exon4 c.T245A p.L82Q TGTTCCTGATGCT . 51.0 16.0 56.0 0.0 . 36 . . . none . . PASS Atlas-SNP FPGT-TNNI3K 100526835 hgsc.bcm.edu hg19 1 74808658 74808658 + Missense_Mutation SNP C C A novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b .,1 . NM_001199327 exon10 c.C1118A p.T373N GAGATACCCCCTT . 140.0 55.0 183.0 0.0 . . . . . none . . PASS Atlas-SNP WNT2B 7482 hgsc.bcm.edu hg19 1 113058824 113058824 + Missense_Mutation SNP C C A novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . WNT2B NM_024494 exon3 c.C466A p.R156S ATTACTCGCGCCT . 132.0 46.0 169.0 0.0 . 51 . . . none . . PASS Atlas-SNP PGLYRP3 114771 hgsc.bcm.edu hg19 1 153283087 153283087 + Missense_Mutation SNP C C T novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . PGLYRP3 NM_052891 exon1 c.G55A p.D19N ACTTACCCCAAGC . 129.0 47.0 196.0 0.0 . 55 . . . none . . PASS Atlas-SNP NUP210L 91181 hgsc.bcm.edu hg19 1 153974267 153974267 + Missense_Mutation SNP G G C novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . NUP210L NM_207308 exon36 c.C5125G p.Q1709E TATCTTGTTTGTG . 99.0 30.0 146.0 0.0 . 181 . . . none . . PASS Atlas-SNP HAX1 10456 hgsc.bcm.edu hg19 1 154247707 154247707 + Missense_Mutation SNP T T C novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . HAX1 NM_006118 exon5 c.T634C p.S212P AGCATCTCTGTGA . 100.0 37.0 124.0 0.0 . 25 . . . none . . PASS Atlas-SNP KIAA1614 57710 hgsc.bcm.edu hg19 1 180910417 180910417 + Missense_Mutation SNP A A T novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . KIAA1614 NM_020950 exon7 c.A3155T p.H1052L CCCTGCACCCGGT . 146.0 49.0 154.0 0.0 . 75 . . . none . . PASS Atlas-SNP CACNA1E 777 hgsc.bcm.edu hg19 1 181452978 181452978 + Missense_Mutation SNP C C G novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . CACNA1E NM_001205293 exon1 c.C98G p.S33W CGGCCTCGGGGCA . 139.0 44.0 138.0 0.0 . 778 . . . none . . PASS Atlas-SNP DNAH14 127602 hgsc.bcm.edu hg19 1 225539372 225539372 + Nonsense_Mutation SNP C C T novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . DNAH14 NM_001373 exon70 c.C11041T p.Q3681X GAAAGTCAACATC . 133.0 44.0 173.0 0.0 . 300 . . . none . . PASS Atlas-SNP SIPA1L2 57568 hgsc.bcm.edu hg19 1 232615472 232615472 + Missense_Mutation SNP A A C novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . SIPA1L2 NM_020808 exon5 c.T1986G p.D662E CGTGGAATCAGCT . 40.0 12.0 42.0 0.0 . 218 . . . none . . PASS Atlas-SNP C2orf78 388960 hgsc.bcm.edu hg19 2 74043598 74043598 + Missense_Mutation SNP T T G novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . C2orf78 NM_001080474 exon3 c.T2248G p.Y750D GTGGCTTACCCTG . 236.0 56.0 214.0 0.0 . 150 . . . none . . PASS Atlas-SNP ATF2 1386 hgsc.bcm.edu hg19 2 175945471 175945471 + Missense_Mutation SNP T T G novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . ATF2 NM_001880 exon13 c.A1208C p.N403T ACTTCATTTCTCA . 59.0 26.0 53.0 0.0 . 52 . . . none . . PASS Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179575930 179575930 + Missense_Mutation SNP G G C novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . TTN NM_001267550 exon97 c.C28033G p.P9345A CATTTGGGCTGTC . 176.0 93.0 142.0 0.0 . 18412 . . . none . . PASS Atlas-SNP SLC40A1 30061 hgsc.bcm.edu hg19 2 190428539 190428539 + Silent SNP T T A novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . SLC40A1 NM_014585 exon7 c.A1173T p.V391V CATGAATACAGAG . 117.0 25.0 119.0 0.0 . 51 . . . none . . PASS Atlas-SNP FGD5 152273 hgsc.bcm.edu hg19 3 14861143 14861143 + Missense_Mutation SNP G G A novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . FGD5 NM_152536 exon1 c.G565A p.V189I GAGGGGGTCTTCC . 125.0 51.0 101.0 0.0 . 248 . . . none . . PASS Atlas-SNP TRANK1 9881 hgsc.bcm.edu hg19 3 36898563 36898563 + Missense_Mutation SNP C C G novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . TRANK1 NM_014831 exon12 c.G2518C p.G840R TGCTTCCTTTCAG . 62.0 22.0 80.0 0.0 . 398 . . . none . . PASS Atlas-SNP DNAH1 25981 hgsc.bcm.edu hg19 3 52422336 52422336 + Missense_Mutation SNP G G C novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . DNAH1 NM_015512 exon57 c.G9157C p.V3053L AAGGCCGTGGAGC . 91.0 40.0 80.0 0.0 . 534 . . . none . . PASS Atlas-SNP OSBPL11 114885 hgsc.bcm.edu hg19 3 125266348 125266348 + Silent SNP T T C novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . OSBPL11 NM_022776 exon10 c.A1743G p.V581V CAGTTCTACCCAA . 129.0 67.0 136.0 0.0 . 64 . . . none . . PASS Atlas-SNP TRIM42 287015 hgsc.bcm.edu hg19 3 140397260 140397260 + Silent SNP C C T novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . TRIM42 NM_152616 exon1 c.C189T p.C63C CAACTGCCATTGG . 109.0 51.0 82.0 0.0 . 143 . . . none . . PASS Atlas-SNP PLD1 5337 hgsc.bcm.edu hg19 3 171362716 171362716 + Missense_Mutation SNP T T C novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . PLD1 NM_002662 exon22 c.A2527G p.M843V AGTGCATGATTGC . 86.0 19.0 75.0 0.0 . 134 . . . none . . PASS Atlas-SNP MUC20 200958 hgsc.bcm.edu hg19 3 195453023 195453023 + Missense_Mutation SNP A A G novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . MUC20 NM_152673 exon3 c.A1036G p.T346A GCCACGACCCTCA . 283.0 109.0 234.0 0.0 . 84 . . . none . . PASS Atlas-SNP TADA2B 93624 hgsc.bcm.edu hg19 4 7056602 7056602 + Silent SNP T T C novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . TADA2B NM_152293 exon2 c.T1084C p.L362L AGCTCTTTAAACT . 102.0 44.0 132.0 0.0 . 29 . . . none . . PASS Atlas-SNP MOB1B 92597 hgsc.bcm.edu hg19 4 71768265 71768265 + Missense_Mutation SNP G G T novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . . NM_001244767 exon1 c.G12T p.L4F CTTCTTGTTGTGA . 36.0 10.0 52.0 0.0 . . . . . none . . PASS Atlas-SNP PRDM5 11107 hgsc.bcm.edu hg19 4 121702315 121702315 + Missense_Mutation SNP G G A novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . PRDM5 NM_018699 exon12 c.C1426T p.L476F TTCTAAGCACTGA . 89.0 22.0 94.0 0.0 . 76 . . . none . . PASS Atlas-SNP ZNF622 90441 hgsc.bcm.edu hg19 5 16463272 16463272 + Missense_Mutation SNP T T C novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . ZNF622 NM_033414 exon3 c.A994G p.K332E AGAGCTTACAGTG . 253.0 84.0 287.0 0.0 . 49 . . . none . . PASS Atlas-SNP MAN2A1 4124 hgsc.bcm.edu hg19 5 109155930 109155930 + Missense_Mutation SNP A A C novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . MAN2A1 NM_002372 exon15 c.A2338C p.T780P ATGATGACTAAAG . 43.0 19.0 50.0 0.0 . 136 . . . none . . PASS Atlas-SNP SNCAIP 9627 hgsc.bcm.edu hg19 5 121758736 121758736 + Missense_Mutation SNP G G A novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . SNCAIP NM_005460 exon4 c.G304A p.V102M CAGAAAGTGGTTG . 186.0 62.0 224.0 0.0 . 308 . . . none . . PASS Atlas-SNP SIL1 64374 hgsc.bcm.edu hg19 5 138378379 138378379 + Missense_Mutation SNP G G T rs55660322 alternate_allele TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . SIL1 NM_001037633 exon6 c.C383A p.S128Y TCCTGAGATGTGT . 62.0 23.0 60.0 0.0 . 31 . . . alt . . PASS Atlas-SNP PCDHGA2 56113 hgsc.bcm.edu hg19 5 140720354 140720354 + Missense_Mutation SNP T T C novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . PCDHGA2 NM_018915 exon1 c.T1816C p.Y606H CTGTCTTACCACC . 67.0 19.0 56.0 0.0 . 205 . . . none . . PASS Atlas-SNP POU4F3 5459 hgsc.bcm.edu hg19 5 145719332 145719332 + Silent SNP C C T novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . POU4F3 NM_002700 exon2 c.C342T p.G114G CCAGGGCCTCGAA . 46.0 21.0 50.0 0.0 . 47 . . . none . . PASS Atlas-SNP DUSP1 1843 hgsc.bcm.edu hg19 5 172196606 172196606 + Silent SNP G G T novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . DUSP1 NM_004417 exon3 c.C705A p.S235S GAACCAGGAGCTG . 53.0 18.0 92.0 0.0 . 27 . . . none . . PASS Atlas-SNP MOG 4340 hgsc.bcm.edu hg19 6 29634002 29634002 + Silent SNP T T G novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . MOG NM_001008229 exon3 c.T510G p.T170T GATCACTGTTGGC . 46.0 20.0 56.0 0.0 . 47 . . . none . . PASS Atlas-SNP LOC554223 0 hgsc.bcm.edu hg19 6 29759857 29759857 + Missense_Mutation SNP G G T novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . . NM_001207043 exon1 c.G73T p.V25F ACCTGTGTCGGGT . 9.0 7.0 10.0 0.0 . . . . . none . . PASS Atlas-SNP MDC1 9656 hgsc.bcm.edu hg19 6 30681674 30681674 + Silent SNP G G C novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . MDC1 NM_014641 exon3 c.C423G p.S141S GCCCCGGGAGACA . 109.0 47.0 144.0 0.0 . 218 . . . none . . PASS Atlas-SNP MAPK14 1432 hgsc.bcm.edu hg19 6 36027090 36027090 + Missense_Mutation SNP A A C novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . MAPK14 NM_139012 exon3 c.A271C p.T91P GTTTTTACACCTG . 21.0 10.0 22.0 0.0 . 75 . . . none . . PASS Atlas-SNP MAPK14 1432 hgsc.bcm.edu hg19 6 36027091 36027091 + Missense_Mutation SNP C C A novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . MAPK14 NM_139012 exon3 c.C272A p.T91K TTTTTACACCTGC . 21.0 10.0 22.0 0.0 . 75 . . . none . . PASS Atlas-SNP ZNF292 23036 hgsc.bcm.edu hg19 6 87967887 87967887 + Missense_Mutation SNP A A G novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . ZNF292 NM_015021 exon8 c.A4540G p.T1514A GTTTCAACAGGTT . 57.0 19.0 104.0 0.0 . 479 . . . none . . PASS Atlas-SNP CASP8AP2 9994 hgsc.bcm.edu hg19 6 90575693 90575693 + Missense_Mutation SNP C C G novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . CASP8AP2 NM_001137667 exon8 c.C2684G p.A895G ATTCAGCTCATTC . 173.0 50.0 199.0 0.0 . 108 . . . none . . PASS Atlas-SNP HOXA7 3204 hgsc.bcm.edu hg19 7 27194784 27194784 + Missense_Mutation SNP T T C novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . HOXA7 NM_006896 exon2 c.A437G p.E146G TCCTTCTCCAGCT . 72.0 23.0 66.0 0.0 . 34 . . . none . . PASS Atlas-SNP PCLO 27445 hgsc.bcm.edu hg19 7 82545774 82545774 + Missense_Mutation SNP C C T novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . PCLO NM_014510 exon7 c.G11528A p.R3843K GTTGGTCTTGTGC . 204.0 42.0 171.0 0.0 . 1506 . . . none . . PASS Atlas-SNP UBN2 254048 hgsc.bcm.edu hg19 7 138943310 138943310 + Missense_Mutation SNP G G T novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . UBN2 NM_173569 exon4 c.G740T p.R247L AGTTTCGCCAAGC . 76.0 38.0 83.0 0.0 . 90 . . . none . . PASS Atlas-SNP GIMAP8 155038 hgsc.bcm.edu hg19 7 150171317 150171317 + Silent SNP C C T novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . GIMAP8 NM_175571 exon4 c.C900T p.I300I TTCGATCATTGAT . 159.0 40.0 118.0 0.0 . 136 . . . none . . PASS Atlas-SNP AGPAT6 137964 hgsc.bcm.edu hg19 8 41476269 41476269 + Silent SNP C C A novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . AGPAT6 NM_178819 exon11 c.C1120A p.R374R CTGCTGCGAATGA . 66.0 25.0 70.0 0.0 . 32 . . . none . . PASS Atlas-SNP OXR1 55074 hgsc.bcm.edu hg19 8 107719085 107719085 + Missense_Mutation SNP A A G novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . OXR1 NM_001198532 exon8 c.A1339G p.N447D AAAGGTAATTCAG . 139.0 59.0 140.0 0.0 . 190 . . . none . . PASS Atlas-SNP FAM83A 84985 hgsc.bcm.edu hg19 8 124195568 124195568 + Missense_Mutation SNP A A C novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . FAM83A NM_032899 exon1 c.A472C p.T158P ACCCGGACTAGCC . 43.0 14.0 50.0 0.0 . 64 . . . none . . PASS Atlas-SNP FAM83A 84985 hgsc.bcm.edu hg19 8 124195569 124195569 + Missense_Mutation SNP C C T novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . FAM83A NM_032899 exon1 c.C473T p.T158I CCCGGACTAGCCA . 45.0 14.0 48.0 0.0 . 64 . . . none . . PASS Atlas-SNP PKN3 29941 hgsc.bcm.edu hg19 9 131477477 131477477 + Missense_Mutation SNP G G A novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b PKN3,colon,carcinoma,0,1 PKN3 NM_013355 exon14 c.G1679A p.R560H ACTTCCGCTGCTT . 108.0 38.0 146.0 0.0 . 62 . . . none . . PASS Atlas-SNP RXRA 6256 hgsc.bcm.edu hg19 9 137325968 137325968 + Missense_Mutation SNP C C T novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . RXRA NM_002957 exon9 c.C1156T p.P386S TCGAACCCGGCCG . 59.0 21.0 46.0 0.0 . 52 . . . none . . PASS Atlas-SNP SVIL 6840 hgsc.bcm.edu hg19 10 29756744 29756744 + Missense_Mutation SNP T T A novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . SVIL NM_021738 exon33 c.A5904T p.E1968D GGAGCCTTCATCA . 66.0 23.0 73.0 0.0 . 226 . . . none . . PASS Atlas-SNP TET1 80312 hgsc.bcm.edu hg19 10 70451029 70451029 + Missense_Mutation SNP A A G rs147755307 TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . TET1 NM_030625 exon12 c.A5869G p.M1957V TCTCCAATGGAAG . 85.0 4.0 102.0 0.0 . 255 . . . weak A|1.000;G|0.000 0.000 PASS Atlas-SNP LRRC20 55222 hgsc.bcm.edu hg19 10 72083705 72083705 + Missense_Mutation SNP G G C novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . LRRC20 NM_207119 exon4 c.C314G p.S105C TTCCGGGACAGGT . 96.0 45.0 98.0 0.0 . 19 . . . none . . PASS Atlas-SNP CDH23 64072 hgsc.bcm.edu hg19 10 73550921 73550921 + Missense_Mutation SNP G G A novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . CDH23 NM_022124 exon45 c.G6082A p.D2028N ATCATTGACCGGG . 38.0 15.0 44.0 0.0 . 365 . . . none . . PASS Atlas-SNP SLC16A12 387700 hgsc.bcm.edu hg19 10 91195920 91195920 + Silent SNP T T A novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . SLC16A12 NM_213606 exon7 c.A1185T p.P395P CACTACTGGGATC . 102.0 37.0 109.0 0.0 . 40 . . . none . . PASS Atlas-SNP SLIT1 6585 hgsc.bcm.edu hg19 10 98803147 98803147 + Silent SNP G G A novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . SLIT1 NM_003061 exon19 c.C1977T p.T659T CTGGAGGGTGTCG . 106.0 36.0 110.0 0.0 . 154 . . . none . . PASS Atlas-SNP TIAL1 7073 hgsc.bcm.edu hg19 10 121339523 121339523 + Splice_Site SNP C C G novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . TIAL1 NM_001033925 exon7 c.423-1G>C . GCATCCCTGTGAA . 63.0 26.0 78.0 0.0 . 47 . . . none . . PASS Atlas-SNP RIC8A 60626 hgsc.bcm.edu hg19 11 209726 209726 + Missense_Mutation SNP A A C novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . RIC8A NM_021932 exon3 c.A452C p.Y151S GGCTGTACCGTGA . 55.0 15.0 63.0 0.0 . 45 . . . none . . PASS Atlas-SNP KCNQ1 3784 hgsc.bcm.edu hg19 11 2799217 2799217 + Missense_Mutation SNP G G C novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . KCNQ1 NM_000218 exon15 c.G1744C p.D582H AGCAAGGATCGCG . 39.0 19.0 39.0 0.0 . 60 . . . none . . PASS Atlas-SNP C11orf58 10944 hgsc.bcm.edu hg19 11 16776551 16776551 + Missense_Mutation SNP T T G novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . C11orf58 NM_014267 exon5 c.T452G p.L151R AAGAACTCCAAGC . 102.0 34.0 148.0 0.0 . 14 . . . none . . PASS Atlas-SNP ARHGAP42 143872 hgsc.bcm.edu hg19 11 100843950 100843950 + Missense_Mutation SNP T T A novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . ARHGAP42 NM_152432 exon18 c.T1595A p.L532H CAAATCTTGGTGT . 68.0 30.0 103.0 0.0 . 32 . . . none . . PASS Atlas-SNP HSPB2 3316 hgsc.bcm.edu hg19 11 111784216 111784216 + Missense_Mutation SNP T T C novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . HSPB2 NM_001541 exon2 c.T146C p.V49A ACTATGTCCGGCC . 27.0 10.0 38.0 0.0 . 20 . . . none . . PASS Atlas-SNP BCL9L 283149 hgsc.bcm.edu hg19 11 118771955 118771955 + Missense_Mutation SNP G G C novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . BCL9L NM_182557 exon6 c.C2497G p.Q833E TCTTCTGCGGGCC . 62.0 20.0 75.0 0.0 . 254 . . . none . . PASS Atlas-SNP ARHGAP32 9743 hgsc.bcm.edu hg19 11 129034246 129034246 + Missense_Mutation SNP G G A novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . ARHGAP32 NM_001142685 exon2 c.C193T p.R65W CAGGCCGCTCTCG . 57.0 14.0 60.0 0.0 . 307 . . . none . . PASS Atlas-SNP TMTC1 83857 hgsc.bcm.edu hg19 12 29908774 29908774 + Missense_Mutation SNP A A G novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b TMTC1,NS,carcinoma,0,1 TMTC1 NM_001193451 exon4 c.T599C p.V200A GGAGACACCGTGG . 172.0 37.0 150.0 0.0 . 147 . . . none . . PASS Atlas-SNP IFNG 3458 hgsc.bcm.edu hg19 12 68552039 68552039 + Missense_Mutation SNP T T G novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . IFNG NM_000619 exon2 c.A115C p.N39H CTGCATTCTAAAA . 63.0 31.0 50.0 0.0 . 38 . . . none . . PASS Atlas-SNP AKAP11 11215 hgsc.bcm.edu hg19 13 42882690 42882690 + Missense_Mutation SNP A A T novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . AKAP11 NM_016248 exon9 c.A5218T p.S1740C AATTTAAGTTTTG . 47.0 26.0 72.0 0.0 . 146 . . . none . . PASS Atlas-SNP TBC1D4 9882 hgsc.bcm.edu hg19 13 75869072 75869072 + Silent SNP G G T novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . TBC1D4 NM_014832 exon18 c.C3234A p.I1078I GGGGCTGATTTCA . 75.0 21.0 117.0 0.0 . 142 . . . none . . PASS Atlas-SNP OXA1L 5018 hgsc.bcm.edu hg19 14 23240288 23240288 + Missense_Mutation SNP G G T novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . OXA1L NM_005015 exon8 c.G1181T p.R394L GTCTCCGGATTCC . 89.0 4.0 120.0 0.0 . 49 . . . none . . PASS Atlas-SNP LRP10 26020 hgsc.bcm.edu hg19 14 23344406 23344406 + Missense_Mutation SNP G G A novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . LRP10 NM_014045 exon4 c.G358A p.G120R TATGCTGGGGCCA . 67.0 14.0 65.0 0.0 . 72 . . . none . . PASS Atlas-SNP LRP10 26020 hgsc.bcm.edu hg19 14 23344686 23344686 + Missense_Mutation SNP G G C novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . LRP10 NM_014045 exon5 c.G529C p.D177H AGCTCAGACCCCT . 83.0 23.0 112.0 0.0 . 72 . . . none . . PASS Atlas-SNP SLC7A8 23428 hgsc.bcm.edu hg19 14 23634563 23634563 + Silent SNP G G A novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . SLC7A8 NM_012244 exon3 c.C439T p.L147L GCTGCAGCACGTA . 67.0 21.0 87.0 0.0 . 54 . . . none . . PASS Atlas-SNP HOMEZ 57594 hgsc.bcm.edu hg19 14 23744802 23744802 + Silent SNP A A G novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . HOMEZ NM_020834 exon2 c.T1635C p.D545D GATCACATCATCA . 115.0 58.0 110.0 0.0 . 80 . . . none . . PASS Atlas-SNP RDH12 145226 hgsc.bcm.edu hg19 14 68192868 68192868 + Missense_Mutation SNP C C A novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . RDH12 NM_152443 exon6 c.C444A p.H148Q CAACCACCTGGGT . 86.0 38.0 90.0 0.0 . 43 . . . none . . PASS Atlas-SNP PPP2R5C 5527 hgsc.bcm.edu hg19 14 102368158 102368158 + Missense_Mutation SNP G G C novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . PPP2R5C NM_001161726 exon11 c.G1120C p.E374Q CCATCAGAATTTG . 90.0 35.0 82.0 0.0 . 74 . . . none . . PASS Atlas-SNP GATM 2628 hgsc.bcm.edu hg19 15 45668863 45668863 + Nonsense_Mutation SNP A A C novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . GATM NM_001482 exon2 c.T224G p.L75X TCCTCTAAGGGGT . 73.0 31.0 57.0 0.0 . 34 . . . none . . PASS Atlas-SNP FGF7 2252 hgsc.bcm.edu hg19 15 49716529 49716529 + Missense_Mutation SNP C C G novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . FGF7 NM_002009 exon2 c.C35G p.T12S TGCCAACTTTGCT . 53.0 22.0 87.0 0.0 . 21 . . . none . . PASS Atlas-SNP C16orf96 342346 hgsc.bcm.edu hg19 16 4628972 4628972 + Silent SNP A A C novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . C16orf96 NM_001145011 exon6 c.A2187C p.T729T CGGGACAACAGTG . 116.0 20.0 100.0 0.0 . 28 . . . none . . PASS Atlas-SNP SETD1A 9739 hgsc.bcm.edu hg19 16 30982956 30982956 + Missense_Mutation SNP G G A novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . SETD1A NM_014712 exon13 c.G3274A p.V1092M GCACCTGTGGAGG . 67.0 14.0 61.0 0.0 . 143 . . . none . . PASS Atlas-SNP NKD1 85407 hgsc.bcm.edu hg19 16 50583410 50583410 + Missense_Mutation SNP G G A novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . NKD1 NM_033119 exon3 c.G136A p.G46S CCGGGCGGTGTCT . 70.0 38.0 52.0 0.0 . 43 . . . none . . PASS Atlas-SNP DDX28 55794 hgsc.bcm.edu hg19 16 68057034 68057034 + Silent SNP G G A novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . DDX28 NM_018380 exon1 c.C72T p.L24L GACCGTGAGGCCC . 25.0 15.0 11.0 0.0 . 29 . . . none . . PASS Atlas-SNP WWP2 11060 hgsc.bcm.edu hg19 16 69820957 69820957 + Missense_Mutation SNP T T A novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . WWP2 NM_001270454 exon2 c.T44A p.F15Y TGCCTTTTGAGAA . 83.0 19.0 73.0 0.0 . 88 . . . none . . PASS Atlas-SNP MINK1 50488 hgsc.bcm.edu hg19 17 4799846 4799846 + Silent SNP T T C rs372981603 alternate_allele TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . MINK1 NM_153827 exon30 c.T3738C p.D1246D TAAGGATGTGGTG . 107.0 34.0 67.0 0.0 . 110 . . . alt . . PASS Atlas-SNP COX10 1352 hgsc.bcm.edu hg19 17 14110151 14110151 + Missense_Mutation SNP T T A novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . COX10 NM_001303 exon7 c.T953A p.L318H GAATCCTCTACTC . 91.0 45.0 66.0 0.0 . 36 . . . none . . PASS Atlas-SNP FLII 2314 hgsc.bcm.edu hg19 17 18151250 18151250 + Missense_Mutation SNP A A G novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . FLII NM_002018 exon19 c.T2288C p.M763T AGCCGCATTCTTG . 78.0 39.0 78.0 0.0 . 79 . . . none . . PASS Atlas-SNP TRIM65 201292 hgsc.bcm.edu hg19 17 73887171 73887171 + Missense_Mutation SNP T T A novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . TRIM65 NM_173547 exon6 c.A1243T p.N415Y CAATGTTGTCTGT . 20.0 8.0 23.0 0.0 . 23 . . . none . . PASS Atlas-SNP CBX4 8535 hgsc.bcm.edu hg19 17 77807927 77807927 + Missense_Mutation SNP A A G rs200965379 TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b CBX4,uveal_tract,malignant_melanoma,0,1 CBX4 NM_003655 exon5 c.T1514C p.V505A GCCGCCACCGCCA . 44.0 6.0 44.0 1.0 . 40 . . . weak . . PASS Atlas-SNP SLC25A52 147407 hgsc.bcm.edu hg19 18 29340393 29340393 + Nonsense_Mutation SNP G G A novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . . NM_001034172 exon1 c.C262T p.R88X AATTTCGAAATCC . 118.0 36.0 132.0 0.0 . . . . . none . . PASS Atlas-SNP CACNA1A 773 hgsc.bcm.edu hg19 19 13372413 13372413 + Silent SNP G G A novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . CACNA1A NM_001127221 exon26 c.C4104T p.D1368D CACACAGTCAAAC . 68.0 27.0 51.0 0.0 . 715 . . . none . . PASS Atlas-SNP ARHGAP33 115703 hgsc.bcm.edu hg19 19 36279024 36279024 + Missense_Mutation SNP C C T novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . ARHGAP33 NM_052948 exon21 c.C3074T p.S1025F CCTCCTCCTCTTC . 114.0 36.0 168.0 0.0 . 102 . . . none . . PASS Atlas-SNP SARS2 54938 hgsc.bcm.edu hg19 19 39409424 39409424 + Silent SNP A A G novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . SARS2 NM_001145901 exon9 c.T795C p.L265L GCGGAGAAGGTCT . 40.0 14.0 71.0 0.0 . 33 . . . none . . PASS Atlas-SNP DKKL1 27120 hgsc.bcm.edu hg19 19 49868766 49868766 + Missense_Mutation SNP G G T novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . DKKL1 NM_014419 exon3 c.G184T p.G62C CCCCAGGGTAACC . 35.0 11.0 55.0 0.0 . 23 . . . none . . PASS Atlas-SNP CASS4 57091 hgsc.bcm.edu hg19 20 55026927 55026927 + Missense_Mutation SNP G G T novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . CASS4 NM_020356 exon5 c.G695T p.S232I GTTACAGCACATT . 195.0 47.0 184.0 0.0 . 121 . . . none . . PASS Atlas-SNP LSM14B 149986 hgsc.bcm.edu hg19 20 60704972 60704972 + Missense_Mutation SNP G G C rs139247673 bycluster;by1000genomes;alternate_allele TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . LSM14B NM_144703 exon4 c.G559C p.G187R CTCAACGGTCGTC . 139.0 32.0 115.0 0.0 . 62 . . . alt G|0.990;A|0.010 . PASS Atlas-SNP COL6A2 1292 hgsc.bcm.edu hg19 21 47544599 47544599 + Missense_Mutation SNP G G T rs147158850 bycluster;by1000genomes;alternate_allele TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . COL6A2 NM_058175 exon22 c.G1706T p.R569L GCCCTCGGGGGCC . 72.0 28.0 110.0 0.0 . 351 . . . alt G|0.999;A|0.001 . PASS Atlas-SNP SHANK3 85358 hgsc.bcm.edu hg19 22 51160753 51160753 + Missense_Mutation SNP A A T novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . SHANK3 NM_033517 exon21 c.A4450T p.S1484C GAGCTCAGCTCCC . 148.0 53.0 182.0 0.0 . 96 . . . none . . PASS Atlas-SNP ND1 10625 hgsc.bcm.edu hg19 MT 3791 3791 + Missense_Mutation SNP T T C novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . . ENST00000361390 exon1 c.T485C p.L162P TTAACCTCTCCAC . 51.0 48.0 8.0 0.0 . . . . . none . . PASS Atlas-SNP APLF 200558 hgsc.bcm.edu hg19 2 68740321 68740322 + Frame_Shift_Ins INS - - A novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . APLF NM_173545 exon4 c.451_452insA p.E151fs . . 127.0 35.0 113.0 0.0 . 69 . 0.275591 0 none . . PASS Atlas-Indel,Pindel HSD17B1 3292 hgsc.bcm.edu hg19 17 40706580 40706580 + Frame_Shift_Del DEL A A - novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . HSD17B1 NM_000413 exon5 c.696delG p.Q232fs . . 80.0 18.0 68.0 0.0 . 24 . 0.225 0 none . . PASS Atlas-Indel,Pindel TRPM1 4308 hgsc.bcm.edu hg19 15 31294200 31294200 + Frame_Shift_Del DEL G G - novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . TRPM1 NM_001252020 exon27 c.4755delA p.P1585fs . . 74.0 20.0 84.0 0.0 . 183 . 0.27027 0 none . . PASS Atlas-Indel,Pindel TTN 7273 hgsc.bcm.edu hg19 2 179398278 179398278 + Frame_Shift_Del DEL G G - novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . TTN NM_001267550 exon358 c.103065delT p.P34355fs . . 90.0 52.0 83.0 0.0 . 18412 . 0.577778 0 none . . PASS Atlas-Indel,Pindel PPIL1 51645 hgsc.bcm.edu hg19 6 36823708 36823708 + Frame_Shift_Del DEL T T - novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . PPIL1 NM_016059 exon4 c.383delT p.I128fs . . 78.0 27.0 106.0 0.0 . 6 . 0.346154 0 none . . PASS Atlas-Indel,Pindel AGO2 27161 hgsc.bcm.edu hg19 8 141554392 141554393 + Frame_Shift_Del DEL AC AC - novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 AC AC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . . NM_012154 exon14 c.1759_1760del p.587_587del . . 38.0 12.0 42.0 0.0 . . . 0.315789 0 none . . PASS Atlas-Indel,Pindel SPDL1 54908 hgsc.bcm.edu hg19 5 169018070 169018071 + Frame_Shift_Ins INS - - G novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . . NM_017785 exon3 c.178_179insG p.Y60_T61delinsX . . 146.0 59.0 194.0 0.0 . . . 0.40411 0 none . . PASS Atlas-Indel,Pindel RSF1 51773 hgsc.bcm.edu hg19 11 77378053 77378054 + Frame_Shift_Ins INS - - CA novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . RSF1 NM_016578 exon16 c.4235_4236insTG p.G1412fs . . 103.0 30.0 76.0 0.0 . 105 . 0.291262 0 none . . PASS Atlas-Indel,Pindel NEFH 4744 hgsc.bcm.edu hg19 22 29885584 29885585 + In_Frame_Ins INS - - CAAGTCCCCTGAGAAGGC novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b .,1 NEFH NM_021076 exon4 c.1955_1956insCAAGTCCCCTGAGAAGGC p.A652delinsAKSPEKA . . 158.0 39.0 138.0 0.0 . 178 . 0.246835 0 none . . PASS Atlas-INDEL KCNT2 343450 hgsc.bcm.edu hg19 1 196303029 196303029 + Frame_Shift_Del DEL C C - novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . KCNT2 NM_198503 exon17 c.1946delA p.D649fs . . 55.0 21.0 68.0 0.0 . 243 . 0.381818 0 none . . PASS Atlas-Indel,Pindel CTAGE1 64693 hgsc.bcm.edu hg19 18 19995661 19995661 + Frame_Shift_Del DEL G G - novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . CTAGE1 NM_172241 exon1 c.2115delT p.S705fs . . 109.0 33.0 114.0 0.0 . 146 . 0.302752 0 none . . PASS Atlas-Indel,Pindel USP14 9097 hgsc.bcm.edu hg19 18 192871 192871 + Frame_Shift_Del DEL A A - novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . USP14 NM_005151 exon6 c.433delG p.E145fs . . 77.0 34.0 79.0 0.0 . 41 . 0.441558 0 none . . PASS Atlas-Indel,Pindel OBSCN 84033 hgsc.bcm.edu hg19 1 228521014 228521017 + Frame_Shift_Del DEL CAAG CAAG - novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 CAAG CAAG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . OBSCN NM_001271223 exon69 c.18716_18719del p.6239_6240del . . 81.0 34.0 99.0 0.0 . 2142 . 0.419753 0 none . . PASS Atlas-Indel,Pindel MAGEC1 9947 hgsc.bcm.edu hg19 X 140993981 140994085 + In_Frame_Del DEL CCCAGTCTTCTCTCCAGATTCCTGTGAGCCCCTCCTTCTCCTCCACTTTAGTGAGTCTTTTCCAGAGTTCCCCTGAGAGAACTCAGAGTACTTTTGAGGGTTTTC CCCAGTCTTCTCTCCAGATTCCTGTGAGCCCCTCCTTCTCCTCCACTTTAGTGAGTCTTTTCCAGAGTTCCCCTGAGAGAACTCAGAGTACTTTTGAGGGTTTTC - novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 CCCAGTCTTCTCTCCAGATTCCTGTGAGCCCCTCCTTCTCCTCCACTTTAGTGAGTCTTTTCCAGAGTTCCCCTGAGAGAACTCAGAGTACTTTTGAGGGTTTTC CCCAGTCTTCTCTCCAGATTCCTGTGAGCCCCTCCTTCTCCTCCACTTTAGTGAGTCTTTTCCAGAGTTCCCCTGAGAGAACTCAGAGTACTTTTGAGGGTTTTC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . MAGEC1 NM_005462 exon4 c.790_894del p.264_298del . . 251.0 19.0 273.0 0.0 . 317 . 0.076 . none . . PASS Pindel CR1 1378 hgsc.bcm.edu hg19 1 207734400 207734405 + In_Frame_Del DEL TGGCTT TGGCTT - novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 TGGCTT TGGCTT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . CR1 NM_000651 exon21 c.3503_3508del p.1168_1170del . . 119.0 20.0 174.0 0.0 . 354 . 0.168 . none . . PASS Pindel CR1 1378 hgsc.bcm.edu hg19 1 207715843 207715848 + In_Frame_Del DEL TGGCTT TGGCTT - novel TCGA-SX-A71V-01A-11D-A33Q-10 TCGA-SX-A71V-10A-01D-A33Q-10 TGGCTT TGGCTT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7879708e-a807-4002-9d4d-efc84d51a4e5 af4acae0-89a6-4004-ad5b-149db143f98b . CR1 NM_000651 exon13 c.2153_2158del p.718_720del . . 140.0 16.0 194.0 0.0 . 354 . 0.114 . none . . PASS Pindel