Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
CLIC4	25932	hgsc.bcm.edu	hg19	1	25140695	25140695	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9PJ-01A-11D-A382-10	TCGA-UZ-A9PJ-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	beb8581d-8471-4411-9521-4bf057f7d14a	b67bfe0e-ad19-4c1c-a9f3-cee65c1fee86	.	CLIC4	NM_013943	exon3	c.T293C	p.V98A	AAGAAGTCTTATG	.	163.0	75.0	180.0	0.0	.	20	.	.	.	none	.	.	PASS	Atlas-SNP
ACADM	34	hgsc.bcm.edu	hg19	1	76211529	76211529	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UZ-A9PJ-01A-11D-A382-10	TCGA-UZ-A9PJ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	beb8581d-8471-4411-9521-4bf057f7d14a	b67bfe0e-ad19-4c1c-a9f3-cee65c1fee86	ACADM,NS,carcinoma,0,1	ACADM	NM_001127328	exon8	c.C650T	p.A217V	CTAAAGCTCCTGC	.	65.0	30.0	49.0	0.0	.	50	.	.	.	none	.	.	PASS	Atlas-SNP
BCAR3	8412	hgsc.bcm.edu	hg19	1	94054942	94054942	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9PJ-01A-11D-A382-10	TCGA-UZ-A9PJ-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	beb8581d-8471-4411-9521-4bf057f7d14a	b67bfe0e-ad19-4c1c-a9f3-cee65c1fee86	.	BCAR3	NM_001261409	exon5	c.T521C	p.F174S	ACTAGGAAGTCAC	.	36.0	14.0	31.0	0.0	.	62	.	.	.	none	.	.	PASS	Atlas-SNP
CELSR2	1952	hgsc.bcm.edu	hg19	1	109794683	109794683	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9PJ-01A-11D-A382-10	TCGA-UZ-A9PJ-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	beb8581d-8471-4411-9521-4bf057f7d14a	b67bfe0e-ad19-4c1c-a9f3-cee65c1fee86	.	CELSR2	NM_001408	exon1	c.A1982G	p.Q661R	CCAGCCAAAGTGG	.	70.0	32.0	72.0	0.0	.	228	.	.	.	none	.	.	PASS	Atlas-SNP
CTTNBP2NL	55917	hgsc.bcm.edu	hg19	1	112999757	112999757	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9PJ-01A-11D-A382-10	TCGA-UZ-A9PJ-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	beb8581d-8471-4411-9521-4bf057f7d14a	b67bfe0e-ad19-4c1c-a9f3-cee65c1fee86	.	CTTNBP2NL	NM_018704	exon6	c.A1643G	p.H548R	CAAGCCATTCACC	.	119.0	57.0	135.0	0.0	.	65	.	.	.	none	.	.	PASS	Atlas-SNP
DHX9	1660	hgsc.bcm.edu	hg19	1	182822459	182822459	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PJ-01A-11D-A382-10	TCGA-UZ-A9PJ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	beb8581d-8471-4411-9521-4bf057f7d14a	b67bfe0e-ad19-4c1c-a9f3-cee65c1fee86	.	DHX9	NM_001357	exon5	c.G383A	p.G128E	AGGTAGGGGCCTC	.	223.0	121.0	224.0	0.0	.	114	.	.	.	none	.	.	PASS	Atlas-SNP
DNMT3A	1788	hgsc.bcm.edu	hg19	2	25461998	25461998	+	Splice_Site	SNP	C	C	A	novel		TCGA-UZ-A9PJ-01A-11D-A382-10	TCGA-UZ-A9PJ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	beb8581d-8471-4411-9521-4bf057f7d14a	b67bfe0e-ad19-4c1c-a9f3-cee65c1fee86	.	DNMT3A	NM_153759	exon17	c.1841+1G>T	.	CACCAACCTGTTC	.	73.0	36.0	75.0	0.0	.	1807	.	.	.	none	.	.	PASS	Atlas-SNP
TANK	10010	hgsc.bcm.edu	hg19	2	162087645	162087645	+	Silent	SNP	A	A	G	novel		TCGA-UZ-A9PJ-01A-11D-A382-10	TCGA-UZ-A9PJ-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	beb8581d-8471-4411-9521-4bf057f7d14a	b67bfe0e-ad19-4c1c-a9f3-cee65c1fee86	.	TANK	NM_004180	exon7	c.A684G	p.S228S	TGAATCACTTTCT	.	194.0	99.0	185.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
CDCA7	83879	hgsc.bcm.edu	hg19	2	174230206	174230206	+	Silent	SNP	C	C	G	novel		TCGA-UZ-A9PJ-01A-11D-A382-10	TCGA-UZ-A9PJ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	beb8581d-8471-4411-9521-4bf057f7d14a	b67bfe0e-ad19-4c1c-a9f3-cee65c1fee86	.	CDCA7	NM_031942	exon7	c.C921G	p.R307R	CCGTCGCTCCAGA	.	83.0	39.0	78.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179469796	179469796	+	Silent	SNP	G	G	A	novel		TCGA-UZ-A9PJ-01A-11D-A382-10	TCGA-UZ-A9PJ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	beb8581d-8471-4411-9521-4bf057f7d14a	b67bfe0e-ad19-4c1c-a9f3-cee65c1fee86	.	TTN	NM_001267550	exon280	c.C54108T	p.V18036V	CTCCCGGACCGCT	.	57.0	27.0	72.0	0.0	.	18412	.	.	.	none	.	.	PASS	Atlas-SNP
MARCH4	57574	hgsc.bcm.edu	hg19	2	217124358	217124358	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PJ-01A-11D-A382-10	TCGA-UZ-A9PJ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	beb8581d-8471-4411-9521-4bf057f7d14a	b67bfe0e-ad19-4c1c-a9f3-cee65c1fee86	.	MARCH4	NM_020814	exon4	c.C910T	p.R304W	GCCACCGTTTAAA	.	68.0	37.0	60.0	0.0	.	50	.	.	.	none	.	.	PASS	Atlas-SNP
RBM15B	29890	hgsc.bcm.edu	hg19	3	51431303	51431303	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UZ-A9PJ-01A-11D-A382-10	TCGA-UZ-A9PJ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	beb8581d-8471-4411-9521-4bf057f7d14a	b67bfe0e-ad19-4c1c-a9f3-cee65c1fee86	.	RBM15B	NM_013286	exon1	c.G2473T	p.V825F	AACCTGGTCTCCT	.	85.0	40.0	75.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
ERC2	26059	hgsc.bcm.edu	hg19	3	55768837	55768837	+	Missense_Mutation	SNP	G	G	A	rs367719934	alternate_allele	TCGA-UZ-A9PJ-01A-11D-A382-10	TCGA-UZ-A9PJ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	beb8581d-8471-4411-9521-4bf057f7d14a	b67bfe0e-ad19-4c1c-a9f3-cee65c1fee86	.	ERC2	NM_015576	exon14	c.C2668T	p.R890W	TTTCCCGCTTGAG	.	98.0	39.0	95.0	0.0	.	221	.	.	.	alt	.	.	PASS	Atlas-SNP
POLN	353497	hgsc.bcm.edu	hg19	4	2087397	2087397	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UZ-A9PJ-01A-11D-A382-10	TCGA-UZ-A9PJ-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	beb8581d-8471-4411-9521-4bf057f7d14a	b67bfe0e-ad19-4c1c-a9f3-cee65c1fee86	.	POLN	NM_181808	exon19	c.A2140C	p.K714Q	TGTACTTCTGCAA	.	60.0	25.0	65.0	0.0	.	82	.	.	.	none	.	.	PASS	Atlas-SNP
TRMT44	152992	hgsc.bcm.edu	hg19	4	8469719	8469719	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UZ-A9PJ-01A-11D-A382-10	TCGA-UZ-A9PJ-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	beb8581d-8471-4411-9521-4bf057f7d14a	b67bfe0e-ad19-4c1c-a9f3-cee65c1fee86	.	TRMT44	NM_152544	exon9	c.A1573C	p.K525Q	TACATTAAGAGCA	.	137.0	67.0	191.0	0.0	.	7	.	.	.	none	.	.	PASS	Atlas-SNP
FASTKD3	79072	hgsc.bcm.edu	hg19	5	7867537	7867537	+	Silent	SNP	A	A	G	novel		TCGA-UZ-A9PJ-01A-11D-A382-10	TCGA-UZ-A9PJ-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	beb8581d-8471-4411-9521-4bf057f7d14a	b67bfe0e-ad19-4c1c-a9f3-cee65c1fee86	.	FASTKD3	NM_024091	exon2	c.T660C	p.I220I	CCCAAGAATACAA	.	89.0	45.0	83.0	0.0	.	88	.	.	.	none	.	.	PASS	Atlas-SNP
SMIM15	643155	hgsc.bcm.edu	hg19	5	60455870	60455870	+	Silent	SNP	T	T	C	rs140323722		TCGA-UZ-A9PJ-01A-11D-A382-10	TCGA-UZ-A9PJ-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	beb8581d-8471-4411-9521-4bf057f7d14a	b67bfe0e-ad19-4c1c-a9f3-cee65c1fee86	.	.	NM_001048249	exon3	c.A129G	p.K43K	GGCCAATTTCCAA	.	74.0	33.0	80.0	0.0	.	.	.	.	.	weak	T|1.000;C|0.000	0.000	PASS	Atlas-SNP
SPDL1	54908	hgsc.bcm.edu	hg19	5	169026069	169026069	+	Silent	SNP	T	T	G	novel		TCGA-UZ-A9PJ-01A-11D-A382-10	TCGA-UZ-A9PJ-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	beb8581d-8471-4411-9521-4bf057f7d14a	b67bfe0e-ad19-4c1c-a9f3-cee65c1fee86	.	.	NM_017785	exon10	c.T1230G	p.L410L	AAAACTTTTTGCA	.	255.0	124.0	243.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
CANX	821	hgsc.bcm.edu	hg19	5	179132798	179132798	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UZ-A9PJ-01A-11D-A382-10	TCGA-UZ-A9PJ-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	beb8581d-8471-4411-9521-4bf057f7d14a	b67bfe0e-ad19-4c1c-a9f3-cee65c1fee86	.	CANX	NM_001746	exon2	c.T116G	p.I39S	ATGTCATTGAAGA	.	66.0	26.0	71.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
GFPT2	9945	hgsc.bcm.edu	hg19	5	179758509	179758509	+	Silent	SNP	G	G	A	novel		TCGA-UZ-A9PJ-01A-11D-A382-10	TCGA-UZ-A9PJ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	beb8581d-8471-4411-9521-4bf057f7d14a	b67bfe0e-ad19-4c1c-a9f3-cee65c1fee86	.	GFPT2	NM_005110	exon5	c.C385T	p.L129L	TCCTCAGATCTTT	.	94.0	45.0	81.0	0.0	.	74	.	.	.	none	.	.	PASS	Atlas-SNP
HLA-G	3135	hgsc.bcm.edu	hg19	6	29797430	29797430	+	Silent	SNP	G	G	T	novel		TCGA-UZ-A9PJ-01A-11D-A382-10	TCGA-UZ-A9PJ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	beb8581d-8471-4411-9521-4bf057f7d14a	b67bfe0e-ad19-4c1c-a9f3-cee65c1fee86	.	HLA-G	NM_002127	exon5	c.G855T	p.V285V	CCATGTGCAGCAT	.	94.0	6.0	66.0	0.0	.	90	.	.	.	none	.	.	PASS	Atlas-SNP
CRIP3	401262	hgsc.bcm.edu	hg19	6	43275411	43275411	+	Silent	SNP	A	A	G	novel		TCGA-UZ-A9PJ-01A-11D-A382-10	TCGA-UZ-A9PJ-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	beb8581d-8471-4411-9521-4bf057f7d14a	b67bfe0e-ad19-4c1c-a9f3-cee65c1fee86	.	CRIP3	NM_206922	exon4	c.T267C	p.P89P	GCTGAGAGGAGTG	.	86.0	40.0	89.0	0.0	.	30	.	.	.	none	.	.	PASS	Atlas-SNP
IGF2R	3482	hgsc.bcm.edu	hg19	6	160467612	160467612	+	Silent	SNP	T	T	C	novel		TCGA-UZ-A9PJ-01A-11D-A382-10	TCGA-UZ-A9PJ-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	beb8581d-8471-4411-9521-4bf057f7d14a	b67bfe0e-ad19-4c1c-a9f3-cee65c1fee86	.	IGF2R	NM_000876	exon15	c.T1986C	p.N662N	TATAAATGTGTGT	.	65.0	25.0	65.0	0.0	.	251	.	.	.	none	.	.	PASS	Atlas-SNP
PHF10	55274	hgsc.bcm.edu	hg19	6	170112545	170112545	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UZ-A9PJ-01A-11D-A382-10	TCGA-UZ-A9PJ-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	beb8581d-8471-4411-9521-4bf057f7d14a	b67bfe0e-ad19-4c1c-a9f3-cee65c1fee86	.	PHF10	NM_018288	exon8	c.T894A	p.D298E	ATCACCATCACTG	.	151.0	74.0	161.0	0.0	.	76	.	.	.	none	.	.	PASS	Atlas-SNP
MET	4233	hgsc.bcm.edu	hg19	7	116417457	116417457	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PJ-01A-11D-A382-10	TCGA-UZ-A9PJ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	beb8581d-8471-4411-9521-4bf057f7d14a	b67bfe0e-ad19-4c1c-a9f3-cee65c1fee86	.	MET	NM_001127500	exon16	c.G3328A	p.V1110I	GGTTGTGTATATC	.	151.0	55.0	82.0	0.0	.	412	.	.	.	none	.	.	PASS	Atlas-SNP
NUP205	23165	hgsc.bcm.edu	hg19	7	135255937	135255937	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UZ-A9PJ-01A-11D-A382-10	TCGA-UZ-A9PJ-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	beb8581d-8471-4411-9521-4bf057f7d14a	b67bfe0e-ad19-4c1c-a9f3-cee65c1fee86	.	NUP205	NM_015135	exon2	c.T113G	p.L38R	TTCACCTTCTTGA	.	522.0	160.0	362.0	0.0	.	198	.	.	.	none	.	.	PASS	Atlas-SNP
POLB	5423	hgsc.bcm.edu	hg19	8	42218840	42218840	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9PJ-01A-11D-A382-10	TCGA-UZ-A9PJ-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	beb8581d-8471-4411-9521-4bf057f7d14a	b67bfe0e-ad19-4c1c-a9f3-cee65c1fee86	.	POLB	NM_002690	exon10	c.T578C	p.V193A	TGGATGTTCTCCT	.	61.0	24.0	89.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
ZFHX4	79776	hgsc.bcm.edu	hg19	8	77775575	77775575	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PJ-01A-11D-A382-10	TCGA-UZ-A9PJ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	beb8581d-8471-4411-9521-4bf057f7d14a	b67bfe0e-ad19-4c1c-a9f3-cee65c1fee86	.	ZFHX4	NM_024721	exon11	c.G9625A	p.A3209T	TTAGAGGCCACCA	.	124.0	44.0	164.0	0.0	.	878	.	.	.	none	.	.	PASS	Atlas-SNP
HRSP12	10247	hgsc.bcm.edu	hg19	8	99118223	99118223	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9PJ-01A-11D-A382-10	TCGA-UZ-A9PJ-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	beb8581d-8471-4411-9521-4bf057f7d14a	b67bfe0e-ad19-4c1c-a9f3-cee65c1fee86	.	HRSP12	NM_005836	exon4	c.A238G	p.T80A	GAACAGTTGTTTT	.	69.0	41.0	89.0	0.0	.	13	.	.	.	none	.	.	PASS	Atlas-SNP
RIMS2	9699	hgsc.bcm.edu	hg19	8	104924308	104924308	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PJ-01A-11D-A382-10	TCGA-UZ-A9PJ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	beb8581d-8471-4411-9521-4bf057f7d14a	b67bfe0e-ad19-4c1c-a9f3-cee65c1fee86	.	RIMS2	NM_001100117	exon6	c.G1720A	p.D574N	TCTAAAGATGGAG	.	80.0	37.0	100.0	0.0	.	1357	.	.	.	none	.	.	PASS	Atlas-SNP
STX17	55014	hgsc.bcm.edu	hg19	9	102691077	102691077	+	Silent	SNP	C	C	A	novel		TCGA-UZ-A9PJ-01A-11D-A382-10	TCGA-UZ-A9PJ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	beb8581d-8471-4411-9521-4bf057f7d14a	b67bfe0e-ad19-4c1c-a9f3-cee65c1fee86	.	STX17	NM_017919	exon3	c.C141A	p.I47I	CAGAATCTGGGAC	.	65.0	35.0	93.0	0.0	.	17	.	.	.	none	.	.	PASS	Atlas-SNP
RABL6	55684	hgsc.bcm.edu	hg19	9	139730244	139730244	+	Silent	SNP	C	C	T	novel		TCGA-UZ-A9PJ-01A-11D-A382-10	TCGA-UZ-A9PJ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	beb8581d-8471-4411-9521-4bf057f7d14a	b67bfe0e-ad19-4c1c-a9f3-cee65c1fee86	.	.	NM_001173988	exon8	c.C759T	p.A253A	GGACGCCACGCTG	.	157.0	73.0	173.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
IPO7	10527	hgsc.bcm.edu	hg19	11	9430091	9430091	+	Silent	SNP	A	A	C	novel		TCGA-UZ-A9PJ-01A-11D-A382-10	TCGA-UZ-A9PJ-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	beb8581d-8471-4411-9521-4bf057f7d14a	b67bfe0e-ad19-4c1c-a9f3-cee65c1fee86	.	IPO7	NM_006391	exon3	c.A225C	p.P75P	AGCACCAGGGGAT	.	86.0	39.0	81.0	0.0	.	72	.	.	.	none	.	.	PASS	Atlas-SNP
RBP5	83758	hgsc.bcm.edu	hg19	12	7280907	7280907	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9PJ-01A-11D-A382-10	TCGA-UZ-A9PJ-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	beb8581d-8471-4411-9521-4bf057f7d14a	b67bfe0e-ad19-4c1c-a9f3-cee65c1fee86	.	RBP5	NM_031491	exon2	c.T181C	p.Y61H	CAGTGTAGTTTCG	.	116.0	59.0	119.0	0.0	.	20	.	.	.	none	.	.	PASS	Atlas-SNP
C12orf74	338809	hgsc.bcm.edu	hg19	12	93100476	93100476	+	Silent	SNP	G	G	A	novel		TCGA-UZ-A9PJ-01A-11D-A382-10	TCGA-UZ-A9PJ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	beb8581d-8471-4411-9521-4bf057f7d14a	b67bfe0e-ad19-4c1c-a9f3-cee65c1fee86	.	C12orf74	NM_001037671	exon2	c.G69A	p.S23S	GCCCTCGCTGAGG	.	62.0	31.0	46.0	0.0	.	17	.	.	.	none	.	.	PASS	Atlas-SNP
GJA3	2700	hgsc.bcm.edu	hg19	13	20716205	20716205	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PJ-01A-11D-A382-10	TCGA-UZ-A9PJ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	beb8581d-8471-4411-9521-4bf057f7d14a	b67bfe0e-ad19-4c1c-a9f3-cee65c1fee86	.	GJA3	NM_021954	exon2	c.C1223T	p.P408L	GGCAAGGGCGGCT	.	102.0	50.0	105.0	0.0	.	32	.	.	.	none	.	.	PASS	Atlas-SNP
INTS6	26512	hgsc.bcm.edu	hg19	13	51961636	51961636	+	Silent	SNP	A	A	G	novel		TCGA-UZ-A9PJ-01A-11D-A382-10	TCGA-UZ-A9PJ-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	beb8581d-8471-4411-9521-4bf057f7d14a	b67bfe0e-ad19-4c1c-a9f3-cee65c1fee86	.	INTS6	NM_012141	exon7	c.T780C	p.P260P	ATGCCAAGGCTGA	.	34.0	12.0	37.0	0.0	.	72	.	.	.	none	.	.	PASS	Atlas-SNP
ACOT2	10965	hgsc.bcm.edu	hg19	14	74036423	74036423	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9PJ-01A-11D-A382-10	TCGA-UZ-A9PJ-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	beb8581d-8471-4411-9521-4bf057f7d14a	b67bfe0e-ad19-4c1c-a9f3-cee65c1fee86	.	ACOT2	NM_006821	exon1	c.T479C	p.V160A	GCGACGTGCGAAC	.	137.0	49.0	161.0	0.0	.	24	.	.	.	none	.	.	PASS	Atlas-SNP
KAT8	84148	hgsc.bcm.edu	hg19	16	31131564	31131564	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9PJ-01A-11D-A382-10	TCGA-UZ-A9PJ-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	beb8581d-8471-4411-9521-4bf057f7d14a	b67bfe0e-ad19-4c1c-a9f3-cee65c1fee86	MYST1,rectum,NS,+1,1	.	NM_182958	exon2	c.A269G	p.Y90C	AATTCTATGTACA	.	118.0	51.0	145.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
LRRC36	55282	hgsc.bcm.edu	hg19	16	67384190	67384190	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9PJ-01A-11D-A382-10	TCGA-UZ-A9PJ-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	beb8581d-8471-4411-9521-4bf057f7d14a	b67bfe0e-ad19-4c1c-a9f3-cee65c1fee86	.	LRRC36	NM_018296	exon5	c.A574G	p.M192V	ATTGAAATGGGTA	.	89.0	43.0	84.0	0.0	.	68	.	.	.	none	.	.	PASS	Atlas-SNP
SPIRE2	84501	hgsc.bcm.edu	hg19	16	89920723	89920723	+	Silent	SNP	G	G	T	rs148030912	alternate_allele	TCGA-UZ-A9PJ-01A-11D-A382-10	TCGA-UZ-A9PJ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	beb8581d-8471-4411-9521-4bf057f7d14a	b67bfe0e-ad19-4c1c-a9f3-cee65c1fee86	SPIRE2,caecum,carcinoma,0,1	SPIRE2	NM_032451	exon4	c.G675T	p.P225P	CGAGCCGCATCTG	.	94.0	46.0	109.0	0.0	.	63	.	.	.	alt	G|1.000;A|0.000	.	PASS	Atlas-SNP
CLUH	23277	hgsc.bcm.edu	hg19	17	2594073	2594073	+	Splice_Site	SNP	T	T	C	novel		TCGA-UZ-A9PJ-01A-11D-A382-10	TCGA-UZ-A9PJ-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	beb8581d-8471-4411-9521-4bf057f7d14a	b67bfe0e-ad19-4c1c-a9f3-cee65c1fee86	.	.	NM_015229	exon27	c.3747-2A>G	.	TTTGGCTGAGGAT	.	40.0	21.0	36.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
SYNRG	11276	hgsc.bcm.edu	hg19	17	35969394	35969394	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PJ-01A-11D-A382-10	TCGA-UZ-A9PJ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	beb8581d-8471-4411-9521-4bf057f7d14a	b67bfe0e-ad19-4c1c-a9f3-cee65c1fee86	.	SYNRG	NM_001163544	exon1	c.C10T	p.R4W	CTGGCCGCAGCGC	.	42.0	26.0	27.0	0.0	.	101	.	.	.	none	.	.	PASS	Atlas-SNP
SPATA20	64847	hgsc.bcm.edu	hg19	17	48626272	48626272	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PJ-01A-11D-A382-10	TCGA-UZ-A9PJ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	beb8581d-8471-4411-9521-4bf057f7d14a	b67bfe0e-ad19-4c1c-a9f3-cee65c1fee86	.	SPATA20	NM_022827	exon5	c.G463A	p.V155I	GTGAAGGTAGACC	.	100.0	67.0	91.0	0.0	.	59	.	.	.	none	.	.	PASS	Atlas-SNP
ADAMTS10	81794	hgsc.bcm.edu	hg19	19	8654145	8654145	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UZ-A9PJ-01A-11D-A382-10	TCGA-UZ-A9PJ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	beb8581d-8471-4411-9521-4bf057f7d14a	b67bfe0e-ad19-4c1c-a9f3-cee65c1fee86	.	ADAMTS10	NM_030957	exon18	c.C2139G	p.S713R	GGCTGGGCTGAAG	.	51.0	21.0	95.0	0.0	.	132	.	.	.	none	.	.	PASS	Atlas-SNP
UPF1	5976	hgsc.bcm.edu	hg19	19	18964067	18964067	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PJ-01A-11D-A382-10	TCGA-UZ-A9PJ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	beb8581d-8471-4411-9521-4bf057f7d14a	b67bfe0e-ad19-4c1c-a9f3-cee65c1fee86	.	UPF1	NM_002911	exon8	c.G1064A	p.R355Q	ACATGCGGCTCAT	.	93.0	48.0	96.0	0.0	.	88	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF729	100287226	hgsc.bcm.edu	hg19	19	22499586	22499586	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9PJ-01A-11D-A382-10	TCGA-UZ-A9PJ-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	beb8581d-8471-4411-9521-4bf057f7d14a	b67bfe0e-ad19-4c1c-a9f3-cee65c1fee86	.	ZNF729	NM_001242680	exon4	c.A3367G	p.K1123E	AAACATAAGATAA	.	27.0	8.0	30.0	0.0	.	78	.	.	.	none	.	.	PASS	Atlas-SNP
EXOSC5	56915	hgsc.bcm.edu	hg19	19	41898792	41898792	+	Missense_Mutation	SNP	C	C	A	rs370634546	alternate_allele	TCGA-UZ-A9PJ-01A-11D-A382-10	TCGA-UZ-A9PJ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	beb8581d-8471-4411-9521-4bf057f7d14a	b67bfe0e-ad19-4c1c-a9f3-cee65c1fee86	.	EXOSC5	NM_020158	exon2	c.G242T	p.R81M	TTCGGCCTCAGGA	.	65.0	5.0	83.0	0.0	.	18	.	.	.	alt	.	.	PASS	Atlas-SNP
NLRP13	126204	hgsc.bcm.edu	hg19	19	56423298	56423298	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UZ-A9PJ-01A-11D-A382-10	TCGA-UZ-A9PJ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	beb8581d-8471-4411-9521-4bf057f7d14a	b67bfe0e-ad19-4c1c-a9f3-cee65c1fee86	.	NLRP13	NM_176810	exon5	c.G1885A	p.A629T	GAGAGGCACTTTC	.	182.0	100.0	143.0	0.0	.	220	.	.	.	none	.	.	PASS	Atlas-SNP
RIN2	54453	hgsc.bcm.edu	hg19	20	19956369	19956369	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9PJ-01A-11D-A382-10	TCGA-UZ-A9PJ-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	beb8581d-8471-4411-9521-4bf057f7d14a	b67bfe0e-ad19-4c1c-a9f3-cee65c1fee86	.	RIN2	NM_001242581	exon8	c.A1847G	p.Y616C	AGAACTATTTGTC	.	172.0	79.0	197.0	0.0	.	126	.	.	.	none	.	.	PASS	Atlas-SNP
PCK1	5105	hgsc.bcm.edu	hg19	20	56138684	56138684	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9PJ-01A-11D-A382-10	TCGA-UZ-A9PJ-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	beb8581d-8471-4411-9521-4bf057f7d14a	b67bfe0e-ad19-4c1c-a9f3-cee65c1fee86	.	PCK1	NM_002591	exon6	c.T862C	p.C288R	AGCGCCTGCGGGA	.	86.0	28.0	89.0	0.0	.	95	.	.	.	none	.	.	PASS	Atlas-SNP
SON	6651	hgsc.bcm.edu	hg19	21	34927348	34927348	+	Silent	SNP	A	A	T	novel		TCGA-UZ-A9PJ-01A-11D-A382-10	TCGA-UZ-A9PJ-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	beb8581d-8471-4411-9521-4bf057f7d14a	b67bfe0e-ad19-4c1c-a9f3-cee65c1fee86	.	SON	NM_032195	exon3	c.A5811T	p.R1937R	TCGTCGACGAAGG	.	55.0	27.0	44.0	0.0	.	343	.	.	.	none	.	.	PASS	Atlas-SNP
MORC3	23515	hgsc.bcm.edu	hg19	21	37747537	37747537	+	Silent	SNP	A	A	G	novel		TCGA-UZ-A9PJ-01A-11D-A382-10	TCGA-UZ-A9PJ-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	beb8581d-8471-4411-9521-4bf057f7d14a	b67bfe0e-ad19-4c1c-a9f3-cee65c1fee86	.	MORC3	NM_015358	exon17	c.A2763G	p.V921V	TGATGTAGTTGAT	.	73.0	35.0	52.0	0.0	.	78	.	.	.	none	.	.	PASS	Atlas-SNP
C21orf2	755	hgsc.bcm.edu	hg19	21	45751780	45751780	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9PJ-01A-11D-A382-10	TCGA-UZ-A9PJ-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	beb8581d-8471-4411-9521-4bf057f7d14a	b67bfe0e-ad19-4c1c-a9f3-cee65c1fee86	.	C21orf2	NM_004928	exon5	c.T491C	p.L164P	GAGCTGAGGGAGC	.	55.0	22.0	57.0	0.0	.	10	.	.	.	none	.	.	PASS	Atlas-SNP
CELSR3	1951	hgsc.bcm.edu	hg19	3	48698992	48699004	+	Frame_Shift_Del	DEL	CGCCCGGCCTCGC	CGCCCGGCCTCGC	-	novel		TCGA-UZ-A9PJ-01A-11D-A382-10	TCGA-UZ-A9PJ-10A-01D-A385-10	CGCCCGGCCTCGC	CGCCCGGCCTCGC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	beb8581d-8471-4411-9521-4bf057f7d14a	b67bfe0e-ad19-4c1c-a9f3-cee65c1fee86	.	CELSR3	NM_001407	exon1	c.1065_1077del	p.355_359del	.	.	45.0	19.0	65.0	0.0	.	237	.	0.422222	0	none	.	.	PASS	Atlas-INDEL
RNF19A	25897	hgsc.bcm.edu	hg19	8	101299802	101299803	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-UZ-A9PJ-01A-11D-A382-10	TCGA-UZ-A9PJ-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	beb8581d-8471-4411-9521-4bf057f7d14a	b67bfe0e-ad19-4c1c-a9f3-cee65c1fee86	.	RNF19A	NM_183419	exon2	c.601_602insA	p.Y201fs	.	.	95.0	39.0	77.0	0.0	.	67	.	0.410526	0	none	.	.	PASS	Atlas-Indel,Pindel
MLLT4-AS1	653483	hgsc.bcm.edu	hg19	6	168226643	168226643	+	RNA	DEL	C	C	-	novel		TCGA-UZ-A9PJ-01A-11D-A382-10	TCGA-UZ-A9PJ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	beb8581d-8471-4411-9521-4bf057f7d14a	b67bfe0e-ad19-4c1c-a9f3-cee65c1fee86	.	.	.	.	.	.	.	.	98.0	43.0	130.0	0.0	.	.	.	0.438776	0	none	.	.	PASS	Atlas-Indel,Pindel
BPHL	670	hgsc.bcm.edu	hg19	6	3119054	3119059	+	In_Frame_Del	DEL	CACGGG	CACGGG	-	novel		TCGA-UZ-A9PJ-01A-11D-A382-10	TCGA-UZ-A9PJ-10A-01D-A385-10	CACGGG	CACGGG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	beb8581d-8471-4411-9521-4bf057f7d14a	b67bfe0e-ad19-4c1c-a9f3-cee65c1fee86	.	BPHL	NM_004332	exon1	c.79_84del	p.27_28del	.	.	46.0	15.0	59.0	0.0	.	32	.	0.326087	0	none	.	.	PASS	Atlas-Indel,Pindel
PBRM1	55193	hgsc.bcm.edu	hg19	3	52661338	52661338	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-UZ-A9PJ-01A-11D-A382-10	TCGA-UZ-A9PJ-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	beb8581d-8471-4411-9521-4bf057f7d14a	b67bfe0e-ad19-4c1c-a9f3-cee65c1fee86	.	PBRM1	NM_018313	exon14	c.1493delG	p.S498fs	.	.	32.0	16.0	39.0	0.0	.	1252	.	0.5	0	none	.	.	PASS	Atlas-Indel,Pindel
ESRRG	2104	hgsc.bcm.edu	hg19	1	216850790	216850798	+	In_Frame_Del	DEL	TGGAATCAA	TGGAATCAA	-	novel		TCGA-UZ-A9PJ-01A-11D-A382-10	TCGA-UZ-A9PJ-10A-01D-A385-10	TGGAATCAA	TGGAATCAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	beb8581d-8471-4411-9521-4bf057f7d14a	b67bfe0e-ad19-4c1c-a9f3-cee65c1fee86	.	ESRRG	NM_001243518	exon3	c.108_116del	p.36_39del	.	.	53.0	17.0	44.0	0.0	.	111	.	0.320755	0	none	.	.	PASS	Atlas-Indel,Pindel
CELSR3	1951	hgsc.bcm.edu	hg19	3	48698992	48699005	+	Frame_Shift_Del	DEL	CGCCCGGCCTCGCC	CGCCCGGCCTCGCC	-	novel		TCGA-UZ-A9PJ-01A-11D-A382-10	TCGA-UZ-A9PJ-10A-01D-A385-10	CGCCCGGCCTCGCC	CGCCCGGCCTCGCC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	beb8581d-8471-4411-9521-4bf057f7d14a	b67bfe0e-ad19-4c1c-a9f3-cee65c1fee86	.	CELSR3	NM_001407	exon1	c.1064_1077del	p.355_359del	.	.	50.0	19.0	66.0	0.0	.	237	.	0.380	.	none	.	.	PASS	Pindel