Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
GMEB1	10691	hgsc.bcm.edu	hg19	1	29037152	29037152	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	GMEB1	NM_006582	exon9	c.C1019A	p.T340K	CTCTGACAGGTAT	.	85.0	32.0	201.0	0.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
ZMYM6	9204	hgsc.bcm.edu	hg19	1	35457924	35457924	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	ZMYM6	NM_007167	exon15	c.T2057G	p.L686X	TTCTTTAAAAGCC	.	95.0	46.0	188.0	0.0	.	110	.	.	.	none	.	.	PASS	Atlas-SNP
NFYC	4802	hgsc.bcm.edu	hg19	1	41228712	41228712	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	NFYC	NM_001142587	exon7	c.G714C	p.Q238H	CCAGCAGATCCCG	.	109.0	41.0	189.0	0.0	.	39	.	.	.	none	.	.	PASS	Atlas-SNP
LRIG2	9860	hgsc.bcm.edu	hg19	1	113642882	113642882	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	LRIG2	NM_014813	exon10	c.G1222T	p.G408C	TTCATTGGTCTTG	.	325.0	145.0	506.0	0.0	.	67	.	.	.	none	.	.	PASS	Atlas-SNP
DCLRE1B	64858	hgsc.bcm.edu	hg19	1	114454066	114454066	+	Silent	SNP	C	C	T	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	DCLRE1B	NM_022836	exon4	c.C852T	p.A284A	TCGTGCCTTTGTC	.	52.0	22.0	75.0	0.0	.	36	.	.	.	none	.	.	PASS	Atlas-SNP
UBAP2L	9898	hgsc.bcm.edu	hg19	1	154221875	154221875	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	UBAP2L	NM_001127320	exon12	c.T1175C	p.M392T	GGGACATGGGCTC	.	93.0	40.0	163.0	0.0	.	197	.	.	.	none	.	.	PASS	Atlas-SNP
TTC24	164118	hgsc.bcm.edu	hg19	1	156551345	156551345	+	Silent	SNP	C	C	T	rs12729118		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	TTC24	NM_001105669	exon2	c.C189T	p.F63F	GGCCTTCCTTCTG	.	97.0	40.0	186.0	0.0	.	46	.	.	.	weak	.	.	PASS	Atlas-SNP
MYOC	4653	hgsc.bcm.edu	hg19	1	171621388	171621388	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	MYOC	NM_000261	exon1	c.G364C	p.G122R	GGGTGCCCAGCTC	.	57.0	20.0	98.0	0.0	.	69	.	.	.	none	.	.	PASS	Atlas-SNP
KLHL20	27252	hgsc.bcm.edu	hg19	1	173703270	173703270	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	KLHL20	NM_014458	exon3	c.C442A	p.L148I	TGCCTCCTCCAGC	.	72.0	28.0	108.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
RYR2	6262	hgsc.bcm.edu	hg19	1	237550598	237550598	+	Silent	SNP	C	C	T	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	RYR2,colon,carcinoma,0,1	RYR2	NM_001035	exon9	c.C594T	p.N198N	TGGCAACGGCAGC	.	72.0	6.0	120.0	0.0	.	1273	.	.	.	none	.	.	PASS	Atlas-SNP
APOB	338	hgsc.bcm.edu	hg19	2	21238299	21238299	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	APOB	NM_000384	exon22	c.G3451A	p.D1151N	ATGAGTCCATTTG	.	77.0	29.0	156.0	0.0	.	761	.	.	.	none	.	.	PASS	Atlas-SNP
ITSN2	50618	hgsc.bcm.edu	hg19	2	24524074	24524074	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	ITSN2	NM_147152	exon11	c.C1030G	p.L344V	AAGGCAGAGTTCC	.	203.0	77.0	342.0	1.0	.	224	.	.	.	none	.	.	PASS	Atlas-SNP
MTIF2	4528	hgsc.bcm.edu	hg19	2	55473542	55473542	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	MTIF2	NM_002453	exon10	c.A1037C	p.E346A	TTCAATTCTAACA	.	90.0	41.0	133.0	0.0	.	64	.	.	.	none	.	.	PASS	Atlas-SNP
NFU1	27247	hgsc.bcm.edu	hg19	2	69650823	69650823	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	NFU1	NM_001002755	exon3	c.G193A	p.D65N	GGGTATCTTGTGT	.	61.0	21.0	128.0	0.0	.	19	.	.	.	none	.	.	PASS	Atlas-SNP
TTC21B	79809	hgsc.bcm.edu	hg19	2	166737187	166737187	+	Splice_Site	SNP	A	A	T	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	TTC21B	NM_024753	exon28	c.3805+2T>A	.	AAACTCACCTACT	.	24.0	11.0	55.0	0.0	.	130	.	.	.	none	.	.	PASS	Atlas-SNP
CAB39	51719	hgsc.bcm.edu	hg19	2	231663533	231663533	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	CAB39_ENST00000258418,NS,carcinoma,0,1	CAB39	NM_001130849	exon5	c.C488T	p.S163L	TGTGGTCGGAACA	.	164.0	66.0	319.0	1.0	.	30	.	.	.	none	.	.	PASS	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41267192	41267192	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	CTNNB1	NM_001098209	exon6	c.T776A	p.L259H	CAACTCTCCACAA	.	115.0	49.0	237.0	0.0	.	4904	.	.	.	none	.	.	PASS	Atlas-SNP
RBM15B	29890	hgsc.bcm.edu	hg19	3	51429622	51429622	+	Silent	SNP	C	C	A	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	RBM15B	NM_013286	exon1	c.C792A	p.R264R	GCAGCGCTCGCTG	.	28.0	10.0	60.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
TMF1	7110	hgsc.bcm.edu	hg19	3	69096518	69096518	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	TMF1	NM_007114	exon2	c.T1338G	p.D446E	GCAAACATCTTCC	.	48.0	20.0	83.0	0.0	.	77	.	.	.	none	.	.	PASS	Atlas-SNP
LETM1	3954	hgsc.bcm.edu	hg19	4	1836665	1836665	+	Silent	SNP	G	G	T	rs145939138	alternate_allele	TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	LETM1	NM_012318	exon5	c.C783A	p.A261A	GAACTTGGCCAGC	.	35.0	21.0	52.0	0.0	.	48	.	.	.	alt	G|1.000;A|0.000	.	PASS	Atlas-SNP
PPARGC1A	10891	hgsc.bcm.edu	hg19	4	23833339	23833339	+	Silent	SNP	T	T	A	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	PPARGC1A	NM_013261	exon3	c.A270T	p.A90A	GAGGACTGCTAGC	.	52.0	21.0	112.0	0.0	.	129	.	.	.	none	.	.	PASS	Atlas-SNP
KLB	152831	hgsc.bcm.edu	hg19	4	39409127	39409127	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	KLB	NM_175737	exon1	c.C558A	p.N186K	TAGAAACATTGAA	.	71.0	35.0	175.0	0.0	.	95	.	.	.	none	.	.	PASS	Atlas-SNP
PRKG2	5593	hgsc.bcm.edu	hg19	4	82126083	82126083	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	PRKG2	NM_006259	exon1	c.A119C	p.K40T	GCATCCTTCCTCC	.	66.0	28.0	106.0	0.0	.	195	.	.	.	none	.	.	PASS	Atlas-SNP
SEC31A	22872	hgsc.bcm.edu	hg19	4	83765635	83765635	+	Missense_Mutation	SNP	T	T	C	rs375945567		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	SEC31A	NM_001077206	exon21	c.A2530G	p.I844V	GCATTATGAAACC	.	85.0	32.0	190.0	0.0	.	227	.	.	.	weak	.	.	PASS	Atlas-SNP
KIAA1109	84162	hgsc.bcm.edu	hg19	4	123150305	123150305	+	Silent	SNP	T	T	A	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	KIAA1109,NS,carcinoma,0,1	KIAA1109	NM_015312	exon23	c.T2952A	p.T984T	TCCAACTTCAGAT	.	60.0	25.0	120.0	0.0	.	424	.	.	.	none	.	.	PASS	Atlas-SNP
SAP30	8819	hgsc.bcm.edu	hg19	4	174294597	174294597	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	SAP30	NM_003864	exon2	c.C372G	p.N124K	TCGAAACAGAAGA	.	105.0	47.0	247.0	1.0	.	9	.	.	.	none	.	.	PASS	Atlas-SNP
TRIO	7204	hgsc.bcm.edu	hg19	5	14401112	14401112	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	TRIO	NM_007118	exon31	c.C4655A	p.P1552H	GAGACCCTTGCAA	.	72.0	32.0	127.0	0.0	.	305	.	.	.	none	.	.	PASS	Atlas-SNP
MAP3K1	4214	hgsc.bcm.edu	hg19	5	56178645	56178645	+	Silent	SNP	T	T	C	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	MAP3K1	NM_005921	exon14	c.T3618C	p.P1206P	AGTTCCTCAGCTG	.	34.0	12.0	61.0	0.0	.	355	.	.	.	none	.	.	PASS	Atlas-SNP
DEPDC1B	55789	hgsc.bcm.edu	hg19	5	59901536	59901536	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	DEPDC1B	NM_001145208	exon8	c.G1046A	p.G349D	CCAAAGCCATCAC	.	53.0	22.0	125.0	0.0	.	56	.	.	.	none	.	.	PASS	Atlas-SNP
THBS4	7060	hgsc.bcm.edu	hg19	5	79375049	79375049	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	THBS4	NM_003248	exon19	c.C2479T	p.R827X	CCATTCCGAGCAG	.	47.0	23.0	83.0	0.0	.	82	.	.	.	none	.	.	PASS	Atlas-SNP
ST8SIA4	7903	hgsc.bcm.edu	hg19	5	100231400	100231400	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	ST8SIA4	NM_175052	exon2	c.T203C	p.V68A	CCTTCTACATTGT	.	82.0	33.0	135.0	0.0	.	77	.	.	.	none	.	.	PASS	Atlas-SNP
ATXN1	6310	hgsc.bcm.edu	hg19	6	16327864	16327864	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.,1	ATXN1	NM_001128164	exon7	c.C678G	p.H226Q	GCTGAGGTGCTGC	.	29.0	5.0	80.0	1.0	.	117	.	.	.	none	.	.	PASS	Atlas-SNP
GRM4	2914	hgsc.bcm.edu	hg19	6	34004335	34004335	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	GRM4	NM_000841	exon9	c.T1552G	p.S518A	AGATGGAGCGGGG	.	23.0	14.0	63.0	0.0	.	317	.	.	.	none	.	.	PASS	Atlas-SNP
SPDEF	25803	hgsc.bcm.edu	hg19	6	34508954	34508954	+	Silent	SNP	G	G	T	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	SPDEF	NM_001252294	exon3	c.C441A	p.P147P	GTCCATGGGATCT	.	27.0	12.0	59.0	0.0	.	34	.	.	.	none	.	.	PASS	Atlas-SNP
C6orf223	221416	hgsc.bcm.edu	hg19	6	43969793	43969793	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	C6orf223	NM_153246	exon3	c.T212C	p.L71P	CAGATCTGGTAAC	.	58.0	22.0	98.0	0.0	.	14	.	.	.	none	.	.	PASS	Atlas-SNP
LTV1	84946	hgsc.bcm.edu	hg19	6	144179108	144179108	+	Silent	SNP	T	T	C	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	LTV1	NM_032860	exon6	c.T759C	p.N253N	GAGAAATGAACAG	.	47.0	20.0	110.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF3	7551	hgsc.bcm.edu	hg19	7	99669236	99669236	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	ZNF3	NM_032924	exon6	c.A871G	p.K291E	AGGTCTTCCCACA	.	100.0	49.0	99.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
HIPK2	28996	hgsc.bcm.edu	hg19	7	139311504	139311504	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	HIPK2	NM_022740	exon6	c.A1462G	p.S488G	TGTCGCTCCCTTC	.	106.0	46.0	98.0	0.0	.	192	.	.	.	none	.	.	PASS	Atlas-SNP
OR2F1	26211	hgsc.bcm.edu	hg19	7	143657752	143657752	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	OR2F1	NM_012369	exon1	c.C689G	p.S230C	TCCAGTCCAGAGA	.	156.0	68.0	150.0	0.0	.	71	.	.	.	none	.	.	PASS	Atlas-SNP
ATP6V1B2	526	hgsc.bcm.edu	hg19	8	20077779	20077779	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	ATP6V1B2	NM_001693	exon14	c.T1402C	p.Y468H	GGTCCTTACGAAA	.	81.0	36.0	140.0	0.0	.	34	.	.	.	none	.	.	PASS	Atlas-SNP
PLEC	5339	hgsc.bcm.edu	hg19	8	144995292	144995292	+	Silent	SNP	G	G	T	rs200383203	bycluster;by1000genomes;alternate_allele	TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	PLEC_ENST00000436759,NS,carcinoma,0,4	PLEC	NM_201380	exon32	c.C9108A	p.S3036S	GGCCTCGGAGTCA	.	28.0	14.0	64.0	0.0	.	1144	.	.	.	alt	G|1.000;A|0.000	.	PASS	Atlas-SNP
CCDC171	203238	hgsc.bcm.edu	hg19	9	15724954	15724954	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	.	NM_173550	exon14	c.G1672C	p.A558P	TCCCAGGCTTTCC	.	126.0	59.0	247.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
PRUNE2	158471	hgsc.bcm.edu	hg19	9	79322239	79322239	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	PRUNE2	NM_015225	exon8	c.A4951G	p.T1651A	GATGTGTCCCTGA	.	75.0	24.0	139.0	0.0	.	331	.	.	.	none	.	.	PASS	Atlas-SNP
RNF20	56254	hgsc.bcm.edu	hg19	9	104309714	104309714	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	RNF20	NM_019592	exon9	c.A1006G	p.K336E	GAGAACAAAGAGT	.	151.0	57.0	236.0	0.0	.	110	.	.	.	none	.	.	PASS	Atlas-SNP
SVEP1	79987	hgsc.bcm.edu	hg19	9	113241924	113241924	+	Silent	SNP	C	C	T	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	SVEP1	NM_153366	exon13	c.G2478A	p.L826L	TTTTCCCAGGGTC	.	56.0	27.0	130.0	0.0	.	326	.	.	.	none	.	.	PASS	Atlas-SNP
C9orf84	158401	hgsc.bcm.edu	hg19	9	114484785	114484785	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	C9orf84	NM_173521	exon13	c.C1843G	p.P615A	CAGTAGGGAGGGT	.	71.0	27.0	141.0	0.0	.	207	.	.	.	none	.	.	PASS	Atlas-SNP
TTC18	118491	hgsc.bcm.edu	hg19	10	75051507	75051507	+	Silent	SNP	C	C	T	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	TTC18	NM_145170	exon19	c.G2121A	p.L707L	ACACAGCAACAAG	.	96.0	35.0	166.0	0.0	.	106	.	.	.	none	.	.	PASS	Atlas-SNP
ZDHHC16	84287	hgsc.bcm.edu	hg19	10	99213338	99213338	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	ZDHHC16	NM_198046	exon7	c.T608C	p.F203S	TCTCTTTCTGCTT	.	58.0	23.0	121.0	0.0	.	25	.	.	.	none	.	.	PASS	Atlas-SNP
ZDHHC16	84287	hgsc.bcm.edu	hg19	10	99213339	99213339	+	Silent	SNP	C	C	T	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	ZDHHC16	NM_198046	exon7	c.C609T	p.F203F	CTCTTTCTGCTTT	.	58.0	23.0	121.0	0.0	.	25	.	.	.	none	.	.	PASS	Atlas-SNP
FAM160B1	57700	hgsc.bcm.edu	hg19	10	116606357	116606357	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	FAM160B1	NM_020940	exon11	c.C1438A	p.Q480K	CTTTTACAAAAAC	.	104.0	44.0	120.0	0.0	.	107	.	.	.	none	.	.	PASS	Atlas-SNP
OR52B6	340980	hgsc.bcm.edu	hg19	11	5602863	5602863	+	Missense_Mutation	SNP	C	C	T	rs375173605		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	OR52B6	NM_001005162	exon1	c.C757T	p.R253C	GATGCCCGCTCCA	.	89.0	42.0	143.0	0.0	.	37	.	.	.	weak	.	.	PASS	Atlas-SNP
F2	2147	hgsc.bcm.edu	hg19	11	46747489	46747489	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	F2	NM_000506	exon7	c.G640C	p.V214L	CAGTGTGTCCCTG	.	79.0	35.0	181.0	0.0	.	75	.	.	.	none	.	.	PASS	Atlas-SNP
CARNS1	57571	hgsc.bcm.edu	hg19	11	67191541	67191541	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	CARNS1	NM_001166222	exon10	c.G2322T	p.E774D	ACCAGAGCAGGAG	.	24.0	9.0	51.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
CWF19L2	143884	hgsc.bcm.edu	hg19	11	107326471	107326471	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	CWF19L2	NM_152434	exon2	c.G137C	p.R46P	TCTTTACGCCTTT	.	42.0	16.0	101.0	0.0	.	135	.	.	.	none	.	.	PASS	Atlas-SNP
TMPRSS13	84000	hgsc.bcm.edu	hg19	11	117789342	117789342	+	Missense_Mutation	SNP	T	T	C	rs75037497	bycluster	TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.,4	TMPRSS13	NM_001206790	exon2	c.A233G	p.Q78R	GATGCCTGGGCTG	.	62.0	13.0	94.0	0.0	.	75	.	.	.	weak	T|0.500;C|0.500	0.500	PASS	Atlas-SNP
OR8D2	283160	hgsc.bcm.edu	hg19	11	124190009	124190009	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	OR8D2	NM_001002918	exon1	c.C85T	p.L29F	ACAGGAGGAAGAG	.	50.0	19.0	117.0	0.0	.	65	.	.	.	none	.	.	PASS	Atlas-SNP
ERC1	23085	hgsc.bcm.edu	hg19	12	1137356	1137356	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	ERC1	NM_178039	exon2	c.G287A	p.G96E	CTGGGGGACGTCT	.	68.0	39.0	103.0	0.0	.	95	.	.	.	none	.	.	PASS	Atlas-SNP
DCP1B	196513	hgsc.bcm.edu	hg19	12	2061663	2061663	+	Silent	SNP	A	A	T	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	DCP1B	NM_152640	exon7	c.T1443A	p.A481A	GCTCTGAGCGAGC	.	88.0	52.0	105.0	0.0	.	63	.	.	.	none	.	.	PASS	Atlas-SNP
ACVR1B	91	hgsc.bcm.edu	hg19	12	52379093	52379093	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	ACVR1B	NM_020328	exon7	c.C1220T	p.T407I	CTGACACCATTGA	.	112.0	72.0	173.0	0.0	.	167	.	.	.	none	.	.	PASS	Atlas-SNP
SLC25A3	5250	hgsc.bcm.edu	hg19	12	98993879	98993879	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	SLC25A3	NM_005888	exon6	c.T791C	p.V264A	AGCTGGTTGTAAC	.	89.0	52.0	80.0	0.0	.	95	.	.	.	none	.	.	PASS	Atlas-SNP
HSPB8	26353	hgsc.bcm.edu	hg19	12	119617127	119617127	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	HSPB8	NM_014365	exon1	c.G10A	p.G4S	GCTGACGGTCAGA	.	20.0	7.0	41.0	0.0	.	45	.	.	.	none	.	.	PASS	Atlas-SNP
DZIP1	22873	hgsc.bcm.edu	hg19	13	96293651	96293651	+	Silent	SNP	C	C	T	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	DZIP1	NM_014934	exon5	c.G495A	p.K165K	CGCCTGCTTGGTG	.	53.0	35.0	82.0	0.0	.	195	.	.	.	none	.	.	PASS	Atlas-SNP
AP5M1	55745	hgsc.bcm.edu	hg19	14	57747111	57747111	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	.	NM_018229	exon3	c.T919A	p.S307T	TTAGAGTCATTCA	.	86.0	35.0	178.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
ADSSL1	122622	hgsc.bcm.edu	hg19	14	105208271	105208271	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	ADSSL1	NM_199165	exon9	c.G1009A	p.V337M	GGTGACGTGTATG	.	76.0	28.0	128.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
SNURF	8926	hgsc.bcm.edu	hg19	15	25207312	25207312	+	Silent	SNP	A	A	G	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	SNURF	NM_005678	exon2	c.A66G	p.E22E	GGTGGAAGTCCAA	.	75.0	30.0	152.0	0.0	.	17	.	.	.	none	.	.	PASS	Atlas-SNP
HERC2	8924	hgsc.bcm.edu	hg19	15	28369256	28369256	+	Missense_Mutation	SNP	G	G	A	rs371676185		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	HERC2	NM_004667	exon85	c.C13115T	p.S4372L	TCGAGCGAGCCTT	.	73.0	31.0	123.0	0.0	.	501	.	.	.	weak	.	.	PASS	Atlas-SNP
RYR3	6263	hgsc.bcm.edu	hg19	15	34127190	34127190	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	RYR3	NM_001036	exon87	c.C11485A	p.Q3829K	AATCAACAGAGCC	.	29.0	10.0	68.0	0.0	.	760	.	.	.	none	.	.	PASS	Atlas-SNP
GNB5	10681	hgsc.bcm.edu	hg19	15	52425644	52425644	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	GNB5	NM_016194	exon9	c.T794C	p.V265A	TCCCACACCATGG	.	55.0	21.0	95.0	0.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
RASGRF1	5923	hgsc.bcm.edu	hg19	15	79294058	79294058	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	RASGRF1	NM_002891	exon17	c.T2569C	p.S857P	TTGGTGATGTTTC	.	79.0	4.0	161.0	0.0	.	168	.	.	.	none	.	.	PASS	Atlas-SNP
WDR93	56964	hgsc.bcm.edu	hg19	15	90260171	90260171	+	Silent	SNP	T	T	C	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	WDR93	NM_020212	exon7	c.T786C	p.P262P	AGATCCTTTAGAA	.	104.0	46.0	151.0	0.0	.	63	.	.	.	none	.	.	PASS	Atlas-SNP
CLN3	1201	hgsc.bcm.edu	hg19	16	28497728	28497728	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	CLN3	NM_001042432	exon9	c.G617T	p.G206V	GAGAGGCCGGCCT	.	144.0	46.0	180.0	0.0	.	33	.	.	.	none	.	.	PASS	Atlas-SNP
TERF2IP	54386	hgsc.bcm.edu	hg19	16	75690303	75690303	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	TERF2IP	NM_018975	exon3	c.G994A	p.V332I	TCAACAGTTACAC	.	181.0	45.0	214.0	0.0	.	17	.	.	.	none	.	.	PASS	Atlas-SNP
ARHGAP23	57636	hgsc.bcm.edu	hg19	17	36638765	36638765	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	ARHGAP23,colon,carcinoma,0,1	ARHGAP23	NM_001199417	exon16	c.G2753A	p.R918H	CCCAGCGCGTCCC	.	78.0	46.0	132.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
UTP18	51096	hgsc.bcm.edu	hg19	17	49357809	49357809	+	Silent	SNP	T	T	C	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	UTP18	NM_016001	exon9	c.T1173C	p.S391S	ATTCTCTTCAGAT	.	356.0	87.0	403.0	0.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
DDX5	1655	hgsc.bcm.edu	hg19	17	62496750	62496750	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	DDX5_ENST00000540698,colon,carcinoma,0,2	DDX5	NM_004396	exon12	c.T1358A	p.V453E	TCGCTCACTTGCT	.	126.0	68.0	176.0	0.0	.	101	.	.	.	none	.	.	PASS	Atlas-SNP
SLC25A19	60386	hgsc.bcm.edu	hg19	17	73273495	73273495	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	SLC25A19	NM_001126122	exon6	c.A713C	p.D238A	AAGAGGTCCAGCG	.	56.0	13.0	103.0	0.0	.	25	.	.	.	none	.	.	PASS	Atlas-SNP
CD7	924	hgsc.bcm.edu	hg19	17	80274183	80274183	+	Missense_Mutation	SNP	G	G	C	rs199986856	by1000genomes;alternate_allele	TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	CD7,rectum,carcinoma,0,2	CD7	NM_006137	exon3	c.C500G	p.A167G	GCAGAGGCTGTCT	.	63.0	9.0	117.0	1.0	.	25	.	.	.	alt	G|0.999;A|0.001	.	PASS	Atlas-SNP
ALPK2	115701	hgsc.bcm.edu	hg19	18	56202906	56202906	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	ALPK2	NM_052947	exon5	c.C4513G	p.P1505A	CACTTGGAATTCT	.	90.0	31.0	172.0	0.0	.	487	.	.	.	none	.	.	PASS	Atlas-SNP
ADAMTS10	81794	hgsc.bcm.edu	hg19	19	8661948	8661948	+	Silent	SNP	G	G	A	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	ADAMTS10	NM_030957	exon8	c.C963T	p.I321I	GTTCACGATGGAT	.	63.0	28.0	79.0	0.0	.	132	.	.	.	none	.	.	PASS	Atlas-SNP
KLF1	10661	hgsc.bcm.edu	hg19	19	12996546	12996546	+	Silent	SNP	C	C	A	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	KLF1	NM_006563	exon2	c.G498T	p.L166L	CGGTTGCAGCGCC	.	37.0	18.0	61.0	0.0	.	15	.	.	.	none	.	.	PASS	Atlas-SNP
CYP4F2	8529	hgsc.bcm.edu	hg19	19	16006325	16006325	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	CYP4F2	NM_001082	exon3	c.A334T	p.N112Y	AGGCGTTGATGAC	.	34.0	15.0	69.0	0.0	.	97	.	.	.	none	.	.	PASS	Atlas-SNP
UNC13A	23025	hgsc.bcm.edu	hg19	19	17722656	17722656	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	UNC13A	NM_001080421	exon40	c.G4567A	p.V1523I	CTTCTACACCCAA	.	59.0	22.0	119.0	0.0	.	299	.	.	.	none	.	.	PASS	Atlas-SNP
SLC25A42	284439	hgsc.bcm.edu	hg19	19	19217183	19217183	+	Silent	SNP	C	C	A	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	SLC25A42	NM_178526	exon6	c.C486A	p.T162T	CGTAACCCCGAAG	.	24.0	10.0	55.0	0.0	.	18	.	.	.	none	.	.	PASS	Atlas-SNP
MAG	4099	hgsc.bcm.edu	hg19	19	35800864	35800864	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	MAG	NM_080600	exon8	c.C1319T	p.P440L	CGGAGCCGTCCGT	.	77.0	32.0	121.0	0.0	.	172	.	.	.	none	.	.	PASS	Atlas-SNP
LTBP4	8425	hgsc.bcm.edu	hg19	19	41117892	41117892	+	Splice_Site	SNP	T	T	A	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	LTBP4	NM_003573	exon17	c.2269+2T>A	.	CGAGGGTGAGGCC	.	67.0	33.0	79.0	0.0	.	101	.	.	.	none	.	.	PASS	Atlas-SNP
LSM14B	149986	hgsc.bcm.edu	hg19	20	60705652	60705652	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	LSM14B	NM_144703	exon6	c.T740C	p.I247T	ACACAATCAAATT	.	110.0	44.0	220.0	0.0	.	62	.	.	.	none	.	.	PASS	Atlas-SNP
BCL2L13	23786	hgsc.bcm.edu	hg19	22	18185096	18185096	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	BCL2L13	NM_001270732	exon4	c.G317A	p.W106X	CAGTTTGGCGTGA	.	88.0	35.0	173.0	0.0	.	27	.	.	.	none	.	.	PASS	Atlas-SNP
TCN2	6948	hgsc.bcm.edu	hg19	22	31011613	31011613	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	TCN2	NM_000355	exon6	c.G779A	p.G260E	TGCGTGGGGCAGA	.	46.0	15.0	102.0	0.0	.	44	.	.	.	none	.	.	PASS	Atlas-SNP
RNF185	91445	hgsc.bcm.edu	hg19	22	31600511	31600511	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	RNF185	NM_152267	exon7	c.T518A	p.F173Y	AGCAGTTCCTGTC	.	42.0	21.0	71.0	0.0	.	14	.	.	.	none	.	.	PASS	Atlas-SNP
SMC1B	27127	hgsc.bcm.edu	hg19	22	45809422	45809422	+	Silent	SNP	C	C	G	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	SMC1B	NM_148674	exon1	c.G27C	p.V9V	ATTTTCCACAAGC	.	104.0	50.0	169.0	0.0	.	215	.	.	.	none	.	.	PASS	Atlas-SNP
PTCHD1	139411	hgsc.bcm.edu	hg19	X	23353163	23353163	+	Silent	SNP	G	G	A	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	PTCHD1	NM_173495	exon1	c.G171A	p.A57A	GCTGGCGCCCCAG	.	47.0	41.0	78.0	0.0	.	213	.	.	.	none	.	.	PASS	Atlas-SNP
ELK1	2002	hgsc.bcm.edu	hg19	X	47497265	47497265	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	ELK1	NM_001114123	exon5	c.G971A	p.S324N	CTCGGGCTGAGTG	.	29.0	26.0	60.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
CLCN5	1184	hgsc.bcm.edu	hg19	X	49846494	49846494	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	CLCN5	NM_001127898	exon9	c.A923G	p.K308R	AAGCCAAGCGCAG	.	28.0	21.0	65.0	0.0	.	137	.	.	.	none	.	.	PASS	Atlas-SNP
NAA10	8260	hgsc.bcm.edu	hg19	X	153199832	153199832	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	NAA10	NM_001256119	exon2	c.C118A	p.Q40K	CCACCTGGGGCCA	.	41.0	36.0	73.0	0.0	.	18	.	.	.	none	.	.	PASS	Atlas-SNP
SUPT20HL1	100130302	hgsc.bcm.edu	hg19	X	24382400	24382401	+	In_Frame_Ins	INS	-	-	TAT	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	.	NM_001136234	exon1	c.1523_1524insTAT	p.A508delinsAI	.	.	56.0	24.0	90.0	0.0	.	.	.	0.428571	0	none	.	.	PASS	Atlas-INDEL
CRYBG3	131544	hgsc.bcm.edu	hg19	3	97596113	97596114	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	CRYBG3	NM_153605	exon4	c.6075_6076insT	p.L2025fs	.	.	141.0	54.0	215.0	0.0	.	86	.	0.382979	0	none	.	.	PASS	Atlas-Indel,Pindel
ESF1	51575	hgsc.bcm.edu	hg19	20	13756539	13756540	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	ESF1	NM_016649	exon3	c.1015_1016insA	p.D339fs	.	.	76.0	28.0	134.0	0.0	.	77	.	0.368421	0	none	.	.	PASS	Atlas-Indel,Pindel
TTLL13	440307	hgsc.bcm.edu	hg19	15	90796537	90796540	+	Frame_Shift_Del	DEL	ACTC	ACTC	-	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	ACTC	ACTC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	TTLL13	NM_001029964	exon4	c.354_357del	p.118_119del	.	.	87.0	25.0	129.0	0.0	.	44	.	0.287356	0	none	.	.	PASS	Atlas-Indel,Pindel
ARHGAP22	58504	hgsc.bcm.edu	hg19	10	49659125	49659127	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	GAA	GAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	ARHGAP22	NM_001256024	exon9	c.1094_1096del	p.365_366del	.	.	94.0	34.0	197.0	0.0	.	94	.	0.361702	0	none	.	.	PASS	Atlas-Indel,Pindel
GOLGA4	2803	hgsc.bcm.edu	hg19	3	37369055	37369056	+	Frame_Shift_Ins	INS	-	-	AAAT	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	GOLGA4	NM_001172713	exon15	c.5744_5745insAAAT	p.R1915fs	.	.	217.0	88.0	401.0	0.0	.	173	.	0.40553	0	none	.	.	PASS	Atlas-Indel,Pindel
TNRC18	84629	hgsc.bcm.edu	hg19	7	5354660	5354669	+	Frame_Shift_Del	DEL	TGGCTCCTGG	TGGCTCCTGG	-	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	TGGCTCCTGG	TGGCTCCTGG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	TNRC18	NM_001080495	exon26	c.6974_6983del	p.2325_2328del	.	.	123.0	42.0	144.0	0.0	.	311	.	0.341463	0	none	.	.	PASS	Atlas-Indel,Pindel
CD7	924	hgsc.bcm.edu	hg19	17	80274159	80274160	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.,1	CD7	NM_006137	exon3	c.524_525insA	p.A175fs	.	.	62.0	15.0	97.0	0.0	.	25	.	0.241935	0	none	.	.	PASS	Atlas-INDEL
MKI67	4288	hgsc.bcm.edu	hg19	10	129904535	129904535	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	MKI67	NM_002417	exon13	c.5570delT	p.I1857fs	.	.	107.0	43.0	168.0	0.0	.	363	.	0.401869	0	none	.	.	PASS	Atlas-Indel,Pindel
ACSS2	55902	hgsc.bcm.edu	hg19	20	33470621	33470621	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	ACSS2	NM_001076552	exon2	c.202delG	p.E68fs	.	.	90.0	33.0	171.0	0.0	.	75	.	0.366667	0	none	.	.	PASS	Atlas-Indel,Pindel
DYNC1I2	1781	hgsc.bcm.edu	hg19	2	172582207	172582208	+	Frame_Shift_Ins	INS	-	-	GA	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	DYNC1I2	NM_001378	exon8	c.591_592insGA	p.E197fs	.	.	147.0	60.0	260.0	0.0	.	43	.	0.408163	0	none	.	.	PASS	Atlas-Indel,Pindel
WDFY3	23001	hgsc.bcm.edu	hg19	4	85729530	85729531	+	Frame_Shift_Ins	INS	-	-	AG	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	WDFY3	NM_014991	exon15	c.2386_2387insCT	p.S796fs	.	.	204.0	84.0	349.0	0.0	.	314	.	0.411765	0	none	.	.	PASS	Atlas-Indel,Pindel
ABCC4	10257	hgsc.bcm.edu	hg19	13	95859038	95859041	+	Splice_Site	DEL	GAAA	GAAA	-	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	GAAA	GAAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	ABCC4	.	.	.	.	.	.	73.0	22.0	103.0	0.0	.	248	.	0.30137	0	none	.	.	PASS	Atlas-Indel,Pindel
KL	9365	hgsc.bcm.edu	hg19	13	33628024	33628024	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	KL	NM_004795	exon2	c.939delC	p.I313fs	.	.	150.0	60.0	185.0	0.0	.	106	.	0.4	0	none	.	.	PASS	Atlas-Indel,Pindel
ZDHHC16	84287	hgsc.bcm.edu	hg19	10	99213325	99213327	+	In_Frame_Del	DEL	TAC	TAC	-	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	TAC	TAC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	ZDHHC16	NM_032327	exon6	c.594_596del	p.198_199del	.	.	55.0	22.0	109.0	0.0	.	25	.	0.4	0	none	.	.	PASS	Atlas-Indel,Pindel
CD7	924	hgsc.bcm.edu	hg19	17	80274162	80274162	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	CD7	NM_006137	exon3	c.522delA	p.P174fs	.	.	58.0	15.0	92.0	0.0	.	25	.	0.258621	0	none	.	.	PASS	Atlas-INDEL
TSHR	7253	hgsc.bcm.edu	hg19	14	81610606	81610606	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	TSHR	NM_000369	exon10	c.2203delA	p.M735fs	.	.	113.0	31.0	193.0	0.0	.	462	.	0.274	.	none	.	.	PASS	Pindel
STAT5A	6776	hgsc.bcm.edu	hg19	17	40461463	40461482	+	Frame_Shift_Del	DEL	CTGTGTGCCCCCAGGCTCCC	CTGTGTGCCCCCAGGCTCCC	-	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	CTGTGTGCCCCCAGGCTCCC	CTGTGTGCCCCCAGGCTCCC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	STAT5A	NM_003152	exon19	c.2182_2201del	p.728_734del	.	.	112.0	10.0	181.0	0.0	.	49	.	0.089	.	none	.	.	PASS	Pindel
MYOF	26509	hgsc.bcm.edu	hg19	10	95076511	95076511	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-UZ-A9PX-01A-11D-A42J-10	TCGA-UZ-A9PX-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b648818d-4e4e-47da-a20b-366ef8d54eaf	bd3cecf6-5961-4472-b1dc-a7d96c6da4a1	.	MYOF	NM_013451	exon50	c.5659delA	p.I1887fs	.	.	90.0	28.0	190.0	0.0	.	177	.	0.311	.	none	.	.	PASS	Pindel