Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm PLEKHG5 57449 hgsc.bcm.edu hg19 1 6556604 6556604 + Silent SNP C C T novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . PLEKHG5 NM_001265592 exon2 c.G99A p.K33K CAGTCCCTTCTTT . 214.0 82.0 174.0 0.0 . 66 . . . none . . PASS Atlas-SNP KAZN 23254 hgsc.bcm.edu hg19 1 15438985 15438985 + Missense_Mutation SNP C C T novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . KAZN NM_201628 exon14 c.C2111T p.T704M GCGTCACGCGGGC . 349.0 137.0 284.0 0.0 . 57 . . . none . . PASS Atlas-SNP XPR1 9213 hgsc.bcm.edu hg19 1 180843044 180843044 + Missense_Mutation SNP A A C novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . XPR1 NM_004736 exon13 c.A1774C p.I592L GACATCATTGCTA . 72.0 32.0 74.0 0.0 . 76 . . . none . . PASS Atlas-SNP SYT2 127833 hgsc.bcm.edu hg19 1 202572220 202572220 + Silent SNP C C G novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . SYT2 NM_177402 exon4 c.G372C p.L124L CTCAGTCAGGCCT . 100.0 41.0 68.0 0.0 . 51 . . . none . . PASS Atlas-SNP ADAM17 6868 hgsc.bcm.edu hg19 2 9666345 9666345 + Silent SNP A A G novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . ADAM17 NM_003183 exon6 c.T648C p.A216A TGGGTCAGCTCTT . 77.0 21.0 54.0 0.0 . 61 . . . none . . PASS Atlas-SNP ARID5A 10865 hgsc.bcm.edu hg19 2 97217448 97217448 + Missense_Mutation SNP C C A novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . ARID5A NM_212481 exon7 c.C1183A p.R395S GCTAACCGCCCTT . 159.0 64.0 153.0 0.0 . 31 . . . none . . PASS Atlas-SNP BOLL 66037 hgsc.bcm.edu hg19 2 198643755 198643755 + Silent SNP C C T novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . BOLL NM_197970 exon3 c.G201A p.Q67Q CCCATACTGGGAA . 79.0 32.0 73.0 0.0 . 67 . . . none . . PASS Atlas-SNP CCR9 10803 hgsc.bcm.edu hg19 3 45942933 45942933 + Missense_Mutation SNP A A T novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . CCR9 NM_031200 exon3 c.A653T p.K218M CCCTGAAGGTCAT . 124.0 51.0 86.0 0.0 . 45 . . . none . . PASS Atlas-SNP CEP135 9662 hgsc.bcm.edu hg19 4 56818348 56818348 + Nonsense_Mutation SNP C C T novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . CEP135 NM_025009 exon2 c.C52T p.Q18X CTGGATCAGCTGG . 463.0 172.0 413.0 0.0 . 115 . . . none . . PASS Atlas-SNP RPS3A 6189 hgsc.bcm.edu hg19 4 152021725 152021725 + Silent SNP A A C novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . RPS3A NM_001006 exon2 c.A151C p.R51R GTCACCAGGACCC . 72.0 33.0 45.0 0.0 . 11 . . . none . . PASS Atlas-SNP RXFP1 59350 hgsc.bcm.edu hg19 4 159573058 159573058 + Missense_Mutation SNP G G T novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c RXFP1,NS,carcinoma,0,1 RXFP1 NM_001253727 exon18 c.G2206T p.G736C AGCAAAGGTCAGA . 82.0 30.0 97.0 0.0 . 98 . . . none . . PASS Atlas-SNP SGTB 54557 hgsc.bcm.edu hg19 5 65016544 65016544 + Missense_Mutation SNP T T C novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . SGTB NM_019072 exon2 c.A91G p.S31G CCAAACTTTCTTG . 103.0 49.0 73.0 0.0 . 22 . . . none . . PASS Atlas-SNP OTP 23440 hgsc.bcm.edu hg19 5 76926470 76926470 + Silent SNP C C T novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . OTP NM_032109 exon3 c.G597A p.L199L AGAGCACAGGCTG . 61.0 23.0 46.0 0.0 . 29 . . . none . . PASS Atlas-SNP ZFYVE16 9765 hgsc.bcm.edu hg19 5 79743873 79743873 + Missense_Mutation SNP C C T novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . ZFYVE16 NM_001105251 exon8 c.C2753T p.S918F CCCATTCTACTAC . 116.0 43.0 117.0 0.0 . 100 . . . none . . PASS Atlas-SNP MRS2 57380 hgsc.bcm.edu hg19 6 24423170 24423170 + Silent SNP T T C novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . MRS2 NM_020662 exon10 c.T1113C p.H371H GGACCATAGAATT . 47.0 16.0 54.0 0.0 . 31 . . . none . . PASS Atlas-SNP OPRM1 4988 hgsc.bcm.edu hg19 6 154360579 154360579 + Missense_Mutation SNP T T A novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . OPRM1 NM_001145279 exon3 c.T179A p.L60Q AGGAGCTGTGGCA . 86.0 33.0 68.0 0.0 . 241 . . . none . . PASS Atlas-SNP CNKSR3 154043 hgsc.bcm.edu hg19 6 154732219 154732219 + Silent SNP A A C novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . CNKSR3 NM_173515 exon11 c.T1128G p.P376P AGGACCAGGCAAT . 119.0 48.0 78.0 0.0 . 56 . . . none . . PASS Atlas-SNP FGFR1OP 11116 hgsc.bcm.edu hg19 6 167438317 167438317 + Missense_Mutation SNP A A G novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . FGFR1OP NM_007045 exon9 c.A854G p.D285G TCTCGGATGCACC . 285.0 119.0 243.0 1.0 . 24 . . . none . . PASS Atlas-SNP AEBP1 165 hgsc.bcm.edu hg19 7 44150559 44150559 + Silent SNP C C A novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . AEBP1 NM_001129 exon13 c.C1533A p.L511L TGAGCTCCCAGAG . 134.0 80.0 88.0 0.0 . 102 . . . none . . PASS Atlas-SNP PTPN12 5782 hgsc.bcm.edu hg19 7 77256523 77256523 + Silent SNP T T A novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . PTPN12 NM_002835 exon13 c.T1527A p.T509T AGTTACTCCACCA . 217.0 124.0 103.0 0.0 . 83 . . . none . . PASS Atlas-SNP CCDC132 55610 hgsc.bcm.edu hg19 7 92885845 92885845 + Missense_Mutation SNP A A G novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . CCDC132 NM_024553 exon5 c.A322G p.I108V GATTTAATCCTTG . 93.0 20.0 58.0 0.0 . 136 . . . none . . PASS Atlas-SNP TMUB1 83590 hgsc.bcm.edu hg19 7 150779559 150779559 + Missense_Mutation SNP G G C novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . TMUB1 NM_031434 exon2 c.C92G p.T31R GTGTGCGTTGAGA . 201.0 118.0 131.0 0.0 . 7 . . . none . . PASS Atlas-SNP MLL3 58508 hgsc.bcm.edu hg19 7 151853289 151853289 + Splice_Site SNP C C T novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . MLL3 NM_170606 exon46 c.11812+1G>A . ATCATACCTTCAT . 81.0 52.0 68.0 0.0 . 1564 . . . none . . PASS Atlas-SNP SORBS3 10174 hgsc.bcm.edu hg19 8 22432205 22432205 + Silent SNP C C T novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . SORBS3 NM_005775 exon21 c.C1980T p.F660F GAAATTCGGAACG . 115.0 47.0 83.0 0.0 . 45 . . . none . . PASS Atlas-SNP GSR 2936 hgsc.bcm.edu hg19 8 30537066 30537066 + Missense_Mutation SNP A A G novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . GSR NM_000637 exon13 c.T1540C p.S514P CTGAAGAGGTAGG . 120.0 46.0 104.0 0.0 . 53 . . . none . . PASS Atlas-SNP RORB 6096 hgsc.bcm.edu hg19 9 77300383 77300383 + Missense_Mutation SNP T T A novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . RORB NM_006914 exon10 c.T1229A p.I410K AGTTAATAGCCAA . 86.0 37.0 64.0 0.0 . 89 . . . none . . PASS Atlas-SNP SPATA31D1 389763 hgsc.bcm.edu hg19 9 84609332 84609332 + Missense_Mutation SNP G G A novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c FAM75D4,NS,carcinoma,0,2 . NM_001001670 exon4 c.G3947A p.R1316H CCCAACGCAGGAG . 123.0 50.0 129.0 1.0 . . . . . none . . PASS Atlas-SNP IARS 3376 hgsc.bcm.edu hg19 9 95027351 95027351 + Silent SNP G G A novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . IARS NM_013417 exon16 c.C1560T p.I520I TTCAGAGATGCGG . 157.0 62.0 140.0 0.0 . 74 . . . none . . PASS Atlas-SNP FAM73B 84895 hgsc.bcm.edu hg19 9 131832215 131832215 + Nonsense_Mutation SNP C C T novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . FAM73B NM_032809 exon15 c.C1546T p.Q516X AAGCCTCAGCTTG . 60.0 16.0 60.0 0.0 . 37 . . . none . . PASS Atlas-SNP RAPGEF1 2889 hgsc.bcm.edu hg19 9 134464315 134464315 + Missense_Mutation SNP C C T novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . RAPGEF1 NM_198679 exon17 c.G2422A p.V808M TGCACACCAGGCG . 74.0 35.0 41.0 0.0 . 126 . . . none . . PASS Atlas-SNP PTEN 5728 hgsc.bcm.edu hg19 10 89653783 89653783 + Nonsense_Mutation SNP T T A novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c PTEN,colon,carcinoma,+1,2 PTEN NM_000314 exon2 c.T81A p.Y27X CTCAGATATTTAT . 69.0 55.0 52.0 0.0 . 3652 . . . none . . PASS Atlas-SNP EEF1G 1937 hgsc.bcm.edu hg19 11 62327757 62327757 + Missense_Mutation SNP T T A novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . EEF1G NM_001404 exon8 c.A1027T p.T343S TACCAGTGATGAG . 107.0 39.0 108.0 0.0 . 33 . . . none . . PASS Atlas-SNP GPR152 390212 hgsc.bcm.edu hg19 11 67219103 67219103 + Missense_Mutation SNP G G C novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . GPR152 NM_206997 exon1 c.C1093G p.Q365E GTGGCTGGAGTGT . 55.0 23.0 49.0 0.0 . 41 . . . none . . PASS Atlas-SNP KRTAP5-8 57830 hgsc.bcm.edu hg19 11 71249532 71249532 + Missense_Mutation SNP C C G rs11234084 TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . KRTAP5-8 NM_021046 exon1 c.C431G p.S144C GCTGTTCCCAGTC . 99.0 6.0 66.0 0.0 . 28 . . . weak . . PASS Atlas-SNP HSPA8 3312 hgsc.bcm.edu hg19 11 122930962 122930962 + Silent SNP A A G novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . HSPA8 NM_006597 exon4 c.T426C p.A142A GACCACAGCATTG . 35.0 19.0 28.0 0.0 . 168 . . . none . . PASS Atlas-SNP EPS8 2059 hgsc.bcm.edu hg19 12 15776128 15776128 + Silent SNP G G C novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . EPS8 NM_004447 exon20 c.C2319G p.V773V GCTATAGACTCTC . 149.0 81.0 60.0 0.0 . 70 . . . none . . PASS Atlas-SNP PDZRN4 29951 hgsc.bcm.edu hg19 12 41966314 41966314 + Missense_Mutation SNP A A T rs370916106 alternate_allele TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . PDZRN4 NM_001164595 exon10 c.A1733T p.N578I ACCCCAATAGCAC . 291.0 82.0 187.0 0.0 . 346 . . . alt . . PASS Atlas-SNP TARBP2 6895 hgsc.bcm.edu hg19 12 53899550 53899550 + Silent SNP C C T novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . TARBP2 NM_134323 exon8 c.C859T p.L287L GGCTCCCTGGGTG . 77.0 17.0 57.0 0.0 . 35 . . . none . . PASS Atlas-SNP NAV3 89795 hgsc.bcm.edu hg19 12 78516178 78516178 + Missense_Mutation SNP C C T novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c NAV3,NS,carcinoma,0,2 NAV3 NM_014903 exon16 c.C4208T p.T1403M TGAGAACGGGTAG . 60.0 5.0 36.0 0.0 . 506 . . . none . . PASS Atlas-SNP NUPL1 9818 hgsc.bcm.edu hg19 13 25895072 25895072 + Missense_Mutation SNP G G C novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . NUPL1 NM_014089 exon9 c.G792C p.E264D GAAGGAGCAGAAA . 87.0 32.0 88.0 0.0 . 37 . . . none . . PASS Atlas-SNP MYO16 23026 hgsc.bcm.edu hg19 13 109379841 109379841 + Silent SNP C C T novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . MYO16 NM_001198950 exon4 c.C417T p.V139V AGGAGTCAACGTC . 116.0 50.0 81.0 0.0 . 285 . . . none . . PASS Atlas-SNP SLC7A7 9056 hgsc.bcm.edu hg19 14 23242825 23242825 + Silent SNP A A T novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . SLC7A7 NM_001126105 exon11 c.T1530A p.S510S TTAGTTAGATTTG . 88.0 41.0 89.0 0.0 . 36 . . . none . . PASS Atlas-SNP HECTD1 25831 hgsc.bcm.edu hg19 14 31604218 31604218 + Missense_Mutation SNP T T C novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . HECTD1 NM_015382 exon22 c.A3438G p.I1146M TGATGGTATCACC . 117.0 44.0 123.0 0.0 . 159 . . . none . . PASS Atlas-SNP DMXL2 23312 hgsc.bcm.edu hg19 15 51783940 51783940 + Silent SNP G G A novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . DMXL2 NM_001174116 exon20 c.C4788T p.V1596V TGTAGAGACACCT . 63.0 29.0 65.0 0.0 . 262 . . . none . . PASS Atlas-SNP ALPK3 57538 hgsc.bcm.edu hg19 15 85360356 85360356 + Silent SNP C C T novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . ALPK3 NM_020778 exon1 c.C279T p.C93C CCGCTGCGCCTTC . 74.0 24.0 75.0 0.0 . 289 . . . none . . PASS Atlas-SNP ANPEP 290 hgsc.bcm.edu hg19 15 90340878 90340878 + Missense_Mutation SNP C C A novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . ANPEP NM_001150 exon15 c.G2085T p.W695C GGCCTCCCAGGGC . 145.0 70.0 96.0 0.0 . 124 . . . none . . PASS Atlas-SNP ANPEP 290 hgsc.bcm.edu hg19 15 90349261 90349261 + Missense_Mutation SNP T T C novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . ANPEP NM_001150 exon2 c.A554G p.E185G GCCAACTCCCCCT . 42.0 20.0 33.0 0.0 . 124 . . . none . . PASS Atlas-SNP NUDT16L1 84309 hgsc.bcm.edu hg19 16 4745104 4745104 + Missense_Mutation SNP A A G novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . NUDT16L1 NM_032349 exon3 c.A560G p.K187R AGGAGAAGCTGGT . 129.0 32.0 59.0 0.0 . 13 . . . none . . PASS Atlas-SNP GFOD2 81577 hgsc.bcm.edu hg19 16 67719468 67719468 + Missense_Mutation SNP C C T rs145155253 TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . GFOD2 NM_001243650 exon2 c.G151A p.A51T AGAAGGCGATGTT . 96.0 28.0 58.0 0.0 . 36 . . . weak C|1.000;T|0.000 0.000 PASS Atlas-SNP SMG6 23293 hgsc.bcm.edu hg19 17 1989066 1989066 + Missense_Mutation SNP T T C rs369806279 TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . SMG6 NM_017575 exon14 c.A3487G p.M1163V TTCCCATGGTGTC . 123.0 11.0 95.0 0.0 . 97 . . . weak . . PASS Atlas-SNP RAI1 10743 hgsc.bcm.edu hg19 17 17699195 17699195 + Missense_Mutation SNP A A T novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . RAI1 NM_030665 exon3 c.A2933T p.K978M CCAACAAGCCTGC . 59.0 25.0 27.0 0.0 . 121 . . . none . . PASS Atlas-SNP FAM83G 644815 hgsc.bcm.edu hg19 17 18882130 18882130 + Silent SNP A A G novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . FAM83G NM_001039999 exon5 c.T849C p.N283N GATCACATTCCGG . 158.0 73.0 165.0 0.0 . 51 . . . none . . PASS Atlas-SNP KIAA0100 9703 hgsc.bcm.edu hg19 17 26961608 26961608 + Silent SNP A A G novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c KIAA0100,NS,carcinoma,0,1 KIAA0100 NM_014680 exon16 c.T2997C p.P999P GGGAAAAGGGCTG . 97.0 4.0 79.0 0.0 . 175 . . . none . . PASS Atlas-SNP KRTAP4-7 100132476 hgsc.bcm.edu hg19 17 39240791 39240791 + Silent SNP C C G novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c KRTAP4-9_ENST00000377734,NS,carcinoma,0,2 KRTAP4-7 NM_033061 exon1 c.C333G p.R111R CTGCCGCCCCAGC . 42.0 6.0 19.0 0.0 . 49 . . . none . . PASS Atlas-SNP KRT34 3885 hgsc.bcm.edu hg19 17 39538610 39538610 + Silent SNP C C T novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . KRT34 NM_021013 exon1 c.G15A p.K5K TGGGGGCTTGGCA . 152.0 58.0 89.0 0.0 . 71 . . . none . . PASS Atlas-SNP ATCAY 85300 hgsc.bcm.edu hg19 19 3907799 3907799 + Silent SNP G G C rs373080859 alternate_allele TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . ATCAY NM_033064 exon5 c.G426C p.T142T CGGCACGACGGAG . 257.0 114.0 208.0 0.0 . 84 . . . alt . . PASS Atlas-SNP BRD4 23476 hgsc.bcm.edu hg19 19 15354087 15354087 + Silent SNP G G A novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . BRD4 NM_058243 exon14 c.C2793T p.Y931Y CTGCAGGTACAGC . 32.0 18.0 44.0 0.0 . 172 . . . none . . PASS Atlas-SNP GYS1 2997 hgsc.bcm.edu hg19 19 49489290 49489290 + Silent SNP G G A novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . GYS1 NM_002103 exon4 c.C495T p.F165F TGCCAGGAACTGT . 43.0 14.0 46.0 0.0 . 59 . . . none . . PASS Atlas-SNP PPFIA3 8541 hgsc.bcm.edu hg19 19 49652538 49652538 + Missense_Mutation SNP T T G novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . PPFIA3 NM_003660 exon27 c.T3310G p.F1104V AAGGAATTCAGCA . 167.0 68.0 168.0 0.0 . 71 . . . none . . PASS Atlas-SNP TSHZ2 128553 hgsc.bcm.edu hg19 20 51871547 51871547 + Missense_Mutation SNP T T G novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . TSHZ2 NM_173485 exon2 c.T1550G p.L517W ACATTTTGAAATC . 126.0 66.0 98.0 0.0 . 209 . . . none . . PASS Atlas-SNP NELFCD 51497 hgsc.bcm.edu hg19 20 57568776 57568776 + Missense_Mutation SNP A A T novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . . NM_198976 exon13 c.A1592T p.K531M TGGAGAAGCTGGA . 74.0 35.0 80.0 0.0 . . . . . none . . PASS Atlas-SNP RBBP8NL 140893 hgsc.bcm.edu hg19 20 60992327 60992327 + Silent SNP C C A novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . . NM_080833 exon4 c.G153T p.R51R CTGTTCCCGGAGC . 46.0 17.0 59.0 0.0 . . . . . none . . PASS Atlas-SNP PTK6 5753 hgsc.bcm.edu hg19 20 62168575 62168575 + Silent SNP C C T rs370151198 TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . PTK6 NM_001256358 exon1 c.G93A p.A31A GTCCCCCGCGCGG . 69.0 20.0 76.0 0.0 . 33 . . . weak . . PASS Atlas-SNP ZBTB21 49854 hgsc.bcm.edu hg19 21 43411959 43411959 + Missense_Mutation SNP A A G novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . . NM_001098402 exon3 c.T2246C p.V749A GGGCAGACGGCCG . 79.0 38.0 59.0 0.0 . . . . . none . . PASS Atlas-SNP PIM3 415116 hgsc.bcm.edu hg19 22 50354605 50354605 + Missense_Mutation SNP T T C novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . PIM3 NM_001001852 exon1 c.T10C p.S4P CTGCTCTCCAAGT . 16.0 8.0 11.0 0.0 . 15 . . . none . . PASS Atlas-SNP MAGEB16 139604 hgsc.bcm.edu hg19 X 35821036 35821036 + Silent SNP C C T novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . MAGEB16 NM_001099921 exon2 c.C723T p.F241F GCACTTCATCTTT . 309.0 142.0 255.0 0.0 . 64 . . . none . . PASS Atlas-SNP AR 367 hgsc.bcm.edu hg19 X 66765152 66765152 + Missense_Mutation SNP T T A novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . AR NM_000044 exon1 c.T164A p.L55Q GTTTGCTGCTGCT . 278.0 13.0 217.0 0.0 . 249 . . . none . . PASS Atlas-SNP ATP7A 538 hgsc.bcm.edu hg19 X 77254011 77254011 + Missense_Mutation SNP C C T novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . ATP7A NM_000052 exon5 c.C1373T p.S458L AGCCTTCATCGGA . 286.0 115.0 293.0 0.0 . 248 . . . none . . PASS Atlas-SNP SEC24B 10427 hgsc.bcm.edu hg19 4 110433149 110433169 + In_Frame_Del DEL TGCCGATCCTGTCGAACGTAT TGCCGATCCTGTCGAACGTAT - novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 TGCCGATCCTGTCGAACGTAT TGCCGATCCTGTCGAACGTAT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . SEC24B NM_006323 exon9 c.1812_1832del p.604_611del . . 70.0 15.0 104.0 0.0 . 186 . 0.214286 0 none . . PASS Atlas-Indel,Pindel ST8SIA2 8128 hgsc.bcm.edu hg19 15 92981704 92981704 + Frame_Shift_Del DEL A A - novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . ST8SIA2 NM_006011 exon4 c.411delG p.Q137fs . . 155.0 54.0 123.0 0.0 . 41 . 0.348387 0 none . . PASS Atlas-Indel,Pindel PCMT1 5110 hgsc.bcm.edu hg19 6 150070882 150070883 + In_Frame_Ins INS - - GCGGCA novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . PCMT1 NM_001252050 exon1 c.19_20insGCGGCA p.G7delinsGGS . . 47.0 13.0 28.0 0.0 . 27 . 0.276596 0 none . . PASS Atlas-Indel,Pindel FNIP2 57600 hgsc.bcm.edu hg19 4 159753052 159753054 + In_Frame_Del DEL ATG ATG - novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 ATG ATG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . FNIP2 NM_020840 exon4 c.420_422del p.140_141del . . 151.0 60.0 135.0 0.0 . 90 . 0.397351 0 none . . PASS Atlas-Indel,Pindel ACVR2A 92 hgsc.bcm.edu hg19 2 148683732 148683732 + Splice_Site DEL T T - novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c .,1 ACVR2A NM_001616 exon10 c.1347+1T>- . . . 70.0 22.0 66.0 0.0 . 125 . 0.314286 0 none . . PASS Atlas-Indel,Pindel C11orf63 79864 hgsc.bcm.edu hg19 11 122830003 122830007 + Frame_Shift_Del DEL GACTC GACTC - novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 GACTC GACTC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . C11orf63 NM_024806 exon9 c.2186_2190del p.729_730del . . 289.0 118.0 283.0 0.0 . 116 . 0.408305 0 none . . PASS Atlas-Indel,Pindel ADAMTS7 11173 hgsc.bcm.edu hg19 15 79088990 79088991 + Frame_Shift_Ins INS - - T novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . ADAMTS7 NM_014272 exon4 c.761_762insA p.M254fs . . 75.0 34.0 70.0 0.0 . 142 . 0.453333 0 none . . PASS Atlas-Indel,Pindel ARHGAP32 9743 hgsc.bcm.edu hg19 11 128840378 128840379 + Frame_Shift_Ins INS - - AGCTCAAAGA novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . ARHGAP32 NM_001142685 exon22 c.4688_4689insTCTTTGAGCT p.S1563fs . . 133.0 21.0 135.0 0.0 . 307 . 0.157895 0 none . . PASS Atlas-Indel,Pindel FLNB 2317 hgsc.bcm.edu hg19 3 58104719 58104719 + Splice_Site DEL A A - novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . FLNB NM_001164317 exon19 c.2863+2A>- . . . 210.0 114.0 134.0 0.0 . 430 . 0.542857 0 none . . PASS Atlas-Indel,Pindel OR7A10 390892 hgsc.bcm.edu hg19 19 14952156 14952157 + Frame_Shift_Ins INS - - A novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . OR7A10 NM_001005190 exon1 c.534_535insT p.F178fs . . 181.0 68.0 140.0 0.0 . 33 . 0.375691 0 none . . PASS Atlas-Indel,Pindel ATP6V1C2 245973 hgsc.bcm.edu hg19 2 10922432 10922436 + Frame_Shift_Del DEL GCGTT GCGTT - novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 GCGTT GCGTT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . ATP6V1C2 NM_001039362 exon13 c.1124_1128del p.375_376del . . 103.0 32.0 123.0 0.0 . 73 . 0.31068 0 none . . PASS Atlas-Indel,Pindel PTH1R 5745 hgsc.bcm.edu hg19 3 46935466 46935467 + Frame_Shift_Ins INS - - A novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . PTH1R NM_001184744 exon3 c.145_146insA p.E49fs . . 281.0 86.0 190.0 0.0 . 49 . 0.306 . none . . PASS Pindel STEAP4 79689 hgsc.bcm.edu hg19 7 87913338 87913349 + In_Frame_Del DEL TGTGGATTGCTA TGTGGATTGCTA - novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 TGTGGATTGCTA TGTGGATTGCTA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . STEAP4 NM_001205315 exon3 c.237_248del p.79_83del . . 131.0 18.0 80.0 0.0 . 54 . 0.137 . none . . PASS Pindel ZNF597 146434 hgsc.bcm.edu hg19 16 3487452 3487453 + Frame_Shift_Ins INS - - A novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . ZNF597 NM_152457 exon4 c.247_248insT p.A83fs . . 121.0 43.0 91.0 0.0 . 41 . 0.355 . none . . PASS Pindel MORF4L2 9643 hgsc.bcm.edu hg19 X 102931211 102931211 + Frame_Shift_Del DEL G G - novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . MORF4L2 NM_001142422 exon5 c.746delT p.L249fs . . 292.0 76.0 234.0 0.0 . 35 . 0.260 . none . . PASS Pindel OR4F5 79501 hgsc.bcm.edu hg19 1 69618 69629 + In_Frame_Del DEL GGTAATCAAACT GGTAATCAAACT - novel TCGA-UZ-A9Q1-01A-11D-A42J-10 TCGA-UZ-A9Q1-10A-01D-A42M-10 GGTAATCAAACT GGTAATCAAACT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 69f0f324-fc06-44ab-b056-8fb3fb4706ae 1a85c2bb-8b95-429a-b782-c05a44345d4c . OR4F5 NM_001005484 exon1 c.527_538del p.176_180del . . 365.0 20.0 276.0 0.0 . 7 . 0.055 . none . . PASS Pindel