Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
USP24	23358	hgsc.bcm.edu	hg19	1	55603533	55603533	+	Silent	SNP	G	G	T	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	.	USP24	NM_015306	exon27	c.C2973A	p.A991A	CTGCTTGGCTATT	.	187.0	23.0	172.0	0.0	.	323	.	.	.	none	.	.	PASS	Atlas-SNP
SYPL2	284612	hgsc.bcm.edu	hg19	1	110009739	110009739	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	.	SYPL2	NM_001040709	exon2	c.T113C	p.I38T	GCTTCATCAAAGT	.	93.0	9.0	85.0	0.0	.	41	.	.	.	none	.	.	PASS	Atlas-SNP
AHCTF1	25909	hgsc.bcm.edu	hg19	1	247063492	247063492	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	.	AHCTF1	NM_015446	exon10	c.T1334C	p.V445A	CTTACAACAGACT	.	539.0	103.0	463.0	0.0	.	187	.	.	.	none	.	.	PASS	Atlas-SNP
OR2L8	391190	hgsc.bcm.edu	hg19	1	248112664	248112664	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	.	OR2L8	NM_001001963	exon1	c.C505T	p.R169X	TATTGCCGATCCA	.	85.0	6.0	67.0	0.0	.	92	.	.	.	none	.	.	PASS	Atlas-SNP
USP34	9736	hgsc.bcm.edu	hg19	2	61483604	61483604	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	.	USP34	NM_014709	exon48	c.G6136C	p.D2046H	CTTCATCAAGAGA	.	442.0	30.0	411.0	0.0	.	334	.	.	.	none	.	.	PASS	Atlas-SNP
CEP68	23177	hgsc.bcm.edu	hg19	2	65299733	65299733	+	Silent	SNP	C	C	A	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	.	CEP68	NM_015147	exon3	c.C1503A	p.S501S	AGGATCCATTTCT	.	93.0	9.0	116.0	0.0	.	69	.	.	.	none	.	.	PASS	Atlas-SNP
MAT2A	4144	hgsc.bcm.edu	hg19	2	85768828	85768828	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	.	MAT2A	NM_005911	exon4	c.A365G	p.H122R	GTGTTCATCTTGA	.	133.0	22.0	116.0	0.0	.	23	.	.	.	none	.	.	PASS	Atlas-SNP
IMMT	10989	hgsc.bcm.edu	hg19	2	86385801	86385801	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	.	IMMT	NM_006839	exon10	c.A1076G	p.H359R	AGCTCATGATACT	.	107.0	15.0	120.0	0.0	.	65	.	.	.	none	.	.	PASS	Atlas-SNP
INPP4A	3631	hgsc.bcm.edu	hg19	2	99156012	99156012	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	INPP4A_ENST00000409540,caecum,carcinoma,0,3	INPP4A	NM_004027	exon10	c.G692T	p.R231L	TCTGCCGCATGTA	.	59.0	7.0	60.0	0.0	.	205	.	.	.	none	.	.	PASS	Atlas-SNP
CFLAR	8837	hgsc.bcm.edu	hg19	2	202005084	202005084	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	.	CFLAR	NM_001202516	exon5	c.A528T	p.Q176H	AGTTCAAGGAGCA	.	371.0	36.0	283.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
KANSL1L	151050	hgsc.bcm.edu	hg19	2	210894559	210894559	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	.	.	NM_152519	exon10	c.A2239C	p.N747H	AAACGTTGACATT	.	91.0	13.0	115.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
VHL	7428	hgsc.bcm.edu	hg19	3	10183797	10183797	+	Missense_Mutation	SNP	T	T	A	rs5030807	bycluster	TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	VHL,NS,carcinoma,0,23	VHL	NM_198156	exon1	c.T266A	p.L89H	TATGGCTCAACTT	.	46.0	7.0	87.0	1.0	.	2192	.	.	.	weak	T|1.000	.	PASS	Atlas-SNP
TRIM71	131405	hgsc.bcm.edu	hg19	3	32859580	32859580	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	.	TRIM71	NM_001039111	exon1	c.C8T	p.S3L	TGGCTTCGTTCCC	.	59.0	12.0	65.0	0.0	.	73	.	.	.	none	.	.	PASS	Atlas-SNP
TRIM71	131405	hgsc.bcm.edu	hg19	3	32859581	32859581	+	Silent	SNP	G	G	T	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	.	TRIM71	NM_001039111	exon1	c.G9T	p.S3S	GGCTTCGTTCCCC	.	56.0	13.0	64.0	0.0	.	73	.	.	.	none	.	.	PASS	Atlas-SNP
OSBPL11	114885	hgsc.bcm.edu	hg19	3	125282684	125282684	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	.	OSBPL11	NM_022776	exon7	c.C872G	p.T291R	ATTGTCGTTCCTG	.	53.0	9.0	46.0	0.0	.	64	.	.	.	none	.	.	PASS	Atlas-SNP
CAMK2D	817	hgsc.bcm.edu	hg19	4	114378666	114378666	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	.	CAMK2D	NM_172114	exon18	c.C1300T	p.H434Y	CCAGATGTACATG	.	164.0	15.0	114.0	0.0	.	55	.	.	.	none	.	.	PASS	Atlas-SNP
ZFYVE16	9765	hgsc.bcm.edu	hg19	5	79745509	79745509	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	.	ZFYVE16	NM_001105251	exon9	c.T3203C	p.L1068P	ATCTACTCGTGAA	.	222.0	34.0	172.0	0.0	.	100	.	.	.	none	.	.	PASS	Atlas-SNP
PCDHB7	56129	hgsc.bcm.edu	hg19	5	140554081	140554081	+	Silent	SNP	C	C	T	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	.	PCDHB7	NM_018940	exon1	c.C1665T	p.N555N	CGCCAACGACAAC	.	115.0	10.0	95.0	0.0	.	231	.	.	.	none	.	.	PASS	Atlas-SNP
DPCR1	135656	hgsc.bcm.edu	hg19	6	30919864	30919864	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	.	DPCR1	NM_080870	exon2	c.C3623G	p.P1208R	AAAAGCCTACAGA	.	128.0	19.0	91.0	0.0	.	99	.	.	.	none	.	.	PASS	Atlas-SNP
PNRC1	10957	hgsc.bcm.edu	hg19	6	89793765	89793765	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	.	PNRC1	NM_006813	exon2	c.T834G	p.N278K	GGAAAATTATGCT	.	298.0	32.0	281.0	0.0	.	17	.	.	.	none	.	.	PASS	Atlas-SNP
USP42	84132	hgsc.bcm.edu	hg19	7	6193668	6193668	+	Missense_Mutation	SNP	C	C	G	rs377506977		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	.	USP42	NM_032172	exon15	c.C2483G	p.A828G	GCGATGCGAGCCC	.	97.0	10.0	94.0	0.0	.	138	.	.	.	weak	.	.	PASS	Atlas-SNP
GPR141	353345	hgsc.bcm.edu	hg19	7	37780739	37780739	+	Silent	SNP	C	C	T	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	.	GPR141	NM_181791	exon1	c.C744T	p.Y248Y	CTATTACTTGAAT	.	92.0	12.0	104.0	0.0	.	79	.	.	.	none	.	.	PASS	Atlas-SNP
YAE1D1	57002	hgsc.bcm.edu	hg19	7	39612136	39612136	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	.	YAE1D1	NM_020192	exon3	c.G512C	p.C171S	AAAACTGTAGCAA	.	139.0	16.0	180.0	0.0	.	2	.	.	.	none	.	.	PASS	Atlas-SNP
ABCA13	154664	hgsc.bcm.edu	hg19	7	48317734	48317734	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	.	ABCA13	NM_152701	exon18	c.C6943T	p.Q2315X	CTGGATCAATTTC	.	435.0	43.0	366.0	0.0	.	1192	.	.	.	none	.	.	PASS	Atlas-SNP
EPHB4	2050	hgsc.bcm.edu	hg19	7	100414914	100414914	+	Silent	SNP	C	C	A	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	.	EPHB4	NM_004444	exon8	c.G1488T	p.G496G	CTTCAGCCCCCGC	.	75.0	13.0	59.0	0.0	.	106	.	.	.	none	.	.	PASS	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	hg19	7	100684959	100684959	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	.	MUC17	NM_001040105	exon3	c.C10262T	p.T3421I	TTTCAACAACTCC	.	113.0	13.0	98.0	0.0	.	804	.	.	.	none	.	.	PASS	Atlas-SNP
CSMD1	64478	hgsc.bcm.edu	hg19	8	2910077	2910077	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	.	CSMD1	NM_033225	exon50	c.G7567T	p.E2523X	AGCCCTCATGACA	.	129.0	20.0	135.0	0.0	.	1469	.	.	.	none	.	.	PASS	Atlas-SNP
PTK2B	2185	hgsc.bcm.edu	hg19	8	27315863	27315863	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	.	PTK2B	NM_173174	exon36	c.A2867T	p.K956M	TCAACAAGATGCG	.	166.0	19.0	116.0	0.0	.	304	.	.	.	none	.	.	PASS	Atlas-SNP
ZFHX4	79776	hgsc.bcm.edu	hg19	8	77775451	77775451	+	Silent	SNP	T	T	A	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	ZFHX4,colon,carcinoma,0,2	ZFHX4	NM_024721	exon11	c.T9501A	p.P3167P	ACCACCTCCTCCT	.	83.0	5.0	75.0	1.0	.	878	.	.	.	none	.	.	PASS	Atlas-SNP
FKTN	2218	hgsc.bcm.edu	hg19	9	108397413	108397413	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	.	FKTN	NM_006731	exon10	c.C1254A	p.Y418X	CGAATACATTGAA	.	153.0	14.0	140.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
TOR1B	27348	hgsc.bcm.edu	hg19	9	132569640	132569640	+	Silent	SNP	C	C	T	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	.	TOR1B	NM_014506	exon3	c.C639T	p.L213L	CTTTCTCAGGTCA	.	85.0	7.0	95.0	0.0	.	20	.	.	.	none	.	.	PASS	Atlas-SNP
ERCC6	2074	hgsc.bcm.edu	hg19	10	50708590	50708590	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	.	ERCC6	NM_000124	exon7	c.T1679G	p.V560G	CTGTAATTTGAAC	.	62.0	9.0	58.0	0.0	.	162	.	.	.	none	.	.	PASS	Atlas-SNP
LRRC32	2615	hgsc.bcm.edu	hg19	11	76371485	76371485	+	Silent	SNP	G	G	A	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	.	LRRC32	NM_005512	exon3	c.C1152T	p.A384A	CCCCAGGGCTCTG	.	125.0	7.0	112.0	0.0	.	74	.	.	.	none	.	.	PASS	Atlas-SNP
ATM	472	hgsc.bcm.edu	hg19	11	108143336	108143336	+	Splice_Site	SNP	T	T	A	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	ATM_ENST00000278616,caecum,carcinoma,0,3	ATM	NM_000051	exon21	c.3153+2T>A	.	TTGAGGTGAGTTT	.	237.0	24.0	199.0	0.0	.	1657	.	.	.	none	.	.	PASS	Atlas-SNP
HNRNPA1	3178	hgsc.bcm.edu	hg19	12	54675583	54675583	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	.	HNRNPA1	NM_002136	exon3	c.T137C	p.M46T	AGGTAATGAGAGA	.	131.0	16.0	163.0	0.0	.	72	.	.	.	none	.	.	PASS	Atlas-SNP
GNPTAB	79158	hgsc.bcm.edu	hg19	12	102147264	102147264	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	.	GNPTAB	NM_024312	exon19	c.C3488A	p.T1163K	TTCACTGTCTGAG	.	134.0	14.0	110.0	0.0	.	120	.	.	.	none	.	.	PASS	Atlas-SNP
MYH7	4625	hgsc.bcm.edu	hg19	14	23902759	23902759	+	Silent	SNP	G	G	T	rs370743876	alternate_allele	TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	MYH7,colon,carcinoma,0,1	MYH7	NM_000257	exon3	c.C183A	p.A61A	GGTCTCGGCAGTG	.	42.0	2.0	62.0	0.0	.	349	.	.	.	alt	.	.	PASS	Atlas-SNP
FAM98B	283742	hgsc.bcm.edu	hg19	15	38776812	38776812	+	Silent	SNP	T	T	A	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	.	FAM98B	NM_173611	exon8	c.T1254A	p.G418G	AGGTGGTGGTGGT	.	82.0	7.0	62.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
FAM98B	283742	hgsc.bcm.edu	hg19	15	38776815	38776815	+	Silent	SNP	T	T	A	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	.	FAM98B	NM_173611	exon8	c.T1257A	p.G419G	TGGTGGTGGTGGT	.	76.0	10.0	59.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
PDE8A	5151	hgsc.bcm.edu	hg19	15	85652313	85652313	+	Silent	SNP	A	A	C	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	.	PDE8A	NM_002605	exon12	c.A1066C	p.R356R	GACAGGAGAAAAG	.	454.0	45.0	375.0	0.0	.	50	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF771	51333	hgsc.bcm.edu	hg19	16	30419477	30419477	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	.	ZNF771	NM_001142305	exon2	c.G103A	p.E35K	AAGTATGAGGTGG	.	156.0	10.0	119.0	0.0	.	1	.	.	.	none	.	.	PASS	Atlas-SNP
NEURL4	84461	hgsc.bcm.edu	hg19	17	7225239	7225239	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	.	NEURL4	NM_032442	exon17	c.A2816T	p.Y939F	TGAGCATAGCCAG	.	34.0	4.0	22.0	0.0	.	192	.	.	.	none	.	.	PASS	Atlas-SNP
MED1	5469	hgsc.bcm.edu	hg19	17	37595435	37595435	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	.	MED1	NM_004774	exon6	c.G411T	p.E137D	TACAAGCTCCGGA	.	63.0	7.0	58.0	0.0	.	123	.	.	.	none	.	.	PASS	Atlas-SNP
TOB1	10140	hgsc.bcm.edu	hg19	17	48940877	48940877	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	.	TOB1	NM_005749	exon2	c.A502G	p.M168V	GGGGCATGAAGGT	.	143.0	19.0	113.0	0.0	.	40	.	.	.	none	.	.	PASS	Atlas-SNP
HELZ	9931	hgsc.bcm.edu	hg19	17	65163789	65163789	+	Silent	SNP	A	A	T	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	.	HELZ	NM_014877	exon14	c.T1554A	p.S518S	ATCTTCAGAAAGT	.	308.0	41.0	247.0	0.0	.	160	.	.	.	none	.	.	PASS	Atlas-SNP
USH1G	124590	hgsc.bcm.edu	hg19	17	72915897	72915897	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	.	USH1G	NM_173477	exon2	c.G1034A	p.R345Q	TGCAGCCGACCCC	.	141.0	16.0	117.0	0.0	.	40	.	.	.	none	.	.	PASS	Atlas-SNP
ABCA7	10347	hgsc.bcm.edu	hg19	19	1054009	1054009	+	Silent	SNP	C	C	T	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	.	ABCA7	NM_019112	exon26	c.C3477T	p.G1159G	AGATGGCAGCTGC	.	150.0	6.0	136.0	0.0	.	174	.	.	.	none	.	.	PASS	Atlas-SNP
COL5A3	50509	hgsc.bcm.edu	hg19	19	10112281	10112281	+	Silent	SNP	A	A	G	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	.	COL5A3	NM_015719	exon8	c.T1029C	p.D343D	TTCTTCATCCTCC	.	122.0	10.0	121.0	0.0	.	243	.	.	.	none	.	.	PASS	Atlas-SNP
RYR1	6261	hgsc.bcm.edu	hg19	19	38997149	38997149	+	Silent	SNP	G	G	A	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	.	RYR1	NM_001042723	exon56	c.G8655A	p.T2885T	CAACACGTGGGGA	.	175.0	15.0	182.0	0.0	.	708	.	.	.	none	.	.	PASS	Atlas-SNP
NUMBL	9253	hgsc.bcm.edu	hg19	19	41192843	41192843	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	.	NUMBL	NM_004756	exon2	c.C82A	p.P28T	CTGGGGGCCCCGG	.	148.0	24.0	166.0	0.0	.	49	.	.	.	none	.	.	PASS	Atlas-SNP
GEMIN7	79760	hgsc.bcm.edu	hg19	19	45593461	45593461	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	GEMIN7,right_lower_lobe,carcinoma,0,1	GEMIN7	NM_024707	exon3	c.G89T	p.R30L	ATGGACGCAGAGC	.	71.0	3.0	66.0	0.0	.	18	.	.	.	none	.	.	PASS	Atlas-SNP
TP53RK	112858	hgsc.bcm.edu	hg19	20	45315710	45315710	+	Silent	SNP	C	C	T	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	.	TP53RK	NM_033550	exon2	c.G444A	p.Q148Q	CAAAACCTGCCCA	.	149.0	15.0	92.0	0.0	.	13	.	.	.	none	.	.	PASS	Atlas-SNP
DOK5	55816	hgsc.bcm.edu	hg19	20	53205106	53205106	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	.	DOK5	NM_018431	exon3	c.G259A	p.D87N	AATGACGATACCT	.	186.0	20.0	159.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
DDX17	10521	hgsc.bcm.edu	hg19	22	38882032	38882032	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	.	DDX17	NM_001098504	exon13	c.C2104A	p.P702T	CCGGAGGCTGTGC	.	128.0	14.0	99.0	0.0	.	73	.	.	.	none	.	.	PASS	Atlas-SNP
RBM10	8241	hgsc.bcm.edu	hg19	X	47044733	47044733	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	.	RBM10	NM_001204468	exon19	c.G2328C	p.M776I	CAGCATGGATCTC	.	72.0	18.0	77.0	0.0	.	117	.	.	.	none	.	.	PASS	Atlas-SNP
CLIP2	7461	hgsc.bcm.edu	hg19	7	73791021	73791021	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	.	CLIP2	NM_003388	exon10	c.2289delG	p.M763fs	.	.	185.0	16.0	204.0	0.0	.	134	.	0.0864865	0	none	.	.	PASS	Atlas-INDEL
BRAF	673	hgsc.bcm.edu	hg19	7	140507773	140507774	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	.	BRAF	NM_004333	exon5	c.698_699insA	p.T233fs	.	.	90.0	10.0	90.0	0.0	.	36346	.	0.111111	0	none	.	.	PASS	Atlas-INDEL
SPOCK3	50859	hgsc.bcm.edu	hg19	4	167810344	167810344	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	.	SPOCK3	NM_016950	exon7	c.536delG	p.C179fs	.	.	164.0	27.0	131.0	0.0	.	90	.	0.164634	0	none	.	.	PASS	Atlas-Indel,Pindel
S1PR3	1903	hgsc.bcm.edu	hg19	9	91616360	91616361	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	.	S1PR3	NM_005226	exon2	c.244_245del	p.82_82del	.	.	138.0	14.0	114.0	0.0	.	49	.	0.101449	0	none	.	.	PASS	Atlas-Indel,Pindel
SPTA1	6708	hgsc.bcm.edu	hg19	1	158615036	158615047	+	In_Frame_Del	DEL	TCATCTCTCTCT	TCATCTCTCTCT	-	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	TCATCTCTCTCT	TCATCTCTCTCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	.	SPTA1	NM_003126	exon29	c.4126_4137del	p.1376_1379del	.	.	78.0	13.0	95.0	0.0	.	720	.	0.166667	0	none	.	.	PASS	Atlas-Indel,Pindel
RNF39	80352	hgsc.bcm.edu	hg19	6	30039171	30039172	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	.	RNF39	NM_025236	exon4	c.980_981insA	p.R327fs	.	.	61.0	10.0	67.0	0.0	.	27	.	0.163934	0	none	.	.	PASS	Atlas-INDEL
GNA13	10672	hgsc.bcm.edu	hg19	17	63049759	63049759	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	.	GNA13	NM_006572	exon2	c.372delG	p.S124fs	.	.	122.0	12.0	106.0	0.0	.	69	.	0.0983607	0	none	.	.	PASS	Atlas-INDEL
MNDA	4332	hgsc.bcm.edu	hg19	1	158815387	158815387	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	MNDA,NS,carcinoma,0,1	MNDA	NM_002432	exon5	c.580delA	p.T194fs	.	.	338.0	31.0	255.0	0.0	.	147	.	0.091716	0	none	.	.	PASS	Atlas-Indel,Pindel
TARBP1	6894	hgsc.bcm.edu	hg19	1	234541785	234541786	+	Frame_Shift_Ins	INS	-	-	AA	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	.	TARBP1	NM_005646	exon24	c.3853_3854insTT	p.S1285fs	.	.	383.0	46.0	324.0	0.0	.	111	.	0.120104	0	none	.	.	PASS	Atlas-Indel,Pindel
ERRFI1	54206	hgsc.bcm.edu	hg19	1	8073471	8073472	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	.	ERRFI1	NM_018948	exon4	c.1188_1189insT	p.L396fs	.	.	181.0	21.0	161.0	0.0	.	42	.	0.116022	0	none	.	.	PASS	Atlas-Indel,Pindel
ZNF226	7769	hgsc.bcm.edu	hg19	19	44680079	44680102	+	In_Frame_Del	DEL	AAATCTTATAGACCCAATGATTAT	AAATCTTATAGACCCAATGATTAT	-	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	AAATCTTATAGACCCAATGATTAT	AAATCTTATAGACCCAATGATTAT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	.	.	NM_001032372	exon6	c.663_686del	p.221_229del	.	.	87.0	10.0	75.0	0.0	.	.	.	0.115	.	none	.	.	PASS	Pindel
CLIP2	7461	hgsc.bcm.edu	hg19	7	73791021	73791022	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-WN-A9G9-01A-12D-A36X-10	TCGA-WN-A9G9-10A-01D-A370-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e78e2342-adb4-4c7b-96ae-4e2ccb668d49	394f018a-b0e0-40a9-afd2-2a1a4f552485	.	CLIP2	NM_003388	exon10	c.2289_2290del	p.763_764del	.	.	189.0	11.0	206.0	0.0	.	134	.	0.058	.	none	.	.	PASS	Pindel