Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm ESPN 83715 hgsc.bcm.edu hg19 1 6517308 6517308 + Missense_Mutation SNP A A G novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . ESPN NM_031475 exon11 c.A2390G p.K797R GGAAGAAGCTGGA . 176.0 48.0 213.0 0.0 . 32 . . . none . . PASS Atlas-SNP SPEN 23013 hgsc.bcm.edu hg19 1 16199544 16199544 + Missense_Mutation SNP G G T novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . SPEN NM_015001 exon2 c.G317T p.G106V TTTCTGGGTTCAG . 119.0 30.0 148.0 0.0 . 374 . . . none . . PASS Atlas-SNP AHDC1 27245 hgsc.bcm.edu hg19 1 27874121 27874121 + Silent SNP G G A novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . AHDC1 NM_001029882 exon6 c.C4506T p.A1502A GTGAGGGGCACTG . 103.0 25.0 111.0 0.0 . 98 . . . none . . PASS Atlas-SNP C1orf123 54987 hgsc.bcm.edu hg19 1 53684086 53684086 + Missense_Mutation SNP C C G novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . C1orf123 NM_017887 exon4 c.G229C p.E77Q ACCTACCGATGGA . 96.0 34.0 93.0 0.0 . 9 . . . none . . PASS Atlas-SNP ATXN7L2 127002 hgsc.bcm.edu hg19 1 110031671 110031671 + Missense_Mutation SNP G G A novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . ATXN7L2 NM_153340 exon7 c.G986A p.S329N CCAGCAGCACCTT . 85.0 24.0 87.0 0.0 . 60 . . . none . . PASS Atlas-SNP NUP210L 91181 hgsc.bcm.edu hg19 1 154099879 154099879 + Missense_Mutation SNP G G A novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . NUP210L NM_001159484 exon9 c.C1093T p.P365S TTCCAGGTTGGAC . 78.0 14.0 106.0 0.0 . 181 . . . none . . PASS Atlas-SNP KCNN3 3782 hgsc.bcm.edu hg19 1 154842333 154842333 + Silent SNP C C T novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . KCNN3 NM_001204087 exon1 c.G108A p.Q36Q CTGTTGCTGCTGC . 93.0 6.0 104.0 0.0 . 141 . . . none . . PASS Atlas-SNP F5 2153 hgsc.bcm.edu hg19 1 169528453 169528453 + Missense_Mutation SNP C C A novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 F5,NS,carcinoma,0,1 F5 NM_000130 exon5 c.G668T p.S223I CTCCAGCTCTTGC . 77.0 30.0 98.0 0.0 . 301 . . . none . . PASS Atlas-SNP LAMC1 3915 hgsc.bcm.edu hg19 1 183072766 183072766 + Missense_Mutation SNP A A G novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . LAMC1 NM_002293 exon2 c.A722G p.Q241R TGCTGCAGGTAAA . 96.0 34.0 99.0 0.0 . 176 . . . none . . PASS Atlas-SNP PGBD5 79605 hgsc.bcm.edu hg19 1 230486768 230486768 + Missense_Mutation SNP T T G novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . PGBD5 NM_001258311 exon3 c.A830C p.K277T TTCCTCTTTCGCA . 55.0 17.0 72.0 0.0 . 73 . . . none . . PASS Atlas-SNP ASAP2 8853 hgsc.bcm.edu hg19 2 9496455 9496455 + Silent SNP C C T novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . ASAP2 NM_001135191 exon14 c.C1308T p.C436C CGTCTGCTGTGAC . 108.0 31.0 111.0 0.0 . 91 . . . none . . PASS Atlas-SNP ITGB1BP1 9270 hgsc.bcm.edu hg19 2 9547719 9547719 + Missense_Mutation SNP C C A novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . ITGB1BP1 NM_004763 exon6 c.G390T p.L130F CCTGTGCAAAACA . 64.0 23.0 62.0 0.0 . 13 . . . none . . PASS Atlas-SNP TTC32 130502 hgsc.bcm.edu hg19 2 20101507 20101507 + Silent SNP G G T rs138752655 bycluster;alternate_allele TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . TTC32 NM_001008237 exon1 c.C109A p.R37R CGCACCGGCGAAT . 42.0 15.0 57.0 0.0 . 13 . . . alt G|1.000;A|0.000 . PASS Atlas-SNP ALMS1 7840 hgsc.bcm.edu hg19 2 73613036 73613036 + Missense_Mutation SNP G G C novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . ALMS1 NM_015120 exon1 c.G40C p.E14Q CTGGAGGAGGAGG . 243.0 12.0 203.0 0.0 . 384 . . . none . . PASS Atlas-SNP ALMS1 7840 hgsc.bcm.edu hg19 2 73613065 73613065 + Silent SNP G G A novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . ALMS1 NM_015120 exon1 c.G69A p.E23E GGAGGAGGAGGAA . 525.0 43.0 527.0 0.0 . 384 . . . none . . PASS Atlas-SNP SEMA4F 10505 hgsc.bcm.edu hg19 2 74902678 74902678 + Missense_Mutation SNP C C T novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . SEMA4F NM_004263 exon11 c.C1399T p.R467W GCAGTGCGGATCG . 98.0 24.0 108.0 0.0 . 89 . . . none . . PASS Atlas-SNP SLC20A1 6574 hgsc.bcm.edu hg19 2 113405235 113405235 + Missense_Mutation SNP T T G novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . SLC20A1 NM_005415 exon4 c.T481G p.S161A GTGATGTCTTGGT . 95.0 31.0 125.0 0.0 . 59 . . . none . . PASS Atlas-SNP INHBB 3625 hgsc.bcm.edu hg19 2 121107030 121107030 + Silent SNP C C G rs201383879 by1000genomes;alternate_allele TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . INHBB NM_002193 exon2 c.C804G p.G268G CCCAGGCGAAGAG . 143.0 38.0 152.0 0.0 . 29 . . . alt C|1.000;T|0.000 . PASS Atlas-SNP ANKAR 150709 hgsc.bcm.edu hg19 2 190557049 190557049 + Missense_Mutation SNP T T C novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . ANKAR NM_144708 exon4 c.T1108C p.F370L CAGAATTTTCACT . 206.0 48.0 206.0 0.0 . 184 . . . none . . PASS Atlas-SNP FASTKD2 22868 hgsc.bcm.edu hg19 2 207631966 207631966 + Missense_Mutation SNP C C A novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . FASTKD2 NM_001136193 exon2 c.C549A p.N183K TAGCAACTATTTC . 68.0 23.0 103.0 0.0 . 49 . . . none . . PASS Atlas-SNP ATG9A 79065 hgsc.bcm.edu hg19 2 220090237 220090237 + Silent SNP G G A novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . ATG9A NM_001077198 exon6 c.C270T p.D90D TAGGATGTCATAG . 133.0 38.0 143.0 0.0 . 50 . . . none . . PASS Atlas-SNP CHRND 1144 hgsc.bcm.edu hg19 2 233394851 233394851 + Splice_Site SNP T T C novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . CHRND NM_001256657 exon6 c.775+2T>C . TGACAGTGAGCCT . 38.0 8.0 55.0 0.0 . 67 . . . none . . PASS Atlas-SNP TOP2B 7155 hgsc.bcm.edu hg19 3 25675377 25675377 + Silent SNP T T C novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 TOP2B,right_upper_lobe,carcinoma,0,1 TOP2B NM_001068 exon8 c.A966G p.K322K GAATCCTTTTTCA . 74.0 3.0 77.0 0.0 . 98 . . . none . . PASS Atlas-SNP FYCO1 79443 hgsc.bcm.edu hg19 3 45972569 45972569 + Missense_Mutation SNP C C G novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . FYCO1 NM_024513 exon16 c.G4245C p.Q1415H CTTACACTGATCC . 127.0 48.0 147.0 0.0 . 115 . . . none . . PASS Atlas-SNP SMARCC1 6599 hgsc.bcm.edu hg19 3 47680268 47680268 + Missense_Mutation SNP C C T novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . SMARCC1 NM_003074 exon22 c.G2323A p.G775R CAGCTCCTTCTAC . 97.0 26.0 128.0 0.0 . 85 . . . none . . PASS Atlas-SNP CDC25A 993 hgsc.bcm.edu hg19 3 48200920 48200920 + Missense_Mutation SNP G G A novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . CDC25A NM_001789 exon14 c.C1348T p.R450C CCAGGCGATCTCT . 67.0 21.0 92.0 0.0 . 40 . . . none . . PASS Atlas-SNP PLXNB1 5364 hgsc.bcm.edu hg19 3 48465669 48465669 + Missense_Mutation SNP C C A rs368626600 TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . PLXNB1 NM_001130082 exon3 c.G352T p.V118F CACAGACCCCCTG . 106.0 40.0 123.0 0.0 . 150 . . . weak . . PASS Atlas-SNP COL7A1 1294 hgsc.bcm.edu hg19 3 48619024 48619024 + Silent SNP C C T novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . COL7A1 NM_000094 exon49 c.G4764A p.K1588K GTCTCCCTTGGGG . 90.0 15.0 96.0 0.0 . 320 . . . none . . PASS Atlas-SNP IMPDH2 3615 hgsc.bcm.edu hg19 3 49064477 49064477 + Missense_Mutation SNP T T C novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . IMPDH2 NM_000884 exon6 c.A535G p.M179V TTGTCATTATCTA . 65.0 15.0 58.0 0.0 . 47 . . . none . . PASS Atlas-SNP RNF123 63891 hgsc.bcm.edu hg19 3 49734840 49734840 + Missense_Mutation SNP C C A novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . RNF123 NM_022064 exon5 c.C292A p.H98N CTGGACCACACAG . 63.0 18.0 90.0 0.0 . 100 . . . none . . PASS Atlas-SNP FXR1 8087 hgsc.bcm.edu hg19 3 180688019 180688019 + Silent SNP T T C novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . FXR1 NM_001013438 exon15 c.T1476C p.D492D CACTGATGCCAGC . 138.0 36.0 146.0 0.0 . 75 . . . none . . PASS Atlas-SNP IGF2BP2 10644 hgsc.bcm.edu hg19 3 185364916 185364916 + Missense_Mutation SNP A A G novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . IGF2BP2 NM_006548 exon15 c.T1604C p.L535P TTCTGCAGTTCGT . 49.0 9.0 56.0 0.0 . 69 . . . none . . PASS Atlas-SNP CDH18 1016 hgsc.bcm.edu hg19 5 19473544 19473544 + Missense_Mutation SNP C C T rs376117433 TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . CDH18 NM_004934 exon13 c.G2164A p.E722K CTGCTTCTGCCAG . 108.0 33.0 147.0 0.0 . 561 . . . weak . . PASS Atlas-SNP ZSWIM6 57688 hgsc.bcm.edu hg19 5 60825930 60825930 + Missense_Mutation SNP G G A novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . ZSWIM6 NM_020928 exon8 c.G1889A p.G630E GGGTTGGACATCC . 128.0 35.0 162.0 0.0 . 51 . . . none . . PASS Atlas-SNP CMYA5 202333 hgsc.bcm.edu hg19 5 79031309 79031309 + Missense_Mutation SNP G G A novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . CMYA5 NM_153610 exon2 c.G6721A p.V2241I TCAGAGGTAAAAC . 231.0 60.0 270.0 0.0 . 643 . . . none . . PASS Atlas-SNP COX7C 1350 hgsc.bcm.edu hg19 5 85915264 85915264 + Missense_Mutation SNP G G A novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . COX7C NM_001867 exon2 c.G170A p.R57K TAGTAAGACACCA . 50.0 11.0 69.0 0.0 . 5 . . . none . . PASS Atlas-SNP PCDHB1 29930 hgsc.bcm.edu hg19 5 140431589 140431589 + Silent SNP C C T novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . PCDHB1 NM_013340 exon1 c.C534T p.F178F GTATTTCCACCTG . 89.0 21.0 86.0 0.0 . 148 . . . none . . PASS Atlas-SNP GLRA1 2741 hgsc.bcm.edu hg19 5 151231124 151231124 + Nonsense_Mutation SNP G G A novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . GLRA1 NM_000171 exon7 c.C739T p.Q247X CCATCTGCCGCTC . 123.0 38.0 124.0 0.0 . 61 . . . none . . PASS Atlas-SNP GRIA1 2890 hgsc.bcm.edu hg19 5 153078598 153078598 + Missense_Mutation SNP G G T novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . GRIA1 NM_001258021 exon10 c.G1447T p.A483S ACGAAGGCCTGGA . 79.0 24.0 97.0 0.0 . 321 . . . none . . PASS Atlas-SNP GRM4 2914 hgsc.bcm.edu hg19 6 34100828 34100828 + Missense_Mutation SNP C C A novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . GRM4 NM_001256811 exon2 c.G446T p.R149L ACCACACGTTCAG . 63.0 21.0 85.0 0.0 . 317 . . . none . . PASS Atlas-SNP RSPH10B 222967 hgsc.bcm.edu hg19 7 6797488 6797488 + Missense_Mutation SNP C C A novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 RSPH10B2,NS,carcinoma,0,2 RSPH10B NM_173565 exon3 c.C180A p.D60E AAAAGACCGCCAA . 311.0 61.0 294.0 0.0 . 28 . . . none . . PASS Atlas-SNP HOXA1 3198 hgsc.bcm.edu hg19 7 27135159 27135159 + Nonsense_Mutation SNP G G A novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . HOXA1 NM_005522 exon1 c.C373T p.Q125X CGCACTGGGGGTA . 122.0 25.0 94.0 0.0 . 64 . . . none . . PASS Atlas-SNP TAX1BP1 8887 hgsc.bcm.edu hg19 7 27809433 27809433 + Missense_Mutation SNP C C A novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . TAX1BP1 NM_006024 exon5 c.C592A p.Q198K TGTGACCAACTGC . 320.0 74.0 264.0 0.0 . 71 . . . none . . PASS Atlas-SNP ZNF727 442319 hgsc.bcm.edu hg19 7 63538066 63538066 + Silent SNP A A T novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . ZNF727 NM_001159522 exon4 c.A639T p.S213S GTTCTCAAACCTT . 170.0 79.0 177.0 0.0 . 35 . . . none . . PASS Atlas-SNP GNAI1 2770 hgsc.bcm.edu hg19 7 79840317 79840317 + Missense_Mutation SNP G G C novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 GNAI1,colon,carcinoma,0,1 GNAI1 NM_002069 exon6 c.G623C p.R208P CTGAGCGGAAGAA . 108.0 28.0 98.0 0.0 . 44 . . . none . . PASS Atlas-SNP HGF 3082 hgsc.bcm.edu hg19 7 81331961 81331961 + Missense_Mutation SNP C C T novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . HGF NM_000601 exon18 c.G2123A p.R708Q GCTACTCGGACAA . 386.0 175.0 346.0 0.0 . 171 . . . none . . PASS Atlas-SNP TRRAP 8295 hgsc.bcm.edu hg19 7 98576479 98576479 + Silent SNP C C T novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 TRRAP_ENST00000359863,NS,carcinoma,0,2 TRRAP NM_001244580 exon57 c.C8565T p.C2855C GGAGTGCGCCTGG . 58.0 10.0 72.0 0.0 . 863 . . . none . . PASS Atlas-SNP POP7 10248 hgsc.bcm.edu hg19 7 100304790 100304790 + Missense_Mutation SNP C C A novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . POP7 NM_005837 exon2 c.C337A p.P113T CTGGAGCCAGAGA . 177.0 42.0 172.0 0.0 . 8 . . . none . . PASS Atlas-SNP PODXL 5420 hgsc.bcm.edu hg19 7 131241055 131241055 + Missense_Mutation SNP A A G novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . PODXL NM_001018111 exon1 c.T64C p.S22P GCGACGACGGCAG . 139.0 14.0 112.0 0.0 . 53 . . . none . . PASS Atlas-SNP MFHAS1 9258 hgsc.bcm.edu hg19 8 8654999 8654999 + Missense_Mutation SNP C C G novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . MFHAS1 NM_004225 exon2 c.G3001C p.E1001Q GCAACTCCCCTGT . 84.0 17.0 93.0 0.0 . 58 . . . none . . PASS Atlas-SNP TERF1 7013 hgsc.bcm.edu hg19 8 73921213 73921213 + Missense_Mutation SNP C C G novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . TERF1 NM_017489 exon1 c.C92G p.T31R CAGAAACAGAGAG . 183.0 38.0 198.0 0.0 . 48 . . . none . . PASS Atlas-SNP FAM91A1 157769 hgsc.bcm.edu hg19 8 124799974 124799974 + Missense_Mutation SNP T T A novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . FAM91A1 NM_144963 exon14 c.T1262A p.L421H GCTTTCTTATAGA . 66.0 23.0 75.0 0.0 . 77 . . . none . . PASS Atlas-SNP ADCY8 114 hgsc.bcm.edu hg19 8 132051979 132051979 + Silent SNP A A G novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . ADCY8 NM_001115 exon1 c.T601C p.L201L GGCTCAAGTGTAG . 111.0 18.0 148.0 0.0 . 291 . . . none . . PASS Atlas-SNP ZFAT 57623 hgsc.bcm.edu hg19 8 135596131 135596131 + Missense_Mutation SNP T T C novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . ZFAT NM_020863 exon10 c.A2831G p.K944R AATTTCTTGCCAC . 105.0 27.0 128.0 0.0 . 265 . . . none . . PASS Atlas-SNP CER1 9350 hgsc.bcm.edu hg19 9 14722265 14722265 + Missense_Mutation SNP G G C novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . CER1 NM_005454 exon1 c.C406G p.H136D TGAAGTGGTGCCA . 99.0 39.0 155.0 0.0 . 41 . . . none . . PASS Atlas-SNP DENND4C 55667 hgsc.bcm.edu hg19 9 19372144 19372144 + Silent SNP G G A novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . DENND4C NM_017925 exon32 c.G5703A p.R1901R GTGCAGGAAGTGT . 87.0 23.0 156.0 0.0 . 120 . . . none . . PASS Atlas-SNP TTC16 158248 hgsc.bcm.edu hg19 9 130480052 130480052 + Splice_Site SNP G G A novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . TTC16 NM_144965 exon4 c.426+1G>A . CTACAGGTGCCTG . 49.0 23.0 78.0 0.0 . 55 . . . none . . PASS Atlas-SNP C9orf96 169436 hgsc.bcm.edu hg19 9 136249679 136249679 + Missense_Mutation SNP G G A novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . C9orf96 NM_153710 exon3 c.G214A p.E72K GCCCTGGAGGAGG . 74.0 29.0 85.0 0.0 . 77 . . . none . . PASS Atlas-SNP RNF208 727800 hgsc.bcm.edu hg19 9 140115231 140115231 + Missense_Mutation SNP G G A novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . RNF208 NM_031297 exon1 c.C434T p.T145I CCACAGGTGGGGC . 95.0 35.0 146.0 0.0 . 11 . . . none . . PASS Atlas-SNP BMS1 9790 hgsc.bcm.edu hg19 10 43326332 43326332 + Missense_Mutation SNP G G C novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . BMS1 NM_014753 exon23 c.G3637C p.A1213P CTGGATGCTCTGA . 115.0 32.0 123.0 0.0 . 132 . . . none . . PASS Atlas-SNP TMEM26 219623 hgsc.bcm.edu hg19 10 63188776 63188776 + Silent SNP T T C novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . TMEM26 NM_178505 exon4 c.A513G p.R171R TTGATCTCGAGTG . 97.0 30.0 126.0 0.0 . 47 . . . none . . PASS Atlas-SNP JMJD1C 221037 hgsc.bcm.edu hg19 10 64966402 64966402 + Missense_Mutation SNP C C A novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . JMJD1C NM_032776 exon10 c.G5027T p.R1676M GCACTCCTGCTGA . 86.0 21.0 81.0 0.0 . 347 . . . none . . PASS Atlas-SNP IFIT1 3434 hgsc.bcm.edu hg19 10 91162887 91162887 + Silent SNP C C T novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . IFIT1 NM_001270927 exon3 c.C855T p.V285V TTCTGTCTTACTG . 92.0 25.0 118.0 0.0 . 30 . . . none . . PASS Atlas-SNP SLC35G1 159371 hgsc.bcm.edu hg19 10 95660559 95660559 + Missense_Mutation SNP G G A novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . . NM_001134658 exon3 c.G410A p.G137E TCAGAGGAGTCCT . 96.0 24.0 91.0 0.0 . . . . . none . . PASS Atlas-SNP SORBS1 10580 hgsc.bcm.edu hg19 10 97143753 97143753 + Silent SNP T T C novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . SORBS1 NM_001034955 exon15 c.A1593G p.S531S TGAGCTTGACTTC . 108.0 26.0 136.0 0.0 . 185 . . . none . . PASS Atlas-SNP GAL3ST3 89792 hgsc.bcm.edu hg19 11 65810751 65810751 + Missense_Mutation SNP C C T novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 GAL3ST3,NS,carcinoma,0,1 GAL3ST3 NM_033036 exon3 c.G523A p.V175I TGGGTACGCGCCG . 98.0 22.0 160.0 0.0 . 40 . . . none . . PASS Atlas-SNP OR2AT4 341152 hgsc.bcm.edu hg19 11 74800264 74800264 + Silent SNP T T C novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . OR2AT4 NM_001005285 exon1 c.A495G p.V165V CCTTACTACTGCT . 60.0 15.0 74.0 0.0 . 32 . . . none . . PASS Atlas-SNP ANKK1 255239 hgsc.bcm.edu hg19 11 113270138 113270138 + Missense_Mutation SNP C C T novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . ANKK1 NM_178510 exon8 c.C1447T p.R483C GTCTCCCGTCAGG . 60.0 14.0 54.0 0.0 . 83 . . . none . . PASS Atlas-SNP CLSTN3 9746 hgsc.bcm.edu hg19 12 7293886 7293886 + Missense_Mutation SNP A A C novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . CLSTN3 NM_014718 exon9 c.A1372C p.T458P TTCCCCACAGTCA . 147.0 36.0 137.0 0.0 . 84 . . . none . . PASS Atlas-SNP PUS7L 83448 hgsc.bcm.edu hg19 12 44142290 44142290 + Missense_Mutation SNP A A G novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 PUS7L,NS,carcinoma,0,1 PUS7L NM_001098614 exon3 c.T1033C p.Y345H CTTGATAGGTGAT . 110.0 24.0 128.0 0.0 . 73 . . . none . . PASS Atlas-SNP ATP12A 479 hgsc.bcm.edu hg19 13 25284611 25284611 + Missense_Mutation SNP G G C novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . ATP12A NM_001185085 exon20 c.G2795C p.R932T ACCAGAGGGAATA . 143.0 38.0 141.0 0.0 . 172 . . . none . . PASS Atlas-SNP TSC22D1 8848 hgsc.bcm.edu hg19 13 45148256 45148256 + Missense_Mutation SNP G G A rs370025988 TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . TSC22D1 NM_183422 exon1 c.C1955T p.P652L GAAGCAGGATTTT . 53.0 21.0 55.0 0.0 . 88 . . . weak . . PASS Atlas-SNP CDC16 8881 hgsc.bcm.edu hg19 13 115008769 115008769 + Silent SNP G G T novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . CDC16 NM_003903 exon7 c.G579T p.L193L CAAGCTGTGTAAT . 467.0 135.0 565.0 0.0 . 50 . . . none . . PASS Atlas-SNP CHMP4A 29082 hgsc.bcm.edu hg19 14 24682658 24682658 + Missense_Mutation SNP T T A novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . CHMP4A NM_014169 exon1 c.A117T p.R39S CTCGCCTCTCCCG . 88.0 23.0 99.0 0.0 . 20 . . . none . . PASS Atlas-SNP NID2 22795 hgsc.bcm.edu hg19 14 52534874 52534874 + Missense_Mutation SNP G G A novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . NID2 NM_007361 exon2 c.C236T p.T79I CCGTTGGTGCCCA . 47.0 9.0 54.0 0.0 . 201 . . . none . . PASS Atlas-SNP NAA30 122830 hgsc.bcm.edu hg19 14 57863579 57863579 + Missense_Mutation SNP G G A novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . NAA30 NM_001011713 exon3 c.G881A p.R294K AATACAGGAGAAA . 95.0 37.0 96.0 0.0 . 30 . . . none . . PASS Atlas-SNP PTPN21 11099 hgsc.bcm.edu hg19 14 88935278 88935278 + Silent SNP G G C novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . PTPN21 NM_007039 exon18 c.C3378G p.A1126A CAGGCAGGCGATC . 92.0 28.0 99.0 0.0 . 113 . . . none . . PASS Atlas-SNP ZNF839 55778 hgsc.bcm.edu hg19 14 102800982 102800982 + Missense_Mutation SNP A A C novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . ZNF839 NM_018335 exon4 c.A1508C p.K503T TGATGAAGGTGAG . 97.0 33.0 90.0 0.0 . 41 . . . none . . PASS Atlas-SNP RORA 6095 hgsc.bcm.edu hg19 15 60797807 60797807 + Missense_Mutation SNP G G A novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . RORA NM_134260 exon7 c.C941T p.S314F GATTTAGATATAT . 48.0 20.0 102.0 0.0 . 114 . . . none . . PASS Atlas-SNP PSMD7 5713 hgsc.bcm.edu hg19 16 74335517 74335517 + Missense_Mutation SNP C C G novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . PSMD7 NM_002811 exon4 c.C324G p.I108M TGCCATCAACGAA . 74.0 15.0 108.0 0.0 . 29 . . . none . . PASS Atlas-SNP CLUH 23277 hgsc.bcm.edu hg19 17 2595757 2595757 + Missense_Mutation SNP A A C novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . . NM_015229 exon22 c.T3341G p.L1114R CCGTGCAGCACCA . 36.0 11.0 55.0 0.0 . . . . . none . . PASS Atlas-SNP PER1 5187 hgsc.bcm.edu hg19 17 8049997 8049997 + Missense_Mutation SNP G G T novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . PER1 NM_002616 exon15 c.C1822A p.L608I AGGCTAGTGGGGC . 38.0 9.0 34.0 0.0 . 104 . . . none . . PASS Atlas-SNP KRTAP17-1 83902 hgsc.bcm.edu hg19 17 39471774 39471774 + Silent SNP G G A rs368577794 TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 KRTAP17-1,colon,carcinoma,0,3 KRTAP17-1 NM_031964 exon1 c.C129T p.C43C GCCCCCGCAGCCA . 52.0 8.0 60.0 0.0 . 14 . . . weak . . PASS Atlas-SNP KRTAP17-1 83902 hgsc.bcm.edu hg19 17 39471781 39471781 + Missense_Mutation SNP G G C rs62640394 bycluster TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 KRTAP17-1,caecum,carcinoma,0,1 KRTAP17-1 NM_031964 exon1 c.C122G p.S41C CAGCCAGAGCCCC . 51.0 3.0 63.0 0.0 . 14 . . . weak G|0.984;C|0.016 0.016 PASS Atlas-SNP EPB41L3 23136 hgsc.bcm.edu hg19 18 5397279 5397279 + Silent SNP C C T novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 EPB41L3,NS,carcinoma,0,1 EPB41L3 NM_012307 exon18 c.G2619A p.S873S TCCCGCCGAGTAA . 54.0 16.0 54.0 0.0 . 222 . . . none . . PASS Atlas-SNP KCTD1 284252 hgsc.bcm.edu hg19 18 24056561 24056561 + Missense_Mutation SNP A A G novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . KCTD1 NM_001142730 exon3 c.T2051C p.F684S TCAATGAAATAGT . 82.0 24.0 100.0 0.0 . 76 . . . none . . PASS Atlas-SNP POLI 11201 hgsc.bcm.edu hg19 18 51820257 51820257 + Missense_Mutation SNP C C A novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . POLI NM_007195 exon10 c.C1643A p.S548Y GAAAATCTAGGGA . 231.0 67.0 231.0 0.0 . 132 . . . none . . PASS Atlas-SNP PDE4A 5141 hgsc.bcm.edu hg19 19 10563956 10563956 + Missense_Mutation SNP T T A novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . PDE4A NM_006202 exon1 c.T17A p.F6Y TGGATTTCTTCTG . 36.0 12.0 54.0 0.0 . 236 . . . none . . PASS Atlas-SNP PDE4A 5141 hgsc.bcm.edu hg19 19 10563957 10563957 + Missense_Mutation SNP C C A novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . PDE4A NM_006202 exon1 c.C18A p.F6L GGATTTCTTCTGC . 36.0 12.0 54.0 0.0 . 236 . . . none . . PASS Atlas-SNP ELL 8178 hgsc.bcm.edu hg19 19 18555598 18555598 + Silent SNP G G A novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . ELL NM_006532 exon12 c.C1830T p.A610A GTACTCGGCGATG . 22.0 5.0 25.0 0.0 . 52 . . . none . . PASS Atlas-SNP PSG1 5669 hgsc.bcm.edu hg19 19 43376066 43376066 + Missense_Mutation SNP G G A rs368581835 TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . PSG1 NM_001184826 exon3 c.C562T p.P188S TCATAGGGAGGCT . 103.0 26.0 104.0 0.0 . 196 . . . weak . . PASS Atlas-SNP MBOAT7 79143 hgsc.bcm.edu hg19 19 54684568 54684568 + Missense_Mutation SNP G G A novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . MBOAT7 NM_001146082 exon6 c.C776T p.A259V AAGCCGGCGGCAA . 104.0 27.0 113.0 0.0 . 37 . . . none . . PASS Atlas-SNP ADIG 149685 hgsc.bcm.edu hg19 20 37216742 37216742 + Splice_Site SNP A A C novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . ADIG NM_001018082 exon3 c.354-2A>C . GTTTCTAGTTTGG . 118.0 29.0 149.0 0.0 . 16 . . . none . . PASS Atlas-SNP SGK2 10110 hgsc.bcm.edu hg19 20 42198049 42198049 + Missense_Mutation SNP A A G novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . SGK2 NM_016276 exon5 c.A433G p.S145G GAGCGCAGTGTGC . 40.0 11.0 54.0 0.0 . 50 . . . none . . PASS Atlas-SNP SGK2 10110 hgsc.bcm.edu hg19 20 42199282 42199282 + Missense_Mutation SNP G G A novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 SGK2,NS,carcinoma,0,1 SGK2 NM_016276 exon6 c.G566A p.R189H GGGAGCGCCGGTT . 47.0 8.0 58.0 0.0 . 50 . . . none . . PASS Atlas-SNP SLC2A4RG 56731 hgsc.bcm.edu hg19 20 62373951 62373951 + Missense_Mutation SNP A A T novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . SLC2A4RG NM_020062 exon6 c.A943T p.S315C TGTCACAGTGACC . 99.0 27.0 113.0 0.0 . 20 . . . none . . PASS Atlas-SNP MYT1 4661 hgsc.bcm.edu hg19 20 62851316 62851316 + Missense_Mutation SNP G G A novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . MYT1 NM_004535 exon13 c.G2222A p.R741K GCCTGAGAGAGGA . 83.0 26.0 110.0 0.0 . 152 . . . none . . PASS Atlas-SNP UMODL1 89766 hgsc.bcm.edu hg19 21 43529755 43529755 + Nonsense_Mutation SNP C C T novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . UMODL1 NM_173568 exon10 c.C1603T p.Q535X ACCTGCCAGTGCC . 34.0 8.0 48.0 0.0 . 186 . . . none . . PASS Atlas-SNP OGT 8473 hgsc.bcm.edu hg19 X 70756180 70756180 + Missense_Mutation SNP A A C novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . OGT NM_181672 exon2 c.A190C p.I64L TCATCTATACACT . 79.0 46.0 102.0 0.0 . 207 . . . none . . PASS Atlas-SNP ND4L 0 hgsc.bcm.edu hg19 MT 10635 10635 + Missense_Mutation SNP G G A novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . . ENST00000361335 exon1 c.G166A p.A56T CTCTTAGCCAATA . 12.0 9.0 17.0 0.0 . . . . . none . . PASS Atlas-SNP UBE4A 9354 hgsc.bcm.edu hg19 11 118250311 118250315 + Frame_Shift_Del DEL CATGA CATGA - novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 CATGA CATGA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . UBE4A NM_004788 exon11 c.1742_1746del p.581_582del . . 104.0 38.0 152.0 0.0 . 97 . 0.365385 0 none . . PASS Atlas-Indel,Pindel NEFH 4744 hgsc.bcm.edu hg19 22 29885589 29885590 + In_Frame_Ins INS - - CCCCTGAGAAGGCCAAGT novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 .,4 NEFH NM_021076 exon4 c.1960_1961insCCCCTGAGAAGGCCAAGT p.S654delinsSPEKAKS . . 132.0 41.0 245.0 0.0 . 178 . 0.310606 0 none . . PASS Atlas-INDEL SALL1 6299 hgsc.bcm.edu hg19 16 51173002 51173006 + Frame_Shift_Del DEL AAATT AAATT - novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 AAATT AAATT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . SALL1 NM_002968 exon2 c.3128_3132del p.1043_1044del . . 95.0 30.0 83.0 0.0 . 301 . 0.315789 0 none . . PASS Atlas-Indel,Pindel NF2 4771 hgsc.bcm.edu hg19 22 30060995 30060996 + Frame_Shift_Ins INS - - GG novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . NF2 NM_181832 exon9 c.827_828insGG p.L276fs . . 84.0 36.0 155.0 0.0 . 1312 . 0.428571 0 none . . PASS Atlas-Indel,Pindel CAMK1D 57118 hgsc.bcm.edu hg19 10 12870792 12870792 + Frame_Shift_Del DEL G G - novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . CAMK1D NM_153498 exon11 c.1063delA p.S355fs . . 47.0 12.0 48.0 0.0 . 99 . 0.255319 0 none . . PASS Atlas-INDEL UBA5 79876 hgsc.bcm.edu hg19 3 132395353 132395353 + Frame_Shift_Del DEL A A - novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . UBA5 NM_024818 exon12 c.1197delC p.A399fs . . 133.0 31.0 149.0 0.0 . 33 . 0.233083 0 none . . PASS Atlas-Indel,Pindel ABCC5 10057 hgsc.bcm.edu hg19 3 183700580 183700580 + Frame_Shift_Del DEL T T - novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . ABCC5 NM_005688 exon6 c.808delG p.E270fs . . 149.0 31.0 165.0 0.0 . 142 . 0.208054 0 none . . PASS Atlas-Indel,Pindel AXDND1 126859 hgsc.bcm.edu hg19 1 179494536 179494538 + In_Frame_Del DEL AGG AGG - novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 AGG AGG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . AXDND1 NM_144696 exon22 c.2563_2565del p.855_855del . . 705.0 192.0 741.0 0.0 . 142 . 0.27234 0 none . . PASS Atlas-Indel,Pindel PDE4A 5141 hgsc.bcm.edu hg19 19 10563954 10563954 + Frame_Shift_Del DEL T T - novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . PDE4A NM_006202 exon1 c.14delA p.D5fs . . 36.0 12.0 57.0 0.0 . 236 . 0.333333 0 none . . PASS Atlas-INDEL LBX2 85474 hgsc.bcm.edu hg19 2 74725195 74725196 + Frame_Shift_Ins INS - - GCGA novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . LBX2 NM_001009812 exon2 c.444_445insTCGC p.A148fs . . 112.0 29.0 154.0 0.0 . 13 . 0.258929 0 none . . PASS Atlas-Indel,Pindel NCF4 4689 hgsc.bcm.edu hg19 22 37266586 37266587 + Splice_Site DEL TA TA - novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 TA TA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . NCF4 . . . . . . 29.0 11.0 43.0 0.0 . 66 . 0.37931 0 none . . PASS Atlas-INDEL ZNF24 7572 hgsc.bcm.edu hg19 18 32920341 32920349 + In_Frame_Del DEL AGATTTGTT AGATTTGTT - novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 AGATTTGTT AGATTTGTT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . ZNF24 NM_006965 exon2 c.267_275del p.89_92del . . 148.0 41.0 165.0 0.0 . 40 . 0.277027 0 none . . PASS Atlas-Indel,Pindel PDE4A 5141 hgsc.bcm.edu hg19 19 10563955 10563957 + In_Frame_Del DEL TTC TTC - novel TCGA-Y8-A896-01A-11D-A35Z-10 TCGA-Y8-A896-10A-01D-A35Z-10 TTC TTC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1d456468-7272-4470-892b-437ed167c716 35a2ebd1-9aa7-4978-92e8-f2b148b69622 . PDE4A NM_006202 exon1 c.15_17del p.5_6del . . 37.0 10.0 56.0 0.0 . 236 . 0.270 . none . . PASS Pindel