Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm LCE2C 353140 hgsc.bcm.edu hg19 1 152648496 152648496 + Missense_Mutation SNP C C T novel TCGA-Y8-A8S0-01A-11D-A36X-10 TCGA-Y8-A8S0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1736e012-2ce0-46e4-ab85-bb0e9449a458 44329552-9eea-40f0-9170-8bc9c77aa51e . LCE2C NM_178429 exon2 c.C5T p.S2F GCATGTCTTGCCA . 154.0 77.0 116.0 0.0 . 24 . . . none . . PASS Atlas-SNP OLFML2B 25903 hgsc.bcm.edu hg19 1 161993092 161993092 + Missense_Mutation SNP C C G novel TCGA-Y8-A8S0-01A-11D-A36X-10 TCGA-Y8-A8S0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1736e012-2ce0-46e4-ab85-bb0e9449a458 44329552-9eea-40f0-9170-8bc9c77aa51e . OLFML2B NM_015441 exon1 c.G129C p.E43D CAGAGTCTCGTCC . 118.0 26.0 131.0 0.0 . 114 . . . none . . PASS Atlas-SNP PPP1R12B 4660 hgsc.bcm.edu hg19 1 202418132 202418132 + Silent SNP C C G novel TCGA-Y8-A8S0-01A-11D-A36X-10 TCGA-Y8-A8S0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1736e012-2ce0-46e4-ab85-bb0e9449a458 44329552-9eea-40f0-9170-8bc9c77aa51e . PPP1R12B NM_002481 exon13 c.C1683G p.S561S CAAATCCCAGGCC . 125.0 46.0 145.0 0.0 . 100 . . . none . . PASS Atlas-SNP KCNH1 3756 hgsc.bcm.edu hg19 1 210857406 210857406 + Silent SNP C C A novel TCGA-Y8-A8S0-01A-11D-A36X-10 TCGA-Y8-A8S0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1736e012-2ce0-46e4-ab85-bb0e9449a458 44329552-9eea-40f0-9170-8bc9c77aa51e . KCNH1 NM_172362 exon11 c.G2187T p.L729L CAAGATCAGGGGG . 55.0 21.0 56.0 0.0 . 199 . . . none . . PASS Atlas-SNP GTF3C2 2976 hgsc.bcm.edu hg19 2 27556578 27556578 + Silent SNP C C T novel TCGA-Y8-A8S0-01A-11D-A36X-10 TCGA-Y8-A8S0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1736e012-2ce0-46e4-ab85-bb0e9449a458 44329552-9eea-40f0-9170-8bc9c77aa51e . GTF3C2 NM_001521 exon13 c.A1676A p.H559H GCCAGGCTAAGGC . 168.0 10.0 163.0 0.0 . 73 . . . none . . PASS Atlas-SNP PASK 23178 hgsc.bcm.edu hg19 2 242077491 242077491 + Silent SNP C C T rs374396215 TCGA-Y8-A8S0-01A-11D-A36X-10 TCGA-Y8-A8S0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1736e012-2ce0-46e4-ab85-bb0e9449a458 44329552-9eea-40f0-9170-8bc9c77aa51e . PASK NM_015148 exon6 c.G753A p.T251T ACATGACGTGACG . 74.0 5.0 71.0 0.0 . 230 . . . weak . . PASS Atlas-SNP DLEC1 9940 hgsc.bcm.edu hg19 3 38103779 38103779 + Missense_Mutation SNP G G A novel TCGA-Y8-A8S0-01A-11D-A36X-10 TCGA-Y8-A8S0-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1736e012-2ce0-46e4-ab85-bb0e9449a458 44329552-9eea-40f0-9170-8bc9c77aa51e . DLEC1 NM_007337 exon4 c.G793A p.D265N TTCGAAGATGAGT . 84.0 40.0 110.0 0.0 . 278 . . . none . . PASS Atlas-SNP CPNE4 131034 hgsc.bcm.edu hg19 3 131268825 131268825 + Nonsense_Mutation SNP G G T novel TCGA-Y8-A8S0-01A-11D-A36X-10 TCGA-Y8-A8S0-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1736e012-2ce0-46e4-ab85-bb0e9449a458 44329552-9eea-40f0-9170-8bc9c77aa51e . CPNE4 NM_130808 exon14 c.C1268A p.S423X GACGCTGACTTGG . 139.0 57.0 120.0 0.0 . 112 . . . none . . PASS Atlas-SNP RBP1 5947 hgsc.bcm.edu hg19 3 139236515 139236515 + Missense_Mutation SNP C C G novel TCGA-Y8-A8S0-01A-11D-A36X-10 TCGA-Y8-A8S0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1736e012-2ce0-46e4-ab85-bb0e9449a458 44329552-9eea-40f0-9170-8bc9c77aa51e . RBP1 NM_002899 exon4 c.G548C p.R183T TCCACTCTCATCT . 71.0 11.0 69.0 0.0 . 39 . . . none . . PASS Atlas-SNP BOD1L1 259282 hgsc.bcm.edu hg19 4 13602062 13602062 + Silent SNP C C T novel TCGA-Y8-A8S0-01A-11D-A36X-10 TCGA-Y8-A8S0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1736e012-2ce0-46e4-ab85-bb0e9449a458 44329552-9eea-40f0-9170-8bc9c77aa51e . . NM_148894 exon10 c.G6462A p.L2154L GATAGGCAATTCG . 57.0 30.0 53.0 0.0 . . . . . none . . PASS Atlas-SNP WDR19 57728 hgsc.bcm.edu hg19 4 39233429 39233429 + Silent SNP T T G novel TCGA-Y8-A8S0-01A-11D-A36X-10 TCGA-Y8-A8S0-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1736e012-2ce0-46e4-ab85-bb0e9449a458 44329552-9eea-40f0-9170-8bc9c77aa51e . WDR19 NM_025132 exon18 c.T1995G p.A665A TGATGCTTGGGAA . 76.0 39.0 110.0 0.0 . 96 . . . none . . PASS Atlas-SNP METTL14 57721 hgsc.bcm.edu hg19 4 119613212 119613212 + Missense_Mutation SNP T T C novel TCGA-Y8-A8S0-01A-11D-A36X-10 TCGA-Y8-A8S0-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1736e012-2ce0-46e4-ab85-bb0e9449a458 44329552-9eea-40f0-9170-8bc9c77aa51e . METTL14 NM_020961 exon5 c.T401C p.I134T ATTTCATCAGGGA . 87.0 36.0 69.0 0.0 . 41 . . . none . . PASS Atlas-SNP ERBB2IP 55914 hgsc.bcm.edu hg19 5 65350314 65350314 + Missense_Mutation SNP G G A novel TCGA-Y8-A8S0-01A-11D-A36X-10 TCGA-Y8-A8S0-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1736e012-2ce0-46e4-ab85-bb0e9449a458 44329552-9eea-40f0-9170-8bc9c77aa51e . ERBB2IP NM_001253699 exon21 c.G3168A p.M1056I GGAAATGTGGGCC . 95.0 24.0 84.0 0.0 . 120 . . . none . . PASS Atlas-SNP DDX46 9879 hgsc.bcm.edu hg19 5 134109546 134109546 + Missense_Mutation SNP A A G novel TCGA-Y8-A8S0-01A-11D-A36X-10 TCGA-Y8-A8S0-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1736e012-2ce0-46e4-ab85-bb0e9449a458 44329552-9eea-40f0-9170-8bc9c77aa51e . DDX46 NM_014829 exon5 c.A608G p.D203G AGGACGATGATGG . 300.0 15.0 288.0 0.0 . 77 . . . none . . PASS Atlas-SNP VWA7 80737 hgsc.bcm.edu hg19 6 31740832 31740832 + Missense_Mutation SNP T T G novel TCGA-Y8-A8S0-01A-11D-A36X-10 TCGA-Y8-A8S0-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1736e012-2ce0-46e4-ab85-bb0e9449a458 44329552-9eea-40f0-9170-8bc9c77aa51e . . NM_025258 exon7 c.A986C p.E329A TTGATCTCCTCAC . 60.0 11.0 61.0 0.0 . . . . . none . . PASS Atlas-SNP HBS1L 10767 hgsc.bcm.edu hg19 6 135360838 135360838 + Silent SNP T T C novel TCGA-Y8-A8S0-01A-11D-A36X-10 TCGA-Y8-A8S0-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1736e012-2ce0-46e4-ab85-bb0e9449a458 44329552-9eea-40f0-9170-8bc9c77aa51e . HBS1L NM_001145207 exon4 c.A303G p.L101L TTCAATTAATATT . 68.0 31.0 64.0 0.0 . 75 . . . none . . PASS Atlas-SNP KCNU1 157855 hgsc.bcm.edu hg19 8 36694438 36694438 + Missense_Mutation SNP C C A novel TCGA-Y8-A8S0-01A-11D-A36X-10 TCGA-Y8-A8S0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1736e012-2ce0-46e4-ab85-bb0e9449a458 44329552-9eea-40f0-9170-8bc9c77aa51e . KCNU1 NM_001031836 exon14 c.C1493A p.S498Y TAACATCTCTATT . 96.0 45.0 86.0 0.0 . 359 . . . none . . PASS Atlas-SNP HGSNAT 138050 hgsc.bcm.edu hg19 8 43048924 43048924 + Missense_Mutation SNP T T C novel TCGA-Y8-A8S0-01A-11D-A36X-10 TCGA-Y8-A8S0-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1736e012-2ce0-46e4-ab85-bb0e9449a458 44329552-9eea-40f0-9170-8bc9c77aa51e . HGSNAT NM_152419 exon14 c.T1402C p.Y468H GTGGCCTATGACC . 98.0 40.0 111.0 0.0 . 85 . . . none . . PASS Atlas-SNP PI15 51050 hgsc.bcm.edu hg19 8 75761353 75761353 + Missense_Mutation SNP G G T novel TCGA-Y8-A8S0-01A-11D-A36X-10 TCGA-Y8-A8S0-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1736e012-2ce0-46e4-ab85-bb0e9449a458 44329552-9eea-40f0-9170-8bc9c77aa51e . PI15 NM_015886 exon6 c.G642T p.K214N TTCTAGGGGCAAT . 74.0 34.0 75.0 0.0 . 73 . . . none . . PASS Atlas-SNP PI15 51050 hgsc.bcm.edu hg19 8 75761354 75761354 + Missense_Mutation SNP G G A novel TCGA-Y8-A8S0-01A-11D-A36X-10 TCGA-Y8-A8S0-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1736e012-2ce0-46e4-ab85-bb0e9449a458 44329552-9eea-40f0-9170-8bc9c77aa51e . PI15 NM_015886 exon6 c.G643A p.G215S TCTAGGGGCAATT . 75.0 35.0 75.0 0.0 . 73 . . . none . . PASS Atlas-SNP RBM17 84991 hgsc.bcm.edu hg19 10 6155504 6155504 + Missense_Mutation SNP C C G novel TCGA-Y8-A8S0-01A-11D-A36X-10 TCGA-Y8-A8S0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1736e012-2ce0-46e4-ab85-bb0e9449a458 44329552-9eea-40f0-9170-8bc9c77aa51e . RBM17 NM_001145547 exon9 c.C890G p.T297S CGCTGACTGAAAT . 52.0 19.0 64.0 0.0 . 45 . . . none . . PASS Atlas-SNP WAC 51322 hgsc.bcm.edu hg19 10 28824568 28824568 + Silent SNP T T A novel TCGA-Y8-A8S0-01A-11D-A36X-10 TCGA-Y8-A8S0-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1736e012-2ce0-46e4-ab85-bb0e9449a458 44329552-9eea-40f0-9170-8bc9c77aa51e . WAC NM_100486 exon3 c.T156A p.P52P AGATCCTTCACCA . 192.0 90.0 183.0 0.0 . 77 . . . none . . PASS Atlas-SNP SLC16A12 387700 hgsc.bcm.edu hg19 10 91196029 91196029 + Missense_Mutation SNP A A G novel TCGA-Y8-A8S0-01A-11D-A36X-10 TCGA-Y8-A8S0-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1736e012-2ce0-46e4-ab85-bb0e9449a458 44329552-9eea-40f0-9170-8bc9c77aa51e . SLC16A12 NM_213606 exon7 c.T1076C p.M359T CCATCCATTCCCA . 124.0 58.0 123.0 0.0 . 40 . . . none . . PASS Atlas-SNP MCMBP 79892 hgsc.bcm.edu hg19 10 121602090 121602090 + Missense_Mutation SNP A A T novel TCGA-Y8-A8S0-01A-11D-A36X-10 TCGA-Y8-A8S0-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1736e012-2ce0-46e4-ab85-bb0e9449a458 44329552-9eea-40f0-9170-8bc9c77aa51e . MCMBP NM_024834 exon10 c.T1024A p.S342T ATTCGGACATGAA . 65.0 32.0 95.0 0.0 . 49 . . . none . . PASS Atlas-SNP BTBD16 118663 hgsc.bcm.edu hg19 10 124066782 124066782 + Silent SNP G G A novel TCGA-Y8-A8S0-01A-11D-A36X-10 TCGA-Y8-A8S0-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1736e012-2ce0-46e4-ab85-bb0e9449a458 44329552-9eea-40f0-9170-8bc9c77aa51e . BTBD16 NM_144587 exon10 c.G870A p.Q290Q GATTCAGGCAATT . 115.0 56.0 134.0 0.0 . 44 . . . none . . PASS Atlas-SNP CD6 923 hgsc.bcm.edu hg19 11 60774086 60774086 + Missense_Mutation SNP C C G novel TCGA-Y8-A8S0-01A-11D-A36X-10 TCGA-Y8-A8S0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1736e012-2ce0-46e4-ab85-bb0e9449a458 44329552-9eea-40f0-9170-8bc9c77aa51e . CD6 NM_006725 exon2 c.C90G p.S30R CACCAGCAGTGCA . 70.0 26.0 60.0 0.0 . 122 . . . none . . PASS Atlas-SNP DYNC2H1 79659 hgsc.bcm.edu hg19 11 103080609 103080609 + Missense_Mutation SNP C C T novel TCGA-Y8-A8S0-01A-11D-A36X-10 TCGA-Y8-A8S0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1736e012-2ce0-46e4-ab85-bb0e9449a458 44329552-9eea-40f0-9170-8bc9c77aa51e . DYNC2H1 NM_001377 exon53 c.C8459T p.P2820L AGATACCTGAAAT . 1840.0 821.0 1697.0 1.0 . 246 . . . none . . PASS Atlas-SNP COL4A1 1282 hgsc.bcm.edu hg19 13 110857716 110857716 + Missense_Mutation SNP C C T novel TCGA-Y8-A8S0-01A-11D-A36X-10 TCGA-Y8-A8S0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1736e012-2ce0-46e4-ab85-bb0e9449a458 44329552-9eea-40f0-9170-8bc9c77aa51e . COL4A1 NM_001845 exon17 c.G941A p.G314D TGGCGGCCTATGA . 150.0 6.0 158.0 0.0 . 372 . . . none . . PASS Atlas-SNP FAM179B 23116 hgsc.bcm.edu hg19 14 45542589 45542589 + Missense_Mutation SNP A A T novel TCGA-Y8-A8S0-01A-11D-A36X-10 TCGA-Y8-A8S0-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1736e012-2ce0-46e4-ab85-bb0e9449a458 44329552-9eea-40f0-9170-8bc9c77aa51e . FAM179B NM_015091 exon19 c.A4988T p.N1663I TGACAAATAGTGG . 96.0 49.0 90.0 0.0 . 115 . . . none . . PASS Atlas-SNP TSNAXIP1 55815 hgsc.bcm.edu hg19 16 67860650 67860650 + Missense_Mutation SNP G G A novel TCGA-Y8-A8S0-01A-11D-A36X-10 TCGA-Y8-A8S0-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1736e012-2ce0-46e4-ab85-bb0e9449a458 44329552-9eea-40f0-9170-8bc9c77aa51e . TSNAXIP1 NM_018430 exon12 c.G1295A p.S432N GGCCCAGTGATGC . 141.0 76.0 104.0 0.0 . 66 . . . none . . PASS Atlas-SNP FXR2 9513 hgsc.bcm.edu hg19 17 7497273 7497273 + Missense_Mutation SNP G G T novel TCGA-Y8-A8S0-01A-11D-A36X-10 TCGA-Y8-A8S0-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1736e012-2ce0-46e4-ab85-bb0e9449a458 44329552-9eea-40f0-9170-8bc9c77aa51e . FXR2 NM_004860 exon11 c.C1070A p.A357D GCCTGGGCATTGC . 117.0 5.0 63.0 0.0 . 44 . . . none . . PASS Atlas-SNP MYH10 4628 hgsc.bcm.edu hg19 17 8397110 8397110 + Missense_Mutation SNP C C G novel TCGA-Y8-A8S0-01A-11D-A36X-10 TCGA-Y8-A8S0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1736e012-2ce0-46e4-ab85-bb0e9449a458 44329552-9eea-40f0-9170-8bc9c77aa51e MYH10,NS,carcinoma,0,2 MYH10 NM_001256012 exon32 c.G4150C p.E1384Q CCTCCTCCTGCTG . 74.0 5.0 57.0 2.0 . 148 . . . none . . PASS Atlas-SNP KRTAP4-7 100132476 hgsc.bcm.edu hg19 17 39240794 39240794 + Silent SNP C C T rs9894106 by2hit2allele;alternate_allele TCGA-Y8-A8S0-01A-11D-A36X-10 TCGA-Y8-A8S0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1736e012-2ce0-46e4-ab85-bb0e9449a458 44329552-9eea-40f0-9170-8bc9c77aa51e KRTAP4-7,NS,carcinoma,0,1 KRTAP4-7 NM_033061 exon1 c.C336T p.P112P CCGCCCCAGCTGC . 21.0 5.0 15.0 1.0 . 49 . . . alt . . PASS Atlas-SNP HSPB9 94086 hgsc.bcm.edu hg19 17 40275296 40275296 + Missense_Mutation SNP C C T novel TCGA-Y8-A8S0-01A-11D-A36X-10 TCGA-Y8-A8S0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1736e012-2ce0-46e4-ab85-bb0e9449a458 44329552-9eea-40f0-9170-8bc9c77aa51e . HSPB9 NM_033194 exon1 c.C428T p.P143L CAGGACCGTCCCC . 66.0 40.0 35.0 0.0 . 11 . . . none . . PASS Atlas-SNP GREB1L 80000 hgsc.bcm.edu hg19 18 19029545 19029545 + Missense_Mutation SNP G G A novel TCGA-Y8-A8S0-01A-11D-A36X-10 TCGA-Y8-A8S0-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1736e012-2ce0-46e4-ab85-bb0e9449a458 44329552-9eea-40f0-9170-8bc9c77aa51e KIAA1772,NS,carcinoma,0,2 GREB1L NM_001142966 exon12 c.G1468A p.E490K CTGAGAGAAAGAG . 85.0 51.0 80.0 2.0 . 69 . . . none . . PASS Atlas-SNP ABCA7 10347 hgsc.bcm.edu hg19 19 1059025 1059025 + Missense_Mutation SNP T T A novel TCGA-Y8-A8S0-01A-11D-A36X-10 TCGA-Y8-A8S0-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1736e012-2ce0-46e4-ab85-bb0e9449a458 44329552-9eea-40f0-9170-8bc9c77aa51e . ABCA7 NM_019112 exon40 c.T5404A p.Y1802N CAGGTATACCGTG . 116.0 51.0 101.0 0.0 . 174 . . . none . . PASS Atlas-SNP ZNRF4 148066 hgsc.bcm.edu hg19 19 5456739 5456739 + Missense_Mutation SNP G G C novel TCGA-Y8-A8S0-01A-11D-A36X-10 TCGA-Y8-A8S0-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1736e012-2ce0-46e4-ab85-bb0e9449a458 44329552-9eea-40f0-9170-8bc9c77aa51e . ZNRF4 NM_181710 exon1 c.G1237C p.E413Q TCCCTGGAGGCAG . 102.0 45.0 104.0 0.0 . 59 . . . none . . PASS Atlas-SNP ZNF536 9745 hgsc.bcm.edu hg19 19 31039523 31039523 + Silent SNP A A G novel TCGA-Y8-A8S0-01A-11D-A36X-10 TCGA-Y8-A8S0-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1736e012-2ce0-46e4-ab85-bb0e9449a458 44329552-9eea-40f0-9170-8bc9c77aa51e . ZNF536 NM_014717 exon4 c.A2997G p.A999A CATTGCATGGCAC . 56.0 21.0 56.0 0.0 . 424 . . . none . . PASS Atlas-SNP PLAC4 191585 hgsc.bcm.edu hg19 21 42551433 42551433 + Silent SNP G G A novel TCGA-Y8-A8S0-01A-11D-A36X-10 TCGA-Y8-A8S0-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1736e012-2ce0-46e4-ab85-bb0e9449a458 44329552-9eea-40f0-9170-8bc9c77aa51e . . NM_182832 exon1 c.C123T p.P41P GTGTCTGGGGTGA . 72.0 4.0 100.0 0.0 . . . . . none . . PASS Atlas-SNP GAB4 128954 hgsc.bcm.edu hg19 22 17472825 17472825 + Missense_Mutation SNP T T C novel TCGA-Y8-A8S0-01A-11D-A36X-10 TCGA-Y8-A8S0-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1736e012-2ce0-46e4-ab85-bb0e9449a458 44329552-9eea-40f0-9170-8bc9c77aa51e . GAB4 NM_001037814 exon2 c.A416G p.D139G TTCATGTCCTCCC . 85.0 50.0 77.0 0.0 . 95 . . . none . . PASS Atlas-SNP MAOA 4128 hgsc.bcm.edu hg19 X 43603409 43603409 + Silent SNP T T C novel TCGA-Y8-A8S0-01A-11D-A36X-10 TCGA-Y8-A8S0-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1736e012-2ce0-46e4-ab85-bb0e9449a458 44329552-9eea-40f0-9170-8bc9c77aa51e . MAOA NM_000240 exon14 c.T1428C p.P476P AGAACCTGAATCA . 56.0 52.0 62.0 0.0 . 48 . . . none . . PASS Atlas-SNP AR 367 hgsc.bcm.edu hg19 X 66765228 66765228 + Silent SNP A A G novel TCGA-Y8-A8S0-01A-11D-A36X-10 TCGA-Y8-A8S0-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1736e012-2ce0-46e4-ab85-bb0e9449a458 44329552-9eea-40f0-9170-8bc9c77aa51e . AR NM_000044 exon1 c.A240G p.Q80Q GCAGCAAGAGACT . 116.0 15.0 74.0 0.0 . 249 . . . none . . PASS Atlas-SNP AR 367 hgsc.bcm.edu hg19 X 66765229 66765229 + Missense_Mutation SNP G G C novel TCGA-Y8-A8S0-01A-11D-A36X-10 TCGA-Y8-A8S0-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1736e012-2ce0-46e4-ab85-bb0e9449a458 44329552-9eea-40f0-9170-8bc9c77aa51e . AR NM_000044 exon1 c.G241C p.E81Q CAGCAAGAGACTA . 116.0 10.0 75.0 0.0 . 249 . . . none . . PASS Atlas-SNP RENBP 5973 hgsc.bcm.edu hg19 X 153207005 153207005 + Missense_Mutation SNP A A G novel TCGA-Y8-A8S0-01A-11D-A36X-10 TCGA-Y8-A8S0-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1736e012-2ce0-46e4-ab85-bb0e9449a458 44329552-9eea-40f0-9170-8bc9c77aa51e . RENBP NM_002910 exon8 c.T871C p.F291L AGTGGAAGGGCAA . 168.0 160.0 149.0 0.0 . 69 . . . none . . PASS Atlas-SNP NEB 4703 hgsc.bcm.edu hg19 2 152359933 152359933 + Frame_Shift_Del DEL C C - novel TCGA-Y8-A8S0-01A-11D-A36X-10 TCGA-Y8-A8S0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1736e012-2ce0-46e4-ab85-bb0e9449a458 44329552-9eea-40f0-9170-8bc9c77aa51e . NEB NM_001271208 exon167 c.23871delA p.G7957fs . . 91.0 43.0 113.0 0.0 . 1697 . 0.472527 0 none . . PASS Atlas-INDEL COL6A2 1292 hgsc.bcm.edu hg19 21 47545697 47545703 + Splice_Site DEL TTGCAGG TTGCAGG - novel TCGA-Y8-A8S0-01A-11D-A36X-10 TCGA-Y8-A8S0-10A-01D-A370-10 TTGCAGG TTGCAGG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1736e012-2ce0-46e4-ab85-bb0e9449a458 44329552-9eea-40f0-9170-8bc9c77aa51e . COL6A2 . . . . . . 51.0 20.0 68.0 0.0 . 351 . 0.392157 0 none . . PASS Atlas-Indel,Pindel NEB 4703 hgsc.bcm.edu hg19 2 152359933 152359934 + Frame_Shift_Del DEL CC CC - novel TCGA-Y8-A8S0-01A-11D-A36X-10 TCGA-Y8-A8S0-10A-01D-A370-10 CC CC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1736e012-2ce0-46e4-ab85-bb0e9449a458 44329552-9eea-40f0-9170-8bc9c77aa51e . NEB NM_001271208 exon167 c.23870_23871del p.7957_7957del . . 90.0 22.0 113.0 0.0 . 1697 . 0.244 . none . . PASS Pindel