Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
SCML2	0	genome.wustl.edu	36	X	18174676	18174676	+	Silent	SNP	G	G	A			TCGA-AB-2804-03B-01W-0728-08	TCGA-AB-2804-11B-01W-0728-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3b3597ef-18f7-48a0-a39a-3a9e09f0a1d7	cc098a35-5f3d-460b-9d1c-f37f513dfc21	X	18174676	18174676	G	A	SNP	SCML2	NM_006089.2	human	genbank	54_36p	-1	validated	silent	c.1764	p.D588	0.001	NULL	HMMPfam_SAM_1,HMMSmart_SM00454,HMMPfam_MBT,HMMSmart_SM00561,superfamily_SAM/Pointed domain,superfamily_Tudor/PWWP/MBT	-	no_errors	44	0	0.00	43	95	68.35	NA	NA	NA
PHF6	0	genome.wustl.edu	36	X	133355645	133355645	+	Nonsense_Mutation	SNP	G	G	T			TCGA-AB-2804-03B-01W-0728-08	TCGA-AB-2804-11B-01W-0728-08	G	G	G	T	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3b3597ef-18f7-48a0-a39a-3a9e09f0a1d7	cc098a35-5f3d-460b-9d1c-f37f513dfc21	X	133355645	133355645	G	T	SNP	PHF6	NM_001015877.1	human	genbank	54_36p	+1	reviewed	nonsense	c.415	p.E139*	1.000	NULL	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger	-	no_errors	25	0	0.00	15	74	83.15	NA	NA	NA
LIMS2	0	genome.wustl.edu	36	2	128128537	128128537	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2804-03B-01W-0728-08	TCGA-AB-2804-11B-01W-0728-08	G	G	G	C	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3b3597ef-18f7-48a0-a39a-3a9e09f0a1d7	cc098a35-5f3d-460b-9d1c-f37f513dfc21	2	128128537	128128537	G	C	SNP	LIMS2	NM_017980.1	human	genbank	54_36p	-1	provisional	missense	c.362	p.P121R	0.999	HMMPfam_LIM,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,superfamily_SSF57716	HMMPfam_LIM,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,superfamily_SSF57716	-	no_errors	18	0	0.00	35	24	40.68	NA	NA	NA
GNRHR	0	genome.wustl.edu	36	4	68302234	68302234	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2804-03B-01W-0728-08	TCGA-AB-2804-11B-01W-0728-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3b3597ef-18f7-48a0-a39a-3a9e09f0a1d7	cc098a35-5f3d-460b-9d1c-f37f513dfc21	4	68302234	68302234	G	A	SNP	GNRHR	NM_000406.2	human	genbank	54_36p	-1	reviewed	missense	c.415	p.R139C	1.000	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors	83	0	0.00	146	116	43.94	NA	NA	NA
ATP2A2	0	genome.wustl.edu	36	12	109249835	109249835	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2804-03B-01W-0728-08	TCGA-AB-2804-11B-01W-0728-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3b3597ef-18f7-48a0-a39a-3a9e09f0a1d7	cc098a35-5f3d-460b-9d1c-f37f513dfc21	12	109249835	109249835	C	T	SNP	ATP2A2	NM_170665.1	human	genbank	54_36p	+1	reviewed	missense	c.725	p.T242I	1.000	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transmembrane domain M	HMMPfam_Cation_ATPase_N,HMMPfam_Hydrolase,HMMPfam_Cation_ATPase_C,HMMPfam_E1-E2_ATPase,PatternScan_ATPASE_E1_E2,superfamily_HAD-like,superfamily_Calcium ATPase transduction domain A,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M	-	no_errors	82	1	1.20	184	103	35.27	NA	NA	NA
LOC728770	0	genome.wustl.edu	36	15	32602565	32602565	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2804-03B-01W-0728-08	TCGA-AB-2804-11B-01W-0728-08	G	G	G	C	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3b3597ef-18f7-48a0-a39a-3a9e09f0a1d7	cc098a35-5f3d-460b-9d1c-f37f513dfc21	15	32602565	32602565	G	C	SNP	LOC728770	XM_001718857.1	human	genbank	54_36p	+1	model	missense	c.752	p.C251S	0.002	NULL	HMMPfam_GED,HMMSmart_SM00302	-	pseudogene	12	1	7.69	4	3	37.50	NA	NA	NA
OTOA	0	genome.wustl.edu	36	16	21649688	21649688	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2804-03B-01W-0728-08	TCGA-AB-2804-11B-01W-0728-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3b3597ef-18f7-48a0-a39a-3a9e09f0a1d7	cc098a35-5f3d-460b-9d1c-f37f513dfc21	16	21649688	21649688	C	T	SNP	OTOA	NM_144672.3	human	genbank	54_36p	+1	provisional	missense	c.2237	p.T746M	0.021	NULL	NULL	-	no_errors	60	0	0.00	174	111	38.95	NA	NA	NA
C19orf55	0	genome.wustl.edu	36	19	40940951	40940951	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2804-03B-01W-0728-08	TCGA-AB-2804-11B-01W-0728-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3b3597ef-18f7-48a0-a39a-3a9e09f0a1d7	cc098a35-5f3d-460b-9d1c-f37f513dfc21	19	40940951	40940951	C	T	SNP	C19orf55	ENST00000396911	human	ensembl	54_36p	+1	known	missense	c.73	p.R25C	0.000	NULL	NULL	-	no_errors	19	0	0.00	50	19	27.54	NA	NA	NA
LILRB2	0	genome.wustl.edu	36	19	59474649	59474649	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2804-03B-01W-0728-08	TCGA-AB-2804-11B-01W-0728-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3b3597ef-18f7-48a0-a39a-3a9e09f0a1d7	cc098a35-5f3d-460b-9d1c-f37f513dfc21	19	59474649	59474649	C	T	SNP	LILRB2	NM_005874.2	human	genbank	54_36p	-1	reviewed	missense	c.785	p.R262H	0.000	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors	24	0	0.00	35	18	33.96	NA	NA	NA
ABTB1	0	genome.wustl.edu	36	3	128878804	128878805	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AB-2804-03B-01W-0728-08	TCGA-AB-2804-11B-01W-0728-08	-	-	-	C	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3b3597ef-18f7-48a0-a39a-3a9e09f0a1d7	cc098a35-5f3d-460b-9d1c-f37f513dfc21	3	128878804	128878805	-	C	INS	ABTB1	NM_172027.2	human	genbank	54_36p	+1	reviewed	frame_shift_ins	c.747_748	p.E251fs	1.000:1.000	NULL	HMMSmart_SM00225,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,superfamily_POZ domain,HMMPfam_BTB	-	no_errors	12	0	0.00	20	4	16.67	NA	NA	NA