Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
ENSG00000210082	0	genome.wustl.edu	36	MT	2779	2779	+	RNA	SNP	G	G	A			TCGA-AB-2811-03B-01W-0728-08	TCGA-AB-2811-11B-01W-0728-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	7e9b79b7-d6b7-4365-8597-dad296c4b3f5	9602849c-4204-47bd-9c80-7af80031f25c	MT	2779	2779	G	A	SNP	ENSG00000210082	ENST00000387347	human	ensembl	54_36p	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors	1745	83	4.52	3832	1399	26.70	NA	NA	NA
SMC1A	0	genome.wustl.edu	36	X	53449304	53449304	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2811-03B-01W-0728-08	TCGA-AB-2811-11B-01W-0728-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	7e9b79b7-d6b7-4365-8597-dad296c4b3f5	9602849c-4204-47bd-9c80-7af80031f25c	X	53449304	53449304	C	T	SNP	SMC1A	NM_006306.2	human	genbank	54_36p	-1	reviewed	missense	c.1757	p.R586Q	1.000	HMMPfam_SMC_N,HMMPfam_SMC_hinge,superfamily_SMC_hinge,superfamily_SSF52540	HMMPfam_SMC_N,HMMPfam_SMC_hinge,superfamily_SMC_hinge,superfamily_SSF52540	-	no_errors	22	1	4.35	8	97	92.38	5	12	70.59
DNMT3A	0	genome.wustl.edu	36	2	25310746	25310746	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2811-03B-01W-0728-08	TCGA-AB-2811-11B-01W-0728-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	7e9b79b7-d6b7-4365-8597-dad296c4b3f5	9602849c-4204-47bd-9c80-7af80031f25c	2	25310746	25310746	C	T	SNP	DNMT3A	NM_022552.3	human	genbank	54_36p	-1	reviewed	missense	c.2645	p.R882H	1.000	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_DNA_methylase,superfamily_FYVE/PHD zinc finger,PatternScan_C5_MTASE_1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_Tudor/PWWP/MBT	-	no_errors	73	6	7.50	91	84	48.00	23	26	53.06
TEKT4	0	genome.wustl.edu	36	2	94906188	94906188	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2811-03B-01W-0728-08	TCGA-AB-2811-11B-01W-0728-08	A	A	A	G	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	7e9b79b7-d6b7-4365-8597-dad296c4b3f5	9602849c-4204-47bd-9c80-7af80031f25c	2	94906188	94906188	A	G	SNP	TEKT4	NM_144705.2	human	genbank	54_36p	+1	provisional	missense	c.1255	p.M419V	1.000	HMMPfam_Tektin	HMMPfam_Tektin	-	no_errors	41	1	2.38	60	53	46.90	3	0	0.00
OR2Y1	0	genome.wustl.edu	36	5	180099606	180099606	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2811-03B-01W-0728-08	TCGA-AB-2811-11B-01W-0728-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	7e9b79b7-d6b7-4365-8597-dad296c4b3f5	9602849c-4204-47bd-9c80-7af80031f25c	5	180099606	180099606	C	T	SNP	OR2Y1	NM_001001657.1	human	genbank	54_36p	-1	provisional	nonsense	c.59	p.W20*	0.001	superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors	183	23	11.17	307	257	45.57	NA	NA	NA
DOCK4	0	genome.wustl.edu	36	7	111168880	111168880	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2811-03B-01W-0728-08	TCGA-AB-2811-11B-01W-0728-08	G	G	G	T	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	7e9b79b7-d6b7-4365-8597-dad296c4b3f5	9602849c-4204-47bd-9c80-7af80031f25c	7	111168880	111168880	G	T	SNP	DOCK4	NM_014705.3	human	genbank	54_36p	-1	reviewed	missense	c.4844	p.A1615E	0.994	NULL	HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_SH3_2	-	no_errors	50	1	1.96	126	111	46.84	NA	NA	NA
PTCH1	0	genome.wustl.edu	36	9	97260346	97260346	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2811-03B-01W-0728-08	TCGA-AB-2811-11B-01W-0728-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	7e9b79b7-d6b7-4365-8597-dad296c4b3f5	9602849c-4204-47bd-9c80-7af80031f25c	9	97260346	97260346	C	T	SNP	PTCH1	NM_000264.3	human	genbank	54_36p	-1	reviewed	missense	c.2938	p.G980S	1.000	HMMPfam_Patched	HMMPfam_Patched,superfamily_SSF82866	-	no_errors	172	23	11.56	132	107	44.77	1	0	0.00
CSRNP2	0	genome.wustl.edu	36	12	49743968	49743968	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2811-03B-01W-0728-08	TCGA-AB-2811-11B-01W-0728-08	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	7e9b79b7-d6b7-4365-8597-dad296c4b3f5	9602849c-4204-47bd-9c80-7af80031f25c	12	49743968	49743968	T	C	SNP	CSRNP2	NM_030809.1	human	genbank	54_36p	-1	provisional	missense	c.1460	p.E487G	0.750	NULL	NULL	-	no_errors	73	3	3.95	161	132	45.05	8	3	27.27
FLT3	0	genome.wustl.edu	36	13	27490642	27490642	+	Missense_Mutation	SNP	C	C	A	rs121913488		TCGA-AB-2811-03B-01W-0728-08	TCGA-AB-2811-11B-01W-0728-08	C	C	C	A	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	7e9b79b7-d6b7-4365-8597-dad296c4b3f5	9602849c-4204-47bd-9c80-7af80031f25c	13	27490642	27490642	C	A	SNP	FLT3	NM_004119.2	human	genbank	54_36p	-1	reviewed	missense	c.2503	p.D835Y	1.000	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726	-	no_errors	69	2	2.82	118	114	49.14	235	117	33.24
NPM1	0	genome.wustl.edu	36	5	170770152	170770153	+	Frame_Shift_Ins	INS	-	-	TCTG			TCGA-AB-2811-03B-01W-0728-08	TCGA-AB-2811-11B-01W-0728-08	-	-	-	TCTG	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	7e9b79b7-d6b7-4365-8597-dad296c4b3f5	9602849c-4204-47bd-9c80-7af80031f25c	5	170770152	170770153	-	TCTG	INS	NPM1	NM_002520.1	human	genbank	54_36p	+1	validated	frame_shift_ins	c.863_864	p.W288fs	1.000:1.000	NULL	HMMPfam_Nucleoplasmin,superfamily_Nucleoplasmin-like core domain	-	no_errors	NA	NA	NA	NA	NA	NA	NA	NA	NA