Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error NormalRefReads_WU NormalVarReads_WU NormalVAF_WU TumorRefReads_WU TumorVarReads_WU TumorVAF_WU RNARefReads_WU RNAVarReads_WU RNAVAF_WU NKRF 0 genome.wustl.edu 36 X 118607987 118607987 + Missense_Mutation SNP G G A TCGA-AB-2813-03B-01W-0728-08 TCGA-AB-2813-11B-01W-0728-08 G G G A G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 7e85a885-3db1-4382-a10d-7cdce016ddb4 fb24b4e8-ad6e-4397-97f4-1421fe8abb24 X 118607987 118607987 G A SNP NKRF NM_017544.2 human genbank 54_36p -1 validated missense c.1429 p.R477C 1.000 HMMSmart_SM00358,superfamily_dsRNA-binding domain-like HMMPfam_G-patch,HMMSmart_SM00443,HMMPfam_dsrm,HMMSmart_SM00358,HMMPfam_R3H,HMMSmart_SM00393,superfamily_dsRNA-binding domain-like,superfamily_R3H domain - no_errors 125 1 0.79 62 11 14.86 9 0 0.00 OR13H1 0 genome.wustl.edu 36 X 130505772 130505772 + Missense_Mutation SNP T T C TCGA-AB-2813-03B-01W-0728-08 TCGA-AB-2813-11B-01W-0728-08 T T T C T T Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 7e85a885-3db1-4382-a10d-7cdce016ddb4 fb24b4e8-ad6e-4397-97f4-1421fe8abb24 X 130505772 130505772 T C SNP OR13H1 NM_001004486.1 human genbank 54_36p +1 provisional missense c.44 p.I15T 0.890 superfamily_SSF81321 HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321 - no_errors 427 14 3.16 38 219 82.95 NA NA NA uc004ewl.1 0 genome.wustl.edu 36 X 130985068 130985068 + Missense_Mutation SNP G G C TCGA-AB-2813-03B-01W-0728-08 TCGA-AB-2813-11B-01W-0728-08 G G G C G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 7e85a885-3db1-4382-a10d-7cdce016ddb4 fb24b4e8-ad6e-4397-97f4-1421fe8abb24 X 130985068 130985068 G C SNP uc004ewl.1 ENST00000370887 human ensembl 54_36p +1 known missense c.82 p.G28R 0.001 NULL HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase - no_start_codon 55 1 1.79 2 18 90.00 1 15 93.75 GRIK3 0 genome.wustl.edu 36 1 37080106 37080106 + Missense_Mutation SNP G G A TCGA-AB-2813-03B-01W-0728-08 TCGA-AB-2813-11B-01W-0728-08 G G G A G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 7e85a885-3db1-4382-a10d-7cdce016ddb4 fb24b4e8-ad6e-4397-97f4-1421fe8abb24 1 37080106 37080106 G A SNP GRIK3 NM_000831.3 human genbank 54_36p -1 reviewed missense c.1348 p.R450W 1.000 HMMSmart_PBPe,HMMPfam_Lig_chan-Glu_bd,superfamily_SSF53850 HMMPfam_Lig_chan,HMMSmart_PBPe,HMMPfam_ANF_receptor,HMMPfam_Lig_chan-Glu_bd,superfamily_SSF53822,superfamily_SSF53850,superfamily_SSF55620 - no_errors 470 5 1.04 109 48 30.19 NA NA NA SPRR4 0 genome.wustl.edu 36 1 151211012 151211012 + Missense_Mutation SNP C C T TCGA-AB-2813-03B-01W-0728-08 TCGA-AB-2813-11B-01W-0728-08 C C C T C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 7e85a885-3db1-4382-a10d-7cdce016ddb4 fb24b4e8-ad6e-4397-97f4-1421fe8abb24 1 151211012 151211012 C T SNP SPRR4 NM_173080.1 human genbank 54_36p +1 provisional missense c.22 p.R8W 0.928 HMMPfam_Cornifin HMMPfam_Cornifin - no_errors 1083 29 2.59 203 137 39.83 NA NA NA ZNF518B 0 genome.wustl.edu 36 4 10054632 10054632 + Missense_Mutation SNP A A T TCGA-AB-2813-03B-01W-0728-08 TCGA-AB-2813-11B-01W-0728-08 A A A T A A Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 7e85a885-3db1-4382-a10d-7cdce016ddb4 fb24b4e8-ad6e-4397-97f4-1421fe8abb24 4 10054632 10054632 A T SNP ZNF518B NM_053042.2 human genbank 54_36p -1 validated missense c.2419 p.L807I 0.001 NULL HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 - no_errors 517 7 1.32 139 37 20.90 6 8 57.14 BBS12 0 genome.wustl.edu 36 4 123884068 123884068 + Missense_Mutation SNP A A G TCGA-AB-2813-03B-01W-0728-08 TCGA-AB-2813-11B-01W-0728-08 A A A G A A Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 7e85a885-3db1-4382-a10d-7cdce016ddb4 fb24b4e8-ad6e-4397-97f4-1421fe8abb24 4 123884068 123884068 A G SNP BBS12 NM_152618.2 human genbank 54_36p +1 validated missense c.1571 p.Y524C 0.790 HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like,superfamily_GroEL apical domain-like - no_errors 237 3 1.23 152 58 27.10 0 2 100.00 HLA-DRB1 0 genome.wustl.edu 36 6 32656522 32656522 + Missense_Mutation SNP T T G TCGA-AB-2813-03B-01W-0728-08 TCGA-AB-2813-11B-01W-0728-08 T T T G T T Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 7e85a885-3db1-4382-a10d-7cdce016ddb4 fb24b4e8-ad6e-4397-97f4-1421fe8abb24 6 32656522 32656522 T G SNP HLA-DRB1 NM_002124.2 human genbank 54_36p -1 reviewed missense c.742 p.I248L 0.956 NULL HMMPfam_MHC_II_beta,PatternScan_IG_MHC,HMMPfam_C1-set,HMMSmart_SM00407,superfamily_MHC antigen-recognition domain,superfamily_Immunoglobulin - no_errors 245 43 14.93 149 24 13.71 717 1 0.14 DLD 0 genome.wustl.edu 36 7 107343262 107343262 + Missense_Mutation SNP G G A TCGA-AB-2813-03B-01W-0728-08 TCGA-AB-2813-11B-01W-0728-08 G G G A G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 7e85a885-3db1-4382-a10d-7cdce016ddb4 fb24b4e8-ad6e-4397-97f4-1421fe8abb24 7 107343262 107343262 G A SNP DLD NM_000108.3 human genbank 54_36p +1 reviewed missense c.760 p.D254N 1.000 HMMPfam_Pyr_redox,HMMPfam_Pyr_redox_2,superfamily_SSF51905 HMMPfam_Pyr_redox,HMMPfam_Pyr_redox_dim,PatternScan_PYRIDINE_REDOX_1,HMMPfam_Pyr_redox_2,superfamily_FAD/NAD-linked_reductase_dimer,superfamily_SSF51905 - no_errors 220 3 1.33 118 71 37.17 48 36 42.35 ECM2 0 genome.wustl.edu 36 9 94319819 94319819 + Missense_Mutation SNP C C T TCGA-AB-2813-03B-01W-0728-08 TCGA-AB-2813-11B-01W-0728-08 C C C T C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 7e85a885-3db1-4382-a10d-7cdce016ddb4 fb24b4e8-ad6e-4397-97f4-1421fe8abb24 9 94319819 94319819 C T SNP ECM2 NM_001393.2 human genbank 54_36p -1 reviewed missense c.452 p.G151E 1.000 HMMPfam_VWC,HMMSmart_VWC,PatternScan_VWFC_1 HMMPfam_VWC,HMMSmart_VWC,PatternScan_VWFC_1,HMMPfam_LRR_1,superfamily_SSF52058 - no_errors 525 14 2.58 128 101 43.53 2 2 50.00 CACNA1B 0 genome.wustl.edu 36 9 140136178 140136178 + Missense_Mutation SNP G G A TCGA-AB-2813-03B-01W-0728-08 TCGA-AB-2813-11B-01W-0728-08 G G G A G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 7e85a885-3db1-4382-a10d-7cdce016ddb4 fb24b4e8-ad6e-4397-97f4-1421fe8abb24 9 140136178 140136178 G A SNP CACNA1B NM_000718.2 human genbank 54_36p +1 validated missense c.6926 p.R2309H 0.988 NULL HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_Voltage-gated potassium channels - no_errors 77 4 4.82 31 24 43.64 NA NA NA FAT3 0 genome.wustl.edu 36 11 92171938 92171938 + Silent SNP G G T TCGA-AB-2813-03B-01W-0728-08 TCGA-AB-2813-11B-01W-0728-08 G G G T G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 7e85a885-3db1-4382-a10d-7cdce016ddb4 fb24b4e8-ad6e-4397-97f4-1421fe8abb24 11 92171938 92171938 G T SNP FAT3 NM_001008781.2 human genbank 54_36p +1 validated silent c.6111 p.T2037 0.992 HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like PatternScan_ASX_HYDROXYL,HMMSmart_SM00282,HMMSmart_SM00179,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Cadherin-like,PatternScan_EGF_CA,superfamily_EGF/Laminin - no_errors 333 1 0.30 67 46 40.00 NA NA NA GNPTAB 0 genome.wustl.edu 36 12 100704096 100704096 + Silent SNP G G A TCGA-AB-2813-03B-01W-0728-08 TCGA-AB-2813-11B-01W-0728-08 G G G A G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 7e85a885-3db1-4382-a10d-7cdce016ddb4 fb24b4e8-ad6e-4397-97f4-1421fe8abb24 12 100704096 100704096 G A SNP GNPTAB NM_024312.3 human genbank 54_36p -1 validated silent c.396 p.H132 1.000 NULL HMMPfam_Notch,HMMSmart_SM00004,superfamily_Notch domain,HMMPfam_DMAP_binding,PatternScan_EF_HAND_1 - no_errors 791 9 1.12 194 130 39.88 56 38 40.43 OR11H12 0 genome.wustl.edu 36 14 18447885 18447885 + Missense_Mutation SNP G G A TCGA-AB-2813-03B-01W-0728-08 TCGA-AB-2813-11B-01W-0728-08 G G G A G G Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 7e85a885-3db1-4382-a10d-7cdce016ddb4 fb24b4e8-ad6e-4397-97f4-1421fe8abb24 14 18447885 18447885 G A SNP OR11H12 NM_001013354.1 human genbank 54_36p +1 provisional missense c.292 p.V98I 0.016 HMMPfam_7tm_1,superfamily_SSF81321 HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321 - no_errors 154 1 0.65 64 29 30.53 NA NA NA SLC38A6 0 genome.wustl.edu 36 14 60586994 60586994 + Missense_Mutation SNP T T A TCGA-AB-2813-03B-01W-0728-08 TCGA-AB-2813-11B-01W-0728-08 T T T A T T Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 7e85a885-3db1-4382-a10d-7cdce016ddb4 fb24b4e8-ad6e-4397-97f4-1421fe8abb24 14 60586994 60586994 T A SNP SLC38A6 NM_153811.1 human genbank 54_36p +1 provisional missense c.937 p.S313T 1.000 HMMPfam_Aa_trans HMMPfam_Aa_trans - no_errors 665 15 2.19 155 86 35.39 4 8 66.67 TP53 0 genome.wustl.edu 36 17 7519128 7519128 + Missense_Mutation SNP C C T TCGA-AB-2813-03B-01W-0728-08 TCGA-AB-2813-11B-01W-0728-08 C C C T C C Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 7e85a885-3db1-4382-a10d-7cdce016ddb4 fb24b4e8-ad6e-4397-97f4-1421fe8abb24 17 7519128 7519128 C T SNP TP53 NM_000546.4 human genbank 54_36p -1 reviewed missense c.527 p.C176Y 1.000 superfamily_p53-like transcription factors,HMMPfam_P53 PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD - no_errors 691 18 2.49 46 156 76.47 1 81 98.78 MYO5B 0 genome.wustl.edu 36 18 45772699 45772699 + Missense_Mutation SNP T T C TCGA-AB-2813-03B-01W-0728-08 TCGA-AB-2813-11B-01W-0728-08 T T T C T T Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 7e85a885-3db1-4382-a10d-7cdce016ddb4 fb24b4e8-ad6e-4397-97f4-1421fe8abb24 18 45772699 45772699 T C SNP MYO5B NM_001080467.1 human genbank 54_36p -1 provisional missense c.713 p.N238S 1.000 HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_DIL,superfamily_P-loop containing nucleoside triphosphate hydrolases - no_errors 1810 20 1.09 96 168 61.99 1 0 0.00 KIAA1683 0 genome.wustl.edu 36 19 18237918 18237918 + Missense_Mutation SNP T T C TCGA-AB-2813-03B-01W-0728-08 TCGA-AB-2813-11B-01W-0728-08 T T T C T T Verified Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq 1 dbGAP Illumina HiSeq 7e85a885-3db1-4382-a10d-7cdce016ddb4 fb24b4e8-ad6e-4397-97f4-1421fe8abb24 19 18237918 18237918 T C SNP KIAA1683 NM_025249.1 human genbank 54_36p -1 validated missense c.1432 p.K478E 0.020 NULL HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases - no_errors 517 13 2.44 92 53 36.55 3 2 40.00