Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
MT-CO2	0	genome.wustl.edu	36	MT	7962	7962	+	Silent	SNP	T	T	C			TCGA-AB-2814-03D-01W-0755-09	TCGA-AB-2814-11D-01W-0755-09	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	604f0c72-efc7-4868-bc54-79d8f3f3507b	8fb40399-ec65-44a3-9ca3-700a7728c333	MT	7962	7962	T	C	SNP	MT-CO2	ENST00000361739	human	ensembl	54_36p	+1	known	silent	c.376	p.L126	NULL	HMMPfam_COX2,superfamily_Cupredoxins	PatternScan_COX2,HMMPfam_COX2,superfamily_Cupredoxins,HMMPfam_COX2_TM,superfamily_Cytochrome^^_^^c^^_^^oxidase^^_^^subunit^^_^^II-like^^_^^transmembrane^^_^^region	-	no_errors	2573	33	1.26	227	1109	82.09	NA	NA	NA
SHROOM2	0	genome.wustl.edu	36	X	9822449	9822449	+	Silent	SNP	C	C	A			TCGA-AB-2814-03D-01W-0755-09	TCGA-AB-2814-11D-01W-0755-09	C	C	C	A	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	604f0c72-efc7-4868-bc54-79d8f3f3507b	8fb40399-ec65-44a3-9ca3-700a7728c333	X	9822449	9822449	C	A	SNP	SHROOM2	NM_001649.2	human	genbank	54_36p	+1	reviewed	silent	c.501	p.R167	0.890	NULL	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_ASD2,HMMPfam_ASD1	-	no_errors	31	0	0.00	81	35	30.17	NA	NA	NA
HSD3B1	0	genome.wustl.edu	36	1	119855801	119855801	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2814-03D-01W-0755-09	TCGA-AB-2814-11D-01W-0755-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	604f0c72-efc7-4868-bc54-79d8f3f3507b	8fb40399-ec65-44a3-9ca3-700a7728c333	1	119855801	119855801	G	A	SNP	HSD3B1	NM_000862.2	human	genbank	54_36p	+1	validated	missense	c.298	p.V100I	0.976	HMMPfam_3Beta_HSD,superfamily_NAD(P)-bd	HMMPfam_3Beta_HSD,superfamily_NAD(P)-bd	-	no_errors	170	0	0.00	288	84	22.40	NA	NA	NA
LOC730167	0	genome.wustl.edu	36	1	174852074	174852074	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2814-03D-01W-0755-09	TCGA-AB-2814-11D-01W-0755-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	604f0c72-efc7-4868-bc54-79d8f3f3507b	8fb40399-ec65-44a3-9ca3-700a7728c333	1	174852074	174852074	G	A	SNP	LOC730167	XM_001134386.1	human	genbank	54_36p	-1	model	missense	c.466	p.R156C	1.000	superfamily_(Phosphotyrosine protein) phosphatases II	superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors	154	1	0.65	212	137	39.03	1	0	0.00
ATP11B	0	genome.wustl.edu	36	3	184065947	184065947	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2814-03D-01W-0755-09	TCGA-AB-2814-11D-01W-0755-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	604f0c72-efc7-4868-bc54-79d8f3f3507b	8fb40399-ec65-44a3-9ca3-700a7728c333	3	184065947	184065947	G	A	SNP	ATP11B	NM_014616.1	human	genbank	54_36p	+1	validated	missense	c.1210	p.V404M	1.000	HMMPfam_Hydrolase,superfamily_SSF56784	HMMPfam_Hydrolase,HMMPfam_E1-E2_ATPase,PatternScan_ATPASE_E1_E2,superfamily_SSF56784,superfamily_SSF81653,superfamily_SSF81660	-	no_errors	50	0	0.00	94	43	31.16	53	38	41.76
LOC100133718	0	genome.wustl.edu	36	4	17774	17774	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2814-03D-01W-0755-09	TCGA-AB-2814-11D-01W-0755-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	604f0c72-efc7-4868-bc54-79d8f3f3507b	8fb40399-ec65-44a3-9ca3-700a7728c333	4	17774	17774	G	A	SNP	LOC100133718	XM_001713866.1	human	genbank	54_36p	-1	model	missense	c.88	p.P30S	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon	377	33	8.05	1078	132	10.81	NA	NA	NA
LOC645181	0	genome.wustl.edu	36	5	84881024	84881024	+	RNA	SNP	C	C	T			TCGA-AB-2814-03D-01W-0755-09	TCGA-AB-2814-11D-01W-0755-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	604f0c72-efc7-4868-bc54-79d8f3f3507b	8fb40399-ec65-44a3-9ca3-700a7728c333	5	84881024	84881024	C	T	SNP	LOC645181	XR_017382.2	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.618	-	-	-	pseudogene	33	1	2.86	71	47	39.50	8	0	0.00
PMPCB	0	genome.wustl.edu	36	7	102727130	102727130	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2814-03D-01W-0755-09	TCGA-AB-2814-11D-01W-0755-09	G	G	G	T	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	604f0c72-efc7-4868-bc54-79d8f3f3507b	8fb40399-ec65-44a3-9ca3-700a7728c333	7	102727130	102727130	G	T	SNP	PMPCB	NM_004279.2	human	genbank	54_36p	+1	reviewed	missense	c.245	p.G82V	1.000	superfamily_Metalloenz_metal-bd,HMMPfam_Peptidase_M16	PatternScan_INSULINASE,HMMPfam_Peptidase_M16_C,superfamily_Metalloenz_metal-bd,HMMPfam_Peptidase_M16	-	no_errors	94	1	1.05	130	63	32.47	57	75	56.82
CACNA1B	0	genome.wustl.edu	36	9	140063588	140063588	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2814-03D-01W-0755-09	TCGA-AB-2814-11D-01W-0755-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	604f0c72-efc7-4868-bc54-79d8f3f3507b	8fb40399-ec65-44a3-9ca3-700a7728c333	9	140063588	140063588	C	T	SNP	CACNA1B	NM_000718.2	human	genbank	54_36p	+1	validated	missense	c.3710	p.S1237L	1.000	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels	HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_Voltage-gated potassium channels	-	no_errors	265	1	0.38	236	138	36.80	NA	NA	NA
FLT3	0	genome.wustl.edu	36	13	27490640	27490640	+	Missense_Mutation	SNP	A	A	C	rs121913487		TCGA-AB-2814-03D-01W-0755-09	TCGA-AB-2814-11D-01W-0755-09	A	A	A	C	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	604f0c72-efc7-4868-bc54-79d8f3f3507b	8fb40399-ec65-44a3-9ca3-700a7728c333	13	27490640	27490640	A	C	SNP	FLT3	NM_004119.2	human	genbank	54_36p	-1	reviewed	missense	c.2505	p.D835E	0.991	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726	-	no_errors	48	0	0.00	93	24	19.83	309	147	32.24
FAM65A	0	genome.wustl.edu	36	16	66136380	66136380	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2814-03D-01W-0755-09	TCGA-AB-2814-11D-01W-0755-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	604f0c72-efc7-4868-bc54-79d8f3f3507b	8fb40399-ec65-44a3-9ca3-700a7728c333	16	66136380	66136380	C	T	SNP	FAM65A	NM_024519.2	human	genbank	54_36p	+1	validated	missense	c.2890	p.R964W	0.018	NULL	superfamily_ARM-type_fold	-	no_errors	48	0	0.00	30	32	51.61	16	21	56.76
UPF1	0	genome.wustl.edu	36	19	18824815	18824815	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2814-03D-01W-0755-09	TCGA-AB-2814-11D-01W-0755-09	T	T	T	A	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	604f0c72-efc7-4868-bc54-79d8f3f3507b	8fb40399-ec65-44a3-9ca3-700a7728c333	19	18824815	18824815	T	A	SNP	UPF1	NM_002911.3	human	genbank	54_36p	+1	reviewed	missense	c.992	p.V331D	1.000	NULL	HMMPfam_ResIII,HMMPfam_UPF1_Zn_bind,superfamily_SSF52540	-	no_errors	40	0	0.00	51	31	37.80	55	42	43.30
TMPRSS15	0	genome.wustl.edu	36	21	18588511	18588511	+	Silent	SNP	G	G	A			TCGA-AB-2814-03D-01W-0755-09	TCGA-AB-2814-11D-01W-0755-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	604f0c72-efc7-4868-bc54-79d8f3f3507b	8fb40399-ec65-44a3-9ca3-700a7728c333	21	18588511	18588511	G	A	SNP	PRSS7	NM_002772.2	human	genbank	54_36p	-1	reviewed	silent	c.2433	p.G811	0.930	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases	HMMPfam_SEA,HMMSmart_SM00200,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,HMMPfam_MAM,HMMSmart_SM00137,PatternScan_MAM_1,HMMPfam_SRCR,HMMPfam_Trypsin,HMMSmart_SM00020,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module,superfamily_Trypsin-like serine proteases,HMMSmart_SM00202,superfamily_SRCR-like,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER,superfamily_SEA domain	-	no_errors	21	0	0.00	45	30	40.00	NA	NA	NA
BCORL1	0	genome.wustl.edu	36	X	128976217	128976218	+	Frame_Shift_Ins	INS	-	-	A			TCGA-AB-2814-03D-01W-0755-09	TCGA-AB-2814-11D-01W-0755-09	-	-	-	A	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	604f0c72-efc7-4868-bc54-79d8f3f3507b	8fb40399-ec65-44a3-9ca3-700a7728c333	X	128976217	128976218	-	A	INS	BCORL1	NM_021946.2	human	genbank	54_36p	+1	validated	frame_shift_ins	c.1788_1789	p.T596fs	0.002:0.198	NULL	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	-	no_errors	20	0	0.00	48	32	40.00	17	35	67.31