Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
MT-CO2	0	genome.wustl.edu	36	MT	8103	8103	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2820-03B-01W-0728-08	TCGA-AB-2820-11B-01W-0728-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	19900d81-576b-44c1-975d-a874c0b19b15	2f7227c5-2077-405c-ac7c-6589765d1f0b	MT	8103	8103	G	A	SNP	MT-CO2	ENST00000361739	human	ensembl	54_36p	+1	known	missense	c.517	p.D173N	NULL	PatternScan_COX2,HMMPfam_COX2,superfamily_Cupredoxins	PatternScan_COX2,HMMPfam_COX2,superfamily_Cupredoxins,HMMPfam_COX2_TM,superfamily_Cytochrome^^_^^c^^_^^oxidase^^_^^subunit^^_^^II-like^^_^^transmembrane^^_^^region	-	no_errors	1765	24	1.34	1705	644	27.24	NA	NA	NA
LOC100131656	0	genome.wustl.edu	36	X	40635696	40635696	+	RNA	SNP	G	G	A			TCGA-AB-2820-03B-01W-0728-08	TCGA-AB-2820-11B-01W-0728-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	19900d81-576b-44c1-975d-a874c0b19b15	2f7227c5-2077-405c-ac7c-6589765d1f0b	X	40635696	40635696	G	A	SNP	LOC100131656	XR_037406.1	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene	59	3	4.84	40	80	65.57	1	0	0.00
LRIF1	0	genome.wustl.edu	36	1	111294073	111294073	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2820-03B-01W-0728-08	TCGA-AB-2820-11B-01W-0728-08	C	C	C	G	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	19900d81-576b-44c1-975d-a874c0b19b15	2f7227c5-2077-405c-ac7c-6589765d1f0b	1	111294073	111294073	C	G	SNP	C1orf103	NM_018372.1	human	genbank	54_36p	-1	validated	missense	c.1792	p.D598H	0.000	NULL	NULL	-	no_errors	217	1	0.46	354	175	32.77	23	13	36.11
IL1RL2	0	genome.wustl.edu	36	2	102222123	102222123	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2820-03B-01W-0728-08	TCGA-AB-2820-11B-01W-0728-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	19900d81-576b-44c1-975d-a874c0b19b15	2f7227c5-2077-405c-ac7c-6589765d1f0b	2	102222123	102222123	C	T	SNP	IL1RL2	NM_003854.2	human	genbank	54_36p	+1	reviewed	missense	c.1718	p.T573M	0.000	NULL	HMMPfam_TIR,HMMSmart_TIR,superfamily_TIR,HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726	-	no_errors	126	2	1.56	98	50	33.56	NA	NA	NA
MFN1	0	genome.wustl.edu	36	3	180562900	180562900	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2820-03B-01W-0728-08	TCGA-AB-2820-11B-01W-0728-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	19900d81-576b-44c1-975d-a874c0b19b15	2f7227c5-2077-405c-ac7c-6589765d1f0b	3	180562900	180562900	G	A	SNP	MFN1	NM_033540.2	human	genbank	54_36p	+1	reviewed	missense	c.472	p.V158I	1.000	HMMPfam_Dynamin_N,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_Dynamin_N,HMMPfam_Fzo_mitofusin,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	123	2	1.60	105	74	40.66	14	15	50.00
CEP170P1	0	genome.wustl.edu	36	4	44736	44736	+	RNA	SNP	G	G	A			TCGA-AB-2820-03B-01W-0728-08	TCGA-AB-2820-11B-01W-0728-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	19900d81-576b-44c1-975d-a874c0b19b15	2f7227c5-2077-405c-ac7c-6589765d1f0b	4	44736	44736	G	A	SNP	CEP170L	XR_042173.2	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.002	-	-	-	pseudogene	313	38	10.80	577	95	14.01	7	0	0.00
GPR125	0	genome.wustl.edu	36	4	21998925	21998925	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2820-03B-01W-0728-08	TCGA-AB-2820-11B-01W-0728-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	19900d81-576b-44c1-975d-a874c0b19b15	2f7227c5-2077-405c-ac7c-6589765d1f0b	4	21998925	21998925	G	A	SNP	GPR125	NM_145290.2	human	genbank	54_36p	-1	validated	missense	c.3467	p.A1156V	0.998	NULL	HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_LRRCT,HMMSmart_SM00082,HMMPfam_7tm_2,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00409,superfamily_Hormone receptor domain (HRM Pfam 02793),superfamily_Immunoglobulin,superfamily_L domain-like	-	no_errors	92	1	1.08	131	115	46.00	1	3	75.00
GALNTL6	0	genome.wustl.edu	36	4	172972307	172972307	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2820-03B-01W-0728-08	TCGA-AB-2820-11B-01W-0728-08	A	A	A	G	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	19900d81-576b-44c1-975d-a874c0b19b15	2f7227c5-2077-405c-ac7c-6589765d1f0b	4	172972307	172972307	A	G	SNP	GALNTL6	NM_001034845.2	human	genbank	54_36p	+1	validated	missense	c.1	p.M1V	1.000	NULL	HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,HMMPfam_Glycos_transf_2,superfamily_Ricin B-like lectins,superfamily_Nucleotide-diphospho-sugar transferases	-	no_errors	33	0	0.00	49	44	47.31	NA	NA	NA
TTC26	0	genome.wustl.edu	36	7	138503645	138503645	+	Nonsense_Mutation	SNP	G	G	T			TCGA-AB-2820-03B-01W-0728-08	TCGA-AB-2820-11B-01W-0728-08	G	G	G	T	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	19900d81-576b-44c1-975d-a874c0b19b15	2f7227c5-2077-405c-ac7c-6589765d1f0b	7	138503645	138503645	G	T	SNP	TTC26	NM_024926.1	human	genbank	54_36p	+1	validated	nonsense	c.967	p.G323*	1.000	superfamily_SSF48452	superfamily_SSF48452	-	no_errors	191	5	2.54	104	104	49.76	NA	NA	NA
CSMD1	0	genome.wustl.edu	36	8	3188242	3188242	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2820-03B-01W-0728-08	TCGA-AB-2820-11B-01W-0728-08	A	A	A	T	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	19900d81-576b-44c1-975d-a874c0b19b15	2f7227c5-2077-405c-ac7c-6589765d1f0b	8	3188242	3188242	A	T	SNP	CSMD1	NM_033225.4	human	genbank	54_36p	-1	validated	missense	c.3616	p.F1206I	0.980	NULL	HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,superfamily_Complement control module/SCR domain	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	110	6	5.04	94	140	57.85	NA	NA	NA
KCNK9	0	genome.wustl.edu	36	8	140700045	140700045	+	Silent	SNP	G	G	T			TCGA-AB-2820-03B-01W-0728-08	TCGA-AB-2820-11B-01W-0728-08	G	G	G	T	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	19900d81-576b-44c1-975d-a874c0b19b15	2f7227c5-2077-405c-ac7c-6589765d1f0b	8	140700045	140700045	G	T	SNP	KCNK9	NM_016601.2	human	genbank	54_36p	-1	reviewed	silent	c.763	p.R255	0.977	superfamily_SSF81324	HMMPfam_Ion_trans_2,superfamily_SSF81324	-	no_errors	88	0	0.00	72	37	33.64	NA	NA	NA
SLC18A2	0	genome.wustl.edu	36	10	118993771	118993771	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2820-03B-01W-0728-08	TCGA-AB-2820-11B-01W-0728-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	19900d81-576b-44c1-975d-a874c0b19b15	2f7227c5-2077-405c-ac7c-6589765d1f0b	10	118993771	118993771	G	A	SNP	SLC18A2	NM_003054.3	human	genbank	54_36p	+1	provisional	missense	c.421	p.V141I	0.971	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	-	no_errors	90	2	2.17	54	70	55.56	0	3	100.00
IPO7	0	genome.wustl.edu	36	11	9411726	9411726	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2820-03B-01W-0728-08	TCGA-AB-2820-11B-01W-0728-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	19900d81-576b-44c1-975d-a874c0b19b15	2f7227c5-2077-405c-ac7c-6589765d1f0b	11	9411726	9411726	G	A	SNP	IPO7	NM_006391.2	human	genbank	54_36p	+1	reviewed	missense	c.1915	p.V639I	1.000	superfamily_ARM-type_fold	HMMPfam_IBN_N,superfamily_ARM-type_fold	-	no_errors	66	2	2.94	89	186	67.39	17	45	72.58
SUDS3	0	genome.wustl.edu	36	12	117325666	117325666	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2820-03B-01W-0728-08	TCGA-AB-2820-11B-01W-0728-08	C	C	C	A	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	19900d81-576b-44c1-975d-a874c0b19b15	2f7227c5-2077-405c-ac7c-6589765d1f0b	12	117325666	117325666	C	A	SNP	SUDS3	NM_022491.2	human	genbank	54_36p	+1	validated	missense	c.764	p.A255D	1.000	NULL	HMMPfam_Sds3	-	no_errors	99	0	0.00	117	117	50.00	11	5	31.25
TUBA3C	0	genome.wustl.edu	36	13	18649584	18649584	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2820-03B-01W-0728-08	TCGA-AB-2820-11B-01W-0728-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	19900d81-576b-44c1-975d-a874c0b19b15	2f7227c5-2077-405c-ac7c-6589765d1f0b	13	18649584	18649584	G	A	SNP	TUBA3C	NM_006001.1	human	genbank	54_36p	-1	reviewed	missense	c.539	p.A180V	1.000	HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like	HMMPfam_Tubulin,superfamily_Tubulin C-terminal domain-like,PatternScan_TUBULIN,HMMPfam_Tubulin_C,superfamily_Tubulin nucleotide-binding domain-like	-	no_errors	66	1	1.49	98	28	22.22	NA	NA	NA
TGM5	0	genome.wustl.edu	36	15	41313067	41313067	+	Silent	SNP	G	G	A			TCGA-AB-2820-03B-01W-0728-08	TCGA-AB-2820-11B-01W-0728-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	19900d81-576b-44c1-975d-a874c0b19b15	2f7227c5-2077-405c-ac7c-6589765d1f0b	15	41313067	41313067	G	A	SNP	TGM5	NM_201631.2	human	genbank	54_36p	-1	validated	silent	c.1986	p.L662	0.927	HMMPfam_Transglut_C,superfamily_Transglutaminase two C-terminal domains	HMMPfam_Transglut_N,HMMPfam_Transglut_core,HMMSmart_SM00460,HMMPfam_Transglut_C,superfamily_Transglutaminase two C-terminal domains,PatternScan_TRANSGLUTAMINASES,superfamily_E set domains,superfamily_Cysteine proteinases	-	no_errors	111	0	0.00	98	68	40.96	NA	NA	NA
SUZ12	0	genome.wustl.edu	36	17	27291451	27291451	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2820-03B-01W-0728-08	TCGA-AB-2820-11B-01W-0728-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	19900d81-576b-44c1-975d-a874c0b19b15	2f7227c5-2077-405c-ac7c-6589765d1f0b	17	27291451	27291451	G	A	SNP	SUZ12	NM_015355.2	human	genbank	54_36p	+1	reviewed	missense	c.308	p.R103Q	1.000	NULL	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,HMMPfam_VEFS-Box	-	no_errors	98	0	0.00	30	36	54.55	19	11	36.67
KIAA1683	0	genome.wustl.edu	36	19	18229587	18229587	+	Silent	SNP	G	G	T			TCGA-AB-2820-03B-01W-0728-08	TCGA-AB-2820-11B-01W-0728-08	G	G	G	T	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	19900d81-576b-44c1-975d-a874c0b19b15	2f7227c5-2077-405c-ac7c-6589765d1f0b	19	18229587	18229587	G	T	SNP	KIAA1683	NM_025249.1	human	genbank	54_36p	-1	validated	silent	c.2946	p.A982	0.384	HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	11	0	0.00	12	9	42.86	18	6	25.00
DAB2	0	genome.wustl.edu	36	5	39418786	39418787	+	Frame_Shift_Del	DEL	AC	AC	-			TCGA-AB-2820-03B-01W-0728-08	TCGA-AB-2820-11B-01W-0728-08	AC	AC	AC	-	AC	AC	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	19900d81-576b-44c1-975d-a874c0b19b15	2f7227c5-2077-405c-ac7c-6589765d1f0b	5	39418786	39418787	AC	-	DEL	DAB2	NM_001343.2	human	genbank	54_36p	-1	validated	frame_shift_del	c.1032_1031	p.G344fs	0.972:1.000	NULL	PatternScan_PFKB_KINASES_1,HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like	-	no_errors	0	0	0.00	0	76	40.43	0	0	0.00
TP53	0	genome.wustl.edu	36	17	7518906	7518907	+	Frame_Shift_Ins	INS	-	-	GCGGCTC			TCGA-AB-2820-03B-01W-0728-08	TCGA-AB-2820-11B-01W-0728-08	-	-	-	GCGGCTC	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	19900d81-576b-44c1-975d-a874c0b19b15	2f7227c5-2077-405c-ac7c-6589765d1f0b	17	7518906	7518907	-	GCGGCTC	INS	TP53	NM_000546.4	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.668_667	p.P223fs	0.987:0.989	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors	NA	NA	NA	NA	NA	NA	NA	NA	NA