Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
SCN1A	0	genome.wustl.edu	36	2	166611561	166611561	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2857-03B-01W-0728-08	TCGA-AB-2857-11B-01W-0729-08	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	44964375-c1fd-44e2-a9a1-e1adfb712b91	b03885b4-e42c-4126-a847-29b1eda5f527	2	166611561	166611561	T	C	SNP	SCN1A	NM_006920.4	human	genbank	54_36p	-1	validated	missense	c.1342	p.I448V	1.000	NULL	HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,PatternScan_RIBONUCLEASE_P,superfamily_SSF81324	-	no_errors	231	3	1.28	85	43	33.33	NA	NA	NA
DOCK10	0	genome.wustl.edu	36	2	225426080	225426080	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2857-03B-01W-0728-08	TCGA-AB-2857-11B-01W-0729-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	44964375-c1fd-44e2-a9a1-e1adfb712b91	b03885b4-e42c-4126-a847-29b1eda5f527	2	225426080	225426080	C	T	SNP	DOCK10	NM_014689.2	human	genbank	54_36p	-1	validated	missense	c.1892	p.C631Y	1.000	NULL	HMMPfam_PH,HMMSmart_SM00233,HMMPfam_Ded_cyto,superfamily_PH domain-like	-	no_errors	253	0	0.00	181	81	30.34	26	8	23.53
COL25A1	0	genome.wustl.edu	36	4	110039758	110039758	+	Splice_Site	SNP	C	C	T			TCGA-AB-2857-03B-01W-0728-08	TCGA-AB-2857-11B-01W-0729-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	44964375-c1fd-44e2-a9a1-e1adfb712b91	b03885b4-e42c-4126-a847-29b1eda5f527	4	110039758	110039758	C	T	SNP	COL25A1	NM_198721.2	human	genbank	54_36p	-1	validated	splice_site	c.861+1	e14+1	0.998	-	-	-	no_errors	288	1	0.35	137	56	28.72	NA	NA	NA
LOC100128744	0	genome.wustl.edu	36	7	136499727	136499727	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2857-03B-01W-0728-08	TCGA-AB-2857-11B-01W-0729-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	44964375-c1fd-44e2-a9a1-e1adfb712b91	b03885b4-e42c-4126-a847-29b1eda5f527	7	136499727	136499727	C	T	SNP	LOC100128744	XM_001718911.1	human	genbank	54_36p	+1	model	missense	c.1061	p.P354L	0.999	HMMPfam_Ribosomal_L18e,superfamily_Ribosomal proteins L15p and L18e	HMMPfam_Ribosomal_L18e,superfamily_Ribosomal proteins L15p and L18e	-	no_errors	56	0	0.00	36	25	40.32	NA	NA	NA
CSMD3	0	genome.wustl.edu	36	8	113747769	113747769	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2857-03B-01W-0728-08	TCGA-AB-2857-11B-01W-0729-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	44964375-c1fd-44e2-a9a1-e1adfb712b91	b03885b4-e42c-4126-a847-29b1eda5f527	8	113747769	113747769	C	T	SNP	CSMD3	NM_198123.2	human	genbank	54_36p	-1	validated	missense	c.2729	p.G910E	1.000	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain	HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,PatternScan_GLYCOSYL_HYDROL_F10,superfamily_Complement control module/SCR domain	-	no_errors	181	0	0.00	98	56	36.13	NA	NA	NA
JMJD1C	0	genome.wustl.edu	36	10	64637174	64637174	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2857-03B-01W-0728-08	TCGA-AB-2857-11B-01W-0729-08	A	A	A	G	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	44964375-c1fd-44e2-a9a1-e1adfb712b91	b03885b4-e42c-4126-a847-29b1eda5f527	10	64637174	64637174	A	G	SNP	JMJD1C	NM_032776.2	human	genbank	54_36p	-1	validated	missense	c.4261	p.S1421P	1.000	NULL	HMMSmart_SM00558,HMMPfam_JmjC,superfamily_Clavaminate synthase-like	-	no_errors	164	0	0.00	76	31	28.70	40	27	40.30
LRIT1	0	genome.wustl.edu	36	10	85984050	85984050	+	Silent	SNP	G	G	A			TCGA-AB-2857-03B-01W-0728-08	TCGA-AB-2857-11B-01W-0729-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	44964375-c1fd-44e2-a9a1-e1adfb712b91	b03885b4-e42c-4126-a847-29b1eda5f527	10	85984050	85984050	G	A	SNP	LRIT1	NM_015613.2	human	genbank	54_36p	-1	validated	silent	c.654	p.G218	0.078	HMMSmart_LRRCT,superfamily_SSF52058	HMMSmart_LRRNT,HMMSmart_LRRCT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_IGc2,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like,HMMPfam_ig,superfamily_SSF48726,superfamily_SSF52058	-	no_errors	21	0	0.00	44	24	34.78	NA	NA	NA
MICAL2	0	genome.wustl.edu	36	11	12204389	12204389	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2857-03B-01W-0728-08	TCGA-AB-2857-11B-01W-0729-08	C	C	C	G	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	44964375-c1fd-44e2-a9a1-e1adfb712b91	b03885b4-e42c-4126-a847-29b1eda5f527	11	12204389	12204389	C	G	SNP	MICAL2	NM_014632.2	human	genbank	54_36p	+1	provisional	missense	c.1784	p.T595R	0.995	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain	HMMPfam_CH,HMMSmart_SM00033,HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_FAD_binding_3,superfamily_Calponin-homology domain CH-domain,superfamily_FAD/NAD(P)-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors	215	0	0.00	72	20	21.51	28	16	36.36
KRT75	0	genome.wustl.edu	36	12	51114119	51114119	+	Silent	SNP	G	G	A			TCGA-AB-2857-03B-01W-0728-08	TCGA-AB-2857-11B-01W-0729-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	44964375-c1fd-44e2-a9a1-e1adfb712b91	b03885b4-e42c-4126-a847-29b1eda5f527	12	51114119	51114119	G	A	SNP	KRT75	NM_004693.2	human	genbank	54_36p	-1	reviewed	silent	c.237	p.S79	0.002	NULL	superfamily_Prefoldin,HMMPfam_Filament,PatternScan_IF	-	no_errors	111	0	0.00	63	21	25.00	NA	NA	NA
MMP25	0	genome.wustl.edu	36	16	3040422	3040422	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2857-03B-01W-0728-08	TCGA-AB-2857-11B-01W-0729-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	44964375-c1fd-44e2-a9a1-e1adfb712b91	b03885b4-e42c-4126-a847-29b1eda5f527	16	3040422	3040422	C	T	SNP	MMP25	NM_022468.4	human	genbank	54_36p	+1	reviewed	missense	c.535	p.H179Y	0.993	HMMPfam_Peptidase_M10,HMMSmart_ZnMc,superfamily_SSF55486	superfamily_Hemopexin,HMMPfam_Peptidase_M10,PatternScan_CYSTEINE_SWITCH,HMMPfam_PG_binding_1,superfamily_PGBD_like,PatternScan_ZINC_PROTEASE,HMMSmart_ZnMc,PatternScan_HEMOPEXIN,HMMPfam_Hemopexin,HMMSmart_HX,superfamily_SSF55486	-	no_errors	122	1	0.81	28	11	27.50	10	3	23.08
CDH16	0	genome.wustl.edu	36	16	65503312	65503312	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2857-03B-01W-0728-08	TCGA-AB-2857-11B-01W-0729-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	44964375-c1fd-44e2-a9a1-e1adfb712b91	b03885b4-e42c-4126-a847-29b1eda5f527	16	65503312	65503312	C	T	SNP	CDH16	NM_004062.2	human	genbank	54_36p	-1	reviewed	missense	c.1781	p.R594Q	0.023	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like	-	no_errors	426	2	0.47	56	10	15.15	1	0	0.00
TP53	0	genome.wustl.edu	36	17	7531419	7531419	+	Splice_Site	SNP	C	C	T			TCGA-AB-2857-03B-01W-0728-08	TCGA-AB-2857-11B-01W-0729-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	44964375-c1fd-44e2-a9a1-e1adfb712b91	b03885b4-e42c-4126-a847-29b1eda5f527	17	7531419	7531419	C	T	SNP	TP53	NM_000546.4	human	genbank	54_36p	-1	reviewed	splice_site	c.1+1	e0+1	0.966	-	-	-	no_errors	57	0	0.00	17	20	54.05	0	0	0.00
COX10	0	genome.wustl.edu	36	17	14051012	14051012	+	Silent	SNP	C	C	T			TCGA-AB-2857-03B-01W-0728-08	TCGA-AB-2857-11B-01W-0729-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	44964375-c1fd-44e2-a9a1-e1adfb712b91	b03885b4-e42c-4126-a847-29b1eda5f527	17	14051012	14051012	C	T	SNP	COX10	NM_001303.3	human	genbank	54_36p	+1	reviewed	silent	c.1089	p.A363	0.993	HMMPfam_UbiA	HMMPfam_UbiA,PatternScan_UBIA	-	no_errors	42	0	0.00	20	16	44.44	4	6	60.00
KRT37	0	genome.wustl.edu	36	17	36831252	36831252	+	Silent	SNP	G	G	A			TCGA-AB-2857-03B-01W-0728-08	TCGA-AB-2857-11B-01W-0729-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	44964375-c1fd-44e2-a9a1-e1adfb712b91	b03885b4-e42c-4126-a847-29b1eda5f527	17	36831252	36831252	G	A	SNP	KRT37	NM_003770.4	human	genbank	54_36p	-1	reviewed	silent	c.1134	p.A378	0.997	HMMPfam_Filament	HMMPfam_Filament,PatternScan_IF	-	no_errors	105	0	0.00	147	22	12.94	NA	NA	NA
ZNF473	0	genome.wustl.edu	36	19	55241783	55241783	+	Silent	SNP	T	T	G			TCGA-AB-2857-03B-01W-0728-08	TCGA-AB-2857-11B-01W-0729-08	T	T	T	G	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	44964375-c1fd-44e2-a9a1-e1adfb712b91	b03885b4-e42c-4126-a847-29b1eda5f527	19	55241783	55241783	T	G	SNP	ZNF473	NM_001006656.1	human	genbank	54_36p	+1	validated	silent	c.2271	p.P757	0.001	superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors	483	0	0.00	142	33	18.86	10	10	50.00
BACH1	0	genome.wustl.edu	36	21	29636837	29636837	+	Silent	SNP	C	C	A			TCGA-AB-2857-03B-01W-0728-08	TCGA-AB-2857-11B-01W-0729-08	C	C	C	A	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	44964375-c1fd-44e2-a9a1-e1adfb712b91	b03885b4-e42c-4126-a847-29b1eda5f527	21	29636837	29636837	C	A	SNP	BACH1	NM_001186.1	human	genbank	54_36p	+1	reviewed	silent	c.2023	p.R675	0.016	NULL	HMMSmart_SM00225,HMMSmart_SM00338,PatternScan_BZIP_BASIC,superfamily_A DNA-binding domain in eukaryotic transcription factors,superfamily_POZ domain,HMMPfam_bZIP_1,HMMPfam_BTB	-	no_errors	90	0	0.00	104	49	31.61	20	15	42.86