Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
ITGB5	0	genome.wustl.edu	36	3	126010604	126010604	+	Silent	SNP	G	G	A			TCGA-AB-2881-03A-01W-0732-08	TCGA-AB-2881-11A-01W-0732-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	82b9b9ce-b995-45f0-bf39-53cb56684024	510d78d5-f5a3-4be9-bb94-19f320ca3252	3	126010604	126010604	G	A	SNP	ITGB5	NM_002213.3	human	genbank	54_36p	-1	provisional	silent	c.1218	p.S406	1.000	HMMPfam_Integrin_beta,HMMSmart_INB,superfamily_SSF69179	HMMSmart_VWA,HMMPfam_Integrin_beta,HMMSmart_INB,HMMSmart_PSI,HMMSmart_EGF,HMMPfam_Integrin_B_tail,superfamily_Integrin_bsu_tail,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,HMMPfam_Integrin_b_cyt,PatternScan_INTEGRIN_BETA,superfamily_SSF53300,superfamily_SSF57196,superfamily_SSF69179	-	no_errors	131	8	5.63	125	82	39.61	6	6	50.00
LRRC15	0	genome.wustl.edu	36	3	195561630	195561630	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2881-03A-01W-0732-08	TCGA-AB-2881-11A-01W-0732-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	82b9b9ce-b995-45f0-bf39-53cb56684024	510d78d5-f5a3-4be9-bb94-19f320ca3252	3	195561630	195561630	C	T	SNP	LRRC15	NM_130830.1	human	genbank	54_36p	-1	validated	missense	c.1438	p.E480K	0.003	NULL	HMMSmart_LRRNT,HMMSmart_LRRCT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058	-	no_errors	156	4	2.48	170	48	21.92	NA	NA	NA
KIT	0	genome.wustl.edu	36	4	55294077	55294077	+	Missense_Mutation	SNP	G	G	T	rs121913506		TCGA-AB-2881-03A-01W-0732-08	TCGA-AB-2881-11A-01W-0732-08	G	G	G	T	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	82b9b9ce-b995-45f0-bf39-53cb56684024	510d78d5-f5a3-4be9-bb94-19f320ca3252	4	55294077	55294077	G	T	SNP	KIT	NM_000222.2	human	genbank	54_36p	+1	reviewed	missense	c.2446	p.D816Y	1.000	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_III,HMMSmart_IGc2,HMMSmart_IG,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726	-	no_errors	53	2	3.64	111	40	26.32	172	71	29.22
KLHL2	0	genome.wustl.edu	36	4	166454642	166454642	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2881-03A-01W-0732-08	TCGA-AB-2881-11A-01W-0732-08	A	A	A	T	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	82b9b9ce-b995-45f0-bf39-53cb56684024	510d78d5-f5a3-4be9-bb94-19f320ca3252	4	166454642	166454642	A	T	SNP	KLHL2	NM_007246.2	human	genbank	54_36p	+1	provisional	missense	c.1483	p.N495Y	1.000	HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central	HMMSmart_BTB,HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central,superfamily_BTB/POZ_fold,HMMPfam_BACK,HMMPfam_BTB	-	no_errors	250	9	3.45	169	116	40.00	21	11	34.38
ESM1	0	genome.wustl.edu	36	5	54316851	54316851	+	Silent	SNP	C	C	T			TCGA-AB-2881-03A-01W-0732-08	TCGA-AB-2881-11A-01W-0732-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	82b9b9ce-b995-45f0-bf39-53cb56684024	510d78d5-f5a3-4be9-bb94-19f320ca3252	5	54316851	54316851	C	T	SNP	ESM1	NM_007036.1	human	genbank	54_36p	-1	reviewed	silent	c.252	p.Q84	0.995	HMMSmart_IB	HMMSmart_IB	-	no_errors	48	5	9.43	62	51	44.35	NA	NA	NA
C6orf170	0	genome.wustl.edu	36	6	121475960	121475960	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2881-03A-01W-0732-08	TCGA-AB-2881-11A-01W-0732-08	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	82b9b9ce-b995-45f0-bf39-53cb56684024	510d78d5-f5a3-4be9-bb94-19f320ca3252	6	121475960	121475960	T	C	SNP	C6orf170	NM_152730.4	human	genbank	54_36p	-1	validated	missense	c.3116	p.K1039R	1.000	NULL	superfamily_Ypt/Rab-GAP domain of gyp1p	-	no_errors	89	3	3.26	139	97	40.76	3	1	25.00
RUNX1T1	0	genome.wustl.edu	36	8	93073230	93073230	+	Nonsense_Mutation	SNP	G	G	T			TCGA-AB-2881-03A-01W-0732-08	TCGA-AB-2881-11A-01W-0732-08	G	G	G	T	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	82b9b9ce-b995-45f0-bf39-53cb56684024	510d78d5-f5a3-4be9-bb94-19f320ca3252	8	93073230	93073230	G	T	SNP	RUNX1T1	NM_175634.2	human	genbank	54_36p	-1	reviewed	nonsense	c.804	p.C268*	1.000	NULL	HMMPfam_zf-MYND,PatternScan_ZF_MYND_1,HMMPfam_TAFH,HMMSmart_SM00549,HMMPfam_NHR2	-	no_errors	161	10	5.78	154	102	39.38	NA	NA	NA
SOGA2	0	genome.wustl.edu	36	18	8796946	8796946	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2881-03A-01W-0732-08	TCGA-AB-2881-11A-01W-0732-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	82b9b9ce-b995-45f0-bf39-53cb56684024	510d78d5-f5a3-4be9-bb94-19f320ca3252	18	8796946	8796946	G	A	SNP	KIAA0802	NM_015210.3	human	genbank	54_36p	+1	predicted	missense	c.2492	p.R831H	0.050	NULL	NULL	-	no_errors	54	0	0.00	73	20	21.28	NA	NA	NA
GNA15	0	genome.wustl.edu	36	19	3101277	3101277	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2881-03A-01W-0732-08	TCGA-AB-2881-11A-01W-0732-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	82b9b9ce-b995-45f0-bf39-53cb56684024	510d78d5-f5a3-4be9-bb94-19f320ca3252	19	3101277	3101277	C	T	SNP	GNA15	NM_002068.2	human	genbank	54_36p	+1	validated	missense	c.479	p.A160V	0.608	HMMPfam_G-alpha,superfamily_Transducin (alpha subunit) insertion domain,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_G-alpha,superfamily_Transducin (alpha subunit) insertion domain,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	30	0	0.00	22	13	36.11	109	143	56.08