Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
MXRA5	0	genome.wustl.edu	36	X	3251845	3251845	+	Missense_Mutation	SNP	A	A	C			TCGA-AB-2889-03A-01W-0732-08	TCGA-AB-2889-11A-01W-0761-09	A	A	A	C	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	776282ec-8391-4382-8ba7-793058092bbe	cfbe10b5-e46e-4d4a-adb7-a4b4d7099fac	X	3251845	3251845	A	C	SNP	MXRA5	NM_015419.3	human	genbank	54_36p	-1	validated	missense	c.1881	p.H627Q	0.006	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	HMMSmart_SM00013,HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin,superfamily_L domain-like	-	no_errors	125	5	3.85	1	81	97.59	NA	NA	NA
ANK2	0	genome.wustl.edu	36	4	114495214	114495214	+	Silent	SNP	C	C	T			TCGA-AB-2889-03A-01W-0732-08	TCGA-AB-2889-11A-01W-0761-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	776282ec-8391-4382-8ba7-793058092bbe	cfbe10b5-e46e-4d4a-adb7-a4b4d7099fac	4	114495214	114495214	C	T	SNP	ANK2	NM_001148.1	human	genbank	54_36p	+1	reviewed	silent	c.5991	p.F1997	1.000	NULL	HMMPfam_Death,HMMSmart_DEATH,HMMPfam_ZU5,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,superfamily_DEATH_like,PatternScan_ALDEHYDE_DEHYDR_GLU	-	no_errors	214	7	3.17	65	63	49.22	NA	NA	NA
PCSK5	0	genome.wustl.edu	36	9	78127861	78127861	+	Silent	SNP	G	G	T			TCGA-AB-2889-03A-01W-0732-08	TCGA-AB-2889-11A-01W-0761-09	G	G	G	T	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	776282ec-8391-4382-8ba7-793058092bbe	cfbe10b5-e46e-4d4a-adb7-a4b4d7099fac	9	78127861	78127861	G	T	SNP	PCSK5	ENST00000376754	human	ensembl	54_36p	+1	known	silent	c.3285	p.S1095	0.000	HMMSmart_SM00261,superfamily_Growth factor receptor domain	HMMPfam_Peptidase_S8,PatternScan_SUBTILASE_SER,superfamily_Subtilisin-like,HMMPfam_P_proprotein,HMMSmart_SM00181,HMMSmart_SM00261,superfamily_Galactose-binding domain-like,superfamily_Growth factor receptor domain	-	no_errors	132	7	5.04	53	49	48.04	NA	NA	NA
ATRNL1	0	genome.wustl.edu	36	10	117476782	117476782	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2889-03A-01W-0732-08	TCGA-AB-2889-11A-01W-0761-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	776282ec-8391-4382-8ba7-793058092bbe	cfbe10b5-e46e-4d4a-adb7-a4b4d7099fac	10	117476782	117476782	G	A	SNP	ATRNL1	NM_207303.2	human	genbank	54_36p	+1	validated	missense	c.3830	p.R1277H	1.000	NULL	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,HMMPfam_Lectin_C,HMMSmart_SM00034,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMPfam_PSI,HMMSmart_SM00423,HMMSmart_SM00181,HMMPfam_Kelch_1,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_C-type lectin-like,superfamily_Plexin repeat,superfamily_EGF/Laminin	-	no_errors	96	5	4.95	56	35	38.04	NA	NA	NA
APBA2	0	genome.wustl.edu	36	15	27186269	27186269	+	Silent	SNP	C	C	A			TCGA-AB-2889-03A-01W-0732-08	TCGA-AB-2889-11A-01W-0761-09	C	C	C	A	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	776282ec-8391-4382-8ba7-793058092bbe	cfbe10b5-e46e-4d4a-adb7-a4b4d7099fac	15	27186269	27186269	C	A	SNP	APBA2	NM_005503.1	human	genbank	54_36p	+1	reviewed	silent	c.1872	p.T624	1.000	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMPfam_PID,HMMSmart_PTB,superfamily_SSF50729	-	no_errors	27	2	6.90	13	9	40.91	1	0	0.00
SALL1	0	genome.wustl.edu	36	16	49731960	49731960	+	Silent	SNP	C	C	T			TCGA-AB-2889-03A-01W-0732-08	TCGA-AB-2889-11A-01W-0761-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	776282ec-8391-4382-8ba7-793058092bbe	cfbe10b5-e46e-4d4a-adb7-a4b4d7099fac	16	49731960	49731960	C	T	SNP	SALL1	NM_002968.1	human	genbank	54_36p	-1	reviewed	silent	c.1674	p.P558	0.897	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors	215	6	2.71	40	37	48.05	NA	NA	NA