Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
MT-ATP6	0	genome.wustl.edu	36	MT	8706	8706	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2948-03A-01W-0755-09	TCGA-AB-2948-11A-01W-0755-09	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	7b0fb197-8465-430b-9da7-322f2d218729	dbbec382-9c71-4ce4-b439-9e8a6eece4b8	MT	8706	8706	T	C	SNP	MT-ATP6	ENST00000361899	human	ensembl	54_36p	+1	known	missense	c.179	p.M60T	NULL	HMMPfam_ATP-synt_A	HMMPfam_ATP-synt_A,PatternScan_ATPASE_A,superfamily_ATPase_F0_A	-	no_errors	5205	72	1.36	2476	273	9.87	NA	NA	NA
IDH2	0	genome.wustl.edu	36	15	88432938	88432938	+	Missense_Mutation	SNP	C	C	T	rs121913502		TCGA-AB-2948-03A-01W-0755-09	TCGA-AB-2948-11A-01W-0755-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	7b0fb197-8465-430b-9da7-322f2d218729	dbbec382-9c71-4ce4-b439-9e8a6eece4b8	15	88432938	88432938	C	T	SNP	IDH2	NM_002168.2	human	genbank	54_36p	-1	reviewed	missense	c.419	p.R140Q	1.000	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	HMMPfam_Iso_dh,PatternScan_IDH_IMDH,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	-	no_errors	75	15	16.30	32	28	46.67	178	146	44.92
PDCL3	0	genome.wustl.edu	36	2	100549450	100549451	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AB-2948-03A-01W-0755-09	TCGA-AB-2948-11A-01W-0755-09	-	-	-	C	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	7b0fb197-8465-430b-9da7-322f2d218729	dbbec382-9c71-4ce4-b439-9e8a6eece4b8	2	100549450	100549451	-	C	INS	PDCL3	NM_024065.4	human	genbank	54_36p	+1	validated	frame_shift_ins	c.60_61	p.K22fs	0.997:1.000	HMMPfam_Phosducin,superfamily_Thiordxn-like_fd	HMMPfam_Phosducin,superfamily_Thiordxn-like_fd	-	no_errors	26	0	0.00	34	3	8.11	1	0	0.00