Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
LRRN2	0	genome.wustl.edu	36	1	202854975	202854975	+	Silent	SNP	G	G	A			TCGA-AB-2970-03A-01D-0739-09	TCGA-AB-2970-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	8ace649f-6c0a-47a4-9ebb-081fd6f8a025	d0983a5d-cb05-4b25-8053-631d52627b28	1	202854975	202854975	G	A	SNP	LRRN2	NM_006338.2	human	genbank	54_36p	-1	reviewed	silent	c.769	p.L257	0.995	HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like	HMMPfam_LRRCT,HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,HMMSmart_SM00365,superfamily_Immunoglobulin,superfamily_L domain-like	-	no_errors	481	36	6.96324951644101	324	258	44.3298969072165	0	8	100.00
ENSG00000201010	0	genome.wustl.edu	36	2	48298360	48298360	+	RNA	SNP	A	A	G			TCGA-AB-2970-03A-01D-0739-09	TCGA-AB-2970-11A-01D-0739-09	A	A	A	G	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	8ace649f-6c0a-47a4-9ebb-081fd6f8a025	d0983a5d-cb05-4b25-8053-631d52627b28	2	48298360	48298360	A	G	SNP	ENSG00000201010	ENST00000364140	human	ensembl	54_36p	+1	novel	rna	NULL	NULL	1.000	-	-	-	no_errors	1276	202	13.66	560	462	45.21	NA	NA	NA
SNORD13	0	genome.wustl.edu	36	3	47267043	47267043	+	RNA	SNP	G	G	A			TCGA-AB-2970-03A-01D-0739-09	TCGA-AB-2970-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	8ace649f-6c0a-47a4-9ebb-081fd6f8a025	d0983a5d-cb05-4b25-8053-631d52627b28	3	47267043	47267043	G	A	SNP	SNORD13	ENST00000387814	human	ensembl	54_36p	-1	known	rna	NULL	NULL	0.210	-	-	-	pseudogene	367	32	8.02005012531328	284	238	45.5938697318008	5	0	0.00
SCUBE3	0	genome.wustl.edu	36	6	35320457	35320457	+	Silent	SNP	C	C	T			TCGA-AB-2970-03A-01D-0739-09	TCGA-AB-2970-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	8ace649f-6c0a-47a4-9ebb-081fd6f8a025	d0983a5d-cb05-4b25-8053-631d52627b28	6	35320457	35320457	C	T	SNP	SCUBE3	NM_152753.2	human	genbank	54_36p	+1	provisional	silent	c.2292	p.R764	1.000	HMMSmart_SM00181,superfamily_Growth factor receptor domain,HMMPfam_GCC2_GCC3	PatternScan_ASX_HYDROXYL,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Growth factor receptor domain,HMMPfam_GCC2_GCC3,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors	878	122	12.18	381	326	46.11	2	0	0.00
BCLAF1	0	genome.wustl.edu	36	6	136639071	136639071	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2970-03A-01D-0739-09	TCGA-AB-2970-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	8ace649f-6c0a-47a4-9ebb-081fd6f8a025	d0983a5d-cb05-4b25-8053-631d52627b28	6	136639071	136639071	G	A	SNP	BCLAF1	NM_014739.1	human	genbank	54_36p	-1	reviewed	missense	c.1285	p.R429W	1.000	NULL	NULL	-	no_errors	1318	90	6.37	623	155	19.87	53	56	51.38
MSR1	0	genome.wustl.edu	36	8	16022443	16022443	+	Silent	SNP	G	G	A			TCGA-AB-2970-03A-01D-0739-09	TCGA-AB-2970-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	8ace649f-6c0a-47a4-9ebb-081fd6f8a025	d0983a5d-cb05-4b25-8053-631d52627b28	8	16022443	16022443	G	A	SNP	MSR1	NM_138715.3	human	genbank	54_36p	-1	reviewed	silent	c.1077	p.H359	0.042	HMMPfam_SRCR,PatternScan_SRCR_1,HMMSmart_SM00202,superfamily_SRCR-like	HMMPfam_SRCR,PatternScan_SRCR_1,HMMPfam_Macscav_rec,HMMPfam_Collagen,HMMSmart_SM00202,superfamily_SRCR-like	-	no_errors	397	27	6.36792452830189	239	254	51.5212981744422	NA	NA	NA
EMX2OS	0	genome.wustl.edu	36	10	119239116	119239116	+	RNA	SNP	T	T	C			TCGA-AB-2970-03A-01D-0739-09	TCGA-AB-2970-11A-01D-0739-09	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	8ace649f-6c0a-47a4-9ebb-081fd6f8a025	d0983a5d-cb05-4b25-8053-631d52627b28	10	119239116	119239116	T	C	SNP	EMX2OS	NR_002791.2	human	genbank	54_36p	-1	provisional	rna	NULL	NULL	0.001	-	-	-	no_errors	685	37	5.12465373961219	497	451	47.5738396624473	0	0	0.00
WT1	0	genome.wustl.edu	36	11	32370187	32370187	+	Splice_Site	SNP	C	C	T			TCGA-AB-2970-03A-01D-0739-09	TCGA-AB-2970-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	8ace649f-6c0a-47a4-9ebb-081fd6f8a025	d0983a5d-cb05-4b25-8053-631d52627b28	11	32370187	32370187	C	T	SNP	WT1	NM_024426.3	human	genbank	54_36p	-1	reviewed	splice_site	c.1340-1	e9-1	1.000	-	-	-	no_errors	1126	137	10.80	311	239	43.38	5	3	37.50
PLEKHH1	0	genome.wustl.edu	36	14	67106471	67106471	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2970-03A-01D-0739-09	TCGA-AB-2970-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	8ace649f-6c0a-47a4-9ebb-081fd6f8a025	d0983a5d-cb05-4b25-8053-631d52627b28	14	67106471	67106471	G	A	SNP	PLEKHH1	NM_020715.2	human	genbank	54_36p	+1	validated	missense	c.1423	p.A475T	0.998	NULL	HMMPfam_MyTH4,HMMSmart_SM00139,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295,superfamily_PH domain-like	-	no_errors	793	114	12.56	363	313	46.30	NA	NA	NA
RUNX1	0	genome.wustl.edu	36	21	35181023	35181023	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2970-03A-01D-0739-09	TCGA-AB-2970-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	8ace649f-6c0a-47a4-9ebb-081fd6f8a025	d0983a5d-cb05-4b25-8053-631d52627b28	21	35181023	35181023	G	A	SNP	RUNX1	NM_001754.2	human	genbank	54_36p	-1	reviewed	missense	c.338	p.P113L	1.000	superfamily_p53-like transcription factors,HMMPfam_Runt	superfamily_p53-like transcription factors,HMMPfam_Runt,HMMPfam_RunxI	-	no_errors	312	36	10.3448275862069	39	368	90.4176904176904	6	280	97.90
BCOR	0	genome.wustl.edu	36	X	39818802	39818802	+	Frame_Shift_Del	DEL	C	C	-			TCGA-AB-2970-03A-01D-0739-09	TCGA-AB-2970-11A-01D-0739-09	C	C	C	-	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	8ace649f-6c0a-47a4-9ebb-081fd6f8a025	d0983a5d-cb05-4b25-8053-631d52627b28	X	39818802	39818802	C	-	DEL	BCOR	NM_017745.1	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.741	p.P248fs	1.000	NULL	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK	-	no_errors	999	113	10.01	254	230	45.28	2	57	82.61
FLT3	0	genome.wustl.edu	36	13	27506258	27506259	+	In_Frame_Ins	INS	-	-	GGCGATATTCATATTCTCTGAAATCAACGTAGAAGTACTCATTATCTGAGGAGCCGG			TCGA-AB-2970-03A-01D-0739-09	TCGA-AB-2970-11A-01D-0739-09	-	-	-	GGCGATATTCATATTCTCTGAAATCAACGTAGAAGTACTCATTATCTGAGGAGCCGG	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	8ace649f-6c0a-47a4-9ebb-081fd6f8a025	d0983a5d-cb05-4b25-8053-631d52627b28	13	27506258	27506259	-	GGCGATATTCATATTCTCTGAAATCAACGTAGAAGTACTCATTATCTGAGGAGCCGG	INS	FLT3	NM_004119.2	human	genbank	54_36p	-1	reviewed	in_frame_ins	c.1798_1797	p.599in_frame_insPAPQIMSTSTLISENMNIA	1.000:1.000	superfamily_Kinase_like	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726	-	no_errors	228	39	14.6067415730337	145	226	60.9164420485175	NA	NA	NA