Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
LOC648927	0	genome.wustl.edu	36	X	95115225	95115225	+	RNA	SNP	G	G	A			TCGA-AB-2997-03A-01D-0739-09	TCGA-AB-2997-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	5687e321-0c36-4a38-a4c5-d7a26171ac1c	d2461e36-f349-4f2b-ba07-92b745c07675	X	95115225	95115225	G	A	SNP	LOC648927	XR_038906.1	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.998	-	-	-	pseudogene	958	62	6.08	399	309	43.64	NA	NA	NA
SLC30A6	0	genome.wustl.edu	36	2	32298967	32298967	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2997-03A-01D-0739-09	TCGA-AB-2997-11A-01D-0739-09	A	A	A	G	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	5687e321-0c36-4a38-a4c5-d7a26171ac1c	d2461e36-f349-4f2b-ba07-92b745c07675	2	32298967	32298967	A	G	SNP	SLC30A6	NM_017964.2	human	genbank	54_36p	+1	provisional	missense	c.1067	p.H356R	1.000	NULL	HMMPfam_Cation_efflux	-	no_errors	926	63	6.37	569	418	42.31	NA	NA	NA
CUL3	0	genome.wustl.edu	36	2	225157935	225157935	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2997-03A-01D-0739-09	TCGA-AB-2997-11A-01D-0739-09	C	C	C	A	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	5687e321-0c36-4a38-a4c5-d7a26171ac1c	d2461e36-f349-4f2b-ba07-92b745c07675	2	225157935	225157935	C	A	SNP	CUL3	NM_003590.3	human	genbank	54_36p	-1	validated	missense	c.36	p.K12N	1.000	NULL	"HMMPfam_Cullin,PatternScan_CULLIN_1,HMMSmart_SM00182,superfamily_Cullin homology domain,superfamily_Cullin repeat,HMMPfam_Cullin_Nedd8,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors	199	16	7.44186046511628	102	92	47.4226804123711	NA	NA	NA
LOC100134687	0	genome.wustl.edu	36	7	6727252	6727252	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2997-03A-01D-0739-09	TCGA-AB-2997-11A-01D-0739-09	A	A	A	G	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	5687e321-0c36-4a38-a4c5-d7a26171ac1c	d2461e36-f349-4f2b-ba07-92b745c07675	7	6727252	6727252	A	G	SNP	LOC100134687	XM_001725648.1	human	genbank	54_36p	-1	model	missense	c.313	p.W105R	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon	1306	108	7.61	343	241	41.13	NA	NA	NA
DOK2	0	genome.wustl.edu	36	8	21825961	21825961	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2997-03A-01D-0739-09	TCGA-AB-2997-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	5687e321-0c36-4a38-a4c5-d7a26171ac1c	d2461e36-f349-4f2b-ba07-92b745c07675	8	21825961	21825961	G	A	SNP	DOK2	NM_003974.2	human	genbank	54_36p	-1	reviewed	missense	c.70	p.R24C	0.996	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729	HMMPfam_PH,HMMSmart_PH,HMMPfam_IRS,HMMSmart_PTBI,superfamily_SSF50729	-	no_errors	218	17	7.23404255319149	165	135	45	NA	NA	NA
MUC5B	0	genome.wustl.edu	36	11	1229284	1229284	+	Silent	SNP	C	C	T			TCGA-AB-2997-03A-01D-0739-09	TCGA-AB-2997-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	5687e321-0c36-4a38-a4c5-d7a26171ac1c	d2461e36-f349-4f2b-ba07-92b745c07675	11	1229284	1229284	C	T	SNP	MUC5B	NM_002458.1	human	genbank	54_36p	+1	validated	silent	c.14607	p.T4869	0.000	NULL	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,PatternScan_CTCK_1,HMMPfam_Cys_knot,HMMSmart_SM00215,superfamily_PMP inhibitors,HMMPfam_C8,HMMPfam_TIL	-	no_errors	210	33	13.5802469135802	21	263	92.6056338028169	NA	NA	NA
CNTN5	0	genome.wustl.edu	36	11	99450197	99450197	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2997-03A-01D-0739-09	TCGA-AB-2997-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	5687e321-0c36-4a38-a4c5-d7a26171ac1c	d2461e36-f349-4f2b-ba07-92b745c07675	11	99450197	99450197	C	T	SNP	CNTN5	NM_014361.2	human	genbank	54_36p	+1	reviewed	missense	c.1541	p.S514F	0.995	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_V-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors	566	46	7.51633986928105	352	290	45.1713395638629	NA	NA	NA
TPTE2	0	genome.wustl.edu	36	13	18910252	18910252	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2997-03A-01D-0739-09	TCGA-AB-2997-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	5687e321-0c36-4a38-a4c5-d7a26171ac1c	d2461e36-f349-4f2b-ba07-92b745c07675	13	18910252	18910252	C	T	SNP	TPTE2	NM_199254.1	human	genbank	54_36p	-1	validated	missense	c.1015	p.E339K	0.271	superfamily_(Phosphotyrosine protein) phosphatases II	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II,superfamily_Voltage-gated potassium channels	-	no_errors	381	32	7.74818401937046	213	165	43.6507936507937	NA	NA	NA
DIS3	0	genome.wustl.edu	36	13	72244339	72244339	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2997-03A-01D-0739-09	TCGA-AB-2997-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	5687e321-0c36-4a38-a4c5-d7a26171ac1c	d2461e36-f349-4f2b-ba07-92b745c07675	13	72244339	72244339	C	T	SNP	DIS3	NM_014953.1	human	genbank	54_36p	-1	validated	missense	c.1462	p.D488N	1.000	HMMPfam_RNB	HMMPfam_RNB,PatternScan_RIBONUCLEASE_II,HMMSmart_SM00670,superfamily_PIN domain-like	-	no_errors	714	34	4.55	519	414	44.37	NA	NA	NA
SNHG10	0	genome.wustl.edu	36	14	95069562	95069562	+	RNA	SNP	C	C	T			TCGA-AB-2997-03A-01D-0739-09	TCGA-AB-2997-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	5687e321-0c36-4a38-a4c5-d7a26171ac1c	d2461e36-f349-4f2b-ba07-92b745c07675	14	95069562	95069562	C	T	SNP	SNHG10	NR_003138.2	human	genbank	54_36p	-1	validated	rna	NULL	NULL	1.000	-	-	-	no_errors	502	44	8.05860805860806	223	277	55.4	NA	NA	NA
DNAH9	0	genome.wustl.edu	36	17	11513530	11513530	+	Missense_Mutation	SNP	T	T	G			TCGA-AB-2997-03A-01D-0739-09	TCGA-AB-2997-11A-01D-0739-09	T	T	T	G	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	5687e321-0c36-4a38-a4c5-d7a26171ac1c	d2461e36-f349-4f2b-ba07-92b745c07675	17	11513530	11513530	T	G	SNP	DNAH9	NM_001372.3	human	genbank	54_36p	+1	reviewed	missense	c.3047	p.L1016R	1.000	NULL	HMMSmart_SM00382,HMMPfam_Dynein_heavy,PatternScan_CPSASE_2,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_Spectrin repeat,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	1085	70	6.06	765	675	46.81	NA	NA	NA
LOC100132713	0	genome.wustl.edu	36	18	74365674	74365674	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2997-03A-01D-0739-09	TCGA-AB-2997-11A-01D-0739-09	C	C	C	G	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	5687e321-0c36-4a38-a4c5-d7a26171ac1c	d2461e36-f349-4f2b-ba07-92b745c07675	18	74365674	74365674	C	G	SNP	LOC100132713	XM_001714438.1	human	genbank	54_36p	+1	model	missense	c.975	p.S325R	0.005	NULL	NULL	-	no_errors	21	1	4.55	9	0	0.00	NA	NA	NA
PSG7	0	genome.wustl.edu	36	19	48131669	48131669	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2997-03A-01D-0739-09	TCGA-AB-2997-11A-01D-0739-09	G	G	G	T	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	5687e321-0c36-4a38-a4c5-d7a26171ac1c	d2461e36-f349-4f2b-ba07-92b745c07675	19	48131669	48131669	G	T	SNP	PSG7	NM_002783.2	human	genbank	54_36p	-1	reviewed	missense	c.157	p.L53I	0.003	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,HMMPfam_ig,superfamily_Immunoglobulin	-	pseudogene	142	8	5.33333333333333	95	103	52.020202020202	NA	NA	NA
MYBL2	0	genome.wustl.edu	36	20	41777325	41777325	+	Silent	SNP	G	G	A			TCGA-AB-2997-03A-01D-0739-09	TCGA-AB-2997-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	5687e321-0c36-4a38-a4c5-d7a26171ac1c	d2461e36-f349-4f2b-ba07-92b745c07675	20	41777325	41777325	G	A	SNP	MYBL2	NM_002466.2	human	genbank	54_36p	+1	reviewed	silent	c.1962	p.T654	0.000	NULL	HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding,HMMPfam_Cmyb_C	-	no_errors	362	40	9.95024875621891	232	187	44.6300715990453	NA	NA	NA
CELSR1	0	genome.wustl.edu	36	22	45144326	45144326	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2997-03A-01D-0739-09	TCGA-AB-2997-11A-01D-0739-09	G	G	G	T	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	5687e321-0c36-4a38-a4c5-d7a26171ac1c	d2461e36-f349-4f2b-ba07-92b745c07675	22	45144326	45144326	G	T	SNP	CELSR1	NM_014246.1	human	genbank	54_36p	-1	reviewed	missense	c.7799	p.P2600H	0.998	HMMPfam_7tm_2	PatternScan_ASX_HYDROXYL,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,HMMSmart_SM00282,HMMPfam_HRM,HMMSmart_SM00008,HMMSmart_SM00179,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Cadherin-like,superfamily_EGF/Laminin	-	no_errors	352	24	6.38297872340425	234	181	43.6144578313253	NA	NA	NA
AKAP13	0	genome.wustl.edu	36	15	84063349	84063355	+	Frame_Shift_Del	DEL	AAGATCA	AAGATCA	-			TCGA-AB-2997-03A-01D-0739-09	TCGA-AB-2997-11A-01D-0739-09	AAGATCA	AAGATCA	AAGATCA	-	AAGATCA	AAGATCA	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	5687e321-0c36-4a38-a4c5-d7a26171ac1c	d2461e36-f349-4f2b-ba07-92b745c07675	15	84063349	84063355	AAGATCA	-	DEL	AKAP13	NM_006738.4	human	genbank	54_36p	+1	reviewed	frame_shift_del	c.6052_6058	p.K2018fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain,HMMPfam_PH,HMMSmart_PH,superfamily_ANK,HMMPfam_C1_1,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,PatternScan_EF_HAND_1,HMMPfam_RII_binding_1,superfamily_SSF50729,superfamily_SSF57889	-	no_errors	735	61	7.66331658291457	411	336	44.9799196787149	NA	NA	NA