Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
SFMBT2	57713	hgsc.bcm.edu;broad.mit.edu	37	10	7214050	7214050	+	Missense_Mutation	SNP	C	C	T			TCGA-CS-4944-01A-01D-1468-08	TCGA-CS-4944-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	471d39e4-2d0b-4f56-8e98-216f5a1baf5d	c4d192e1-a280-4ca9-963d-dc5efaacb683	CTGGTCATCCCGGAGCTCGGA	0.692	10	19
LCOR	84458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	98709000	98709000	+	Missense_Mutation	SNP	C	C	G			TCGA-CS-4944-01A-01D-1468-08	TCGA-CS-4944-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	471d39e4-2d0b-4f56-8e98-216f5a1baf5d	c4d192e1-a280-4ca9-963d-dc5efaacb683	CTGACCAAGACTCACCTCTGG	0.483	77	125
CLIP1	6249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	122758652	122758652	+	Missense_Mutation	SNP	T	T	C			TCGA-CS-4944-01A-01D-1468-08	TCGA-CS-4944-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	471d39e4-2d0b-4f56-8e98-216f5a1baf5d	c4d192e1-a280-4ca9-963d-dc5efaacb683	TCCACCTTCATCTTGAGGTCT	0.343	132	197
TSHR	7253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	81610525	81610525	+	Missense_Mutation	SNP	G	G	T			TCGA-CS-4944-01A-01D-1468-08	TCGA-CS-4944-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	471d39e4-2d0b-4f56-8e98-216f5a1baf5d	c4d192e1-a280-4ca9-963d-dc5efaacb683	GCATACCGGGGGCAGAGGGTT	0.498	58	120
GABRG3	2567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	27574011	27574011	+	Missense_Mutation	SNP	T	T	C			TCGA-CS-4944-01A-01D-1468-08	TCGA-CS-4944-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	471d39e4-2d0b-4f56-8e98-216f5a1baf5d	c4d192e1-a280-4ca9-963d-dc5efaacb683	GGACGAACACTCCTGCCCGCT	0.557	14	31
FAN1	22909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	31202868	31202868	+	Missense_Mutation	SNP	A	A	G			TCGA-CS-4944-01A-01D-1468-08	TCGA-CS-4944-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	471d39e4-2d0b-4f56-8e98-216f5a1baf5d	c4d192e1-a280-4ca9-963d-dc5efaacb683	TCTGCTCCTGAACTAAAATCC	0.403	6	108
HPR	3250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	72110680	72110680	+	Silent	SNP	C	C	T			TCGA-CS-4944-01A-01D-1468-08	TCGA-CS-4944-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	471d39e4-2d0b-4f56-8e98-216f5a1baf5d	c4d192e1-a280-4ca9-963d-dc5efaacb683	CTGACCAATACGATTGCATAA	0.507	35	67
DMKN	93099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	36002345	36002345	+	Missense_Mutation	SNP	T	T	C			TCGA-CS-4944-01A-01D-1468-08	TCGA-CS-4944-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	471d39e4-2d0b-4f56-8e98-216f5a1baf5d	c4d192e1-a280-4ca9-963d-dc5efaacb683	TCACCTctgctgccaccactg	0.647	9	12
CDC42BPA	8476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	227348328	227348328	+	Silent	SNP	T	T	C			TCGA-CS-4944-01A-01D-1468-08	TCGA-CS-4944-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	471d39e4-2d0b-4f56-8e98-216f5a1baf5d	c4d192e1-a280-4ca9-963d-dc5efaacb683	TATTGTCAGGTTTAATGTCTC	0.284	50	99
OR14A16	284532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	247978653	247978653	+	Missense_Mutation	SNP	G	G	T			TCGA-CS-4944-01A-01D-1468-08	TCGA-CS-4944-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	471d39e4-2d0b-4f56-8e98-216f5a1baf5d	c4d192e1-a280-4ca9-963d-dc5efaacb683	TAGTGCAGAGGGTGACATATA	0.512	55	126
COL18A1	80781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	21	46925852	46925852	+	Missense_Mutation	SNP	G	G	A			TCGA-CS-4944-01A-01D-1468-08	TCGA-CS-4944-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	471d39e4-2d0b-4f56-8e98-216f5a1baf5d	c4d192e1-a280-4ca9-963d-dc5efaacb683	CTCTACGTCCGCGTGCAGAAC	0.667	45	95
WDR75	84128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	190313123	190313123	+	Silent	SNP	T	T	C			TCGA-CS-4944-01A-01D-1468-08	TCGA-CS-4944-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	471d39e4-2d0b-4f56-8e98-216f5a1baf5d	c4d192e1-a280-4ca9-963d-dc5efaacb683	TCTGTGTCTCTGGAGACTTTG	0.368	33	55
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-CS-4944-01A-01D-1468-08	TCGA-CS-4944-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	471d39e4-2d0b-4f56-8e98-216f5a1baf5d	c4d192e1-a280-4ca9-963d-dc5efaacb683	ATAAGCATGACGACCTATGAT	0.393	28	66
COL6A3	1293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	238280668	238280668	+	Missense_Mutation	SNP	C	C	T			TCGA-CS-4944-01A-01D-1468-08	TCGA-CS-4944-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	471d39e4-2d0b-4f56-8e98-216f5a1baf5d	c4d192e1-a280-4ca9-963d-dc5efaacb683	CTCTTCAATGCGGCTCCCCAG	0.632	28	40
SLC25A36	55186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	140682063	140682063	+	Missense_Mutation	SNP	A	A	G			TCGA-CS-4944-01A-01D-1468-08	TCGA-CS-4944-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	471d39e4-2d0b-4f56-8e98-216f5a1baf5d	c4d192e1-a280-4ca9-963d-dc5efaacb683	TTCAGCTGCAATGGCAGGTAT	0.289	45	85
UGT2A3	79799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	69795535	69795535	+	Missense_Mutation	SNP	T	T	C			TCGA-CS-4944-01A-01D-1468-08	TCGA-CS-4944-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	471d39e4-2d0b-4f56-8e98-216f5a1baf5d	c4d192e1-a280-4ca9-963d-dc5efaacb683	AAAGATCTATTCCCTCTTTTC	0.328	35	69
ZNF12	7559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	6737039	6737039	+	Missense_Mutation	SNP	T	T	A			TCGA-CS-4944-01A-01D-1468-08	TCGA-CS-4944-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	471d39e4-2d0b-4f56-8e98-216f5a1baf5d	c4d192e1-a280-4ca9-963d-dc5efaacb683	AACTTGCTGATAACATCCGGT	0.463	10	16
DLX5	1749	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	96651642	96651642	+	Missense_Mutation	SNP	C	C	A			TCGA-CS-4944-01A-01D-1468-08	TCGA-CS-4944-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	471d39e4-2d0b-4f56-8e98-216f5a1baf5d	c4d192e1-a280-4ca9-963d-dc5efaacb683	CTTTGGTTTGCCATTCACCAT	0.463	53	89
FAM83H	286077	broad.mit.edu;ucsc.edu	37	8	144808629	144808629	+	Missense_Mutation	SNP	C	C	T			TCGA-CS-4944-01A-01D-1468-08	TCGA-CS-4944-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	471d39e4-2d0b-4f56-8e98-216f5a1baf5d	c4d192e1-a280-4ca9-963d-dc5efaacb683	CAGTGACAGACGCCGCGGGCT	0.697	6	7
FAM179A	165186	broad.mit.edu;ucsc.edu	37	2	29247207	29247207	+	Missense_Mutation	SNP	G	G	A			TCGA-CS-4944-01A-01D-1468-08	TCGA-CS-4944-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	471d39e4-2d0b-4f56-8e98-216f5a1baf5d	c4d192e1-a280-4ca9-963d-dc5efaacb683	ACCCTTGCCCGCTCCCTGGTG	0.627	5	21
PIK3R1	5295	broad.mit.edu;hgsc.bcm.edu	37	5	67522794	67522795	+	Frame_Shift_Ins	INS	-	-	G			TCGA-CS-4944-01A-01D-1468-08	TCGA-CS-4944-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	471d39e4-2d0b-4f56-8e98-216f5a1baf5d	c4d192e1-a280-4ca9-963d-dc5efaacb683	CTCTTCCTGTTGCACCAGGTTC	0.455	36	98
KDM4C	23081	broad.mit.edu;hgsc.bcm.edu	37	9	7128074	7128075	+	Frame_Shift_Del	DEL	GG	GG	-			TCGA-CS-4944-01A-01D-1468-08	TCGA-CS-4944-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	471d39e4-2d0b-4f56-8e98-216f5a1baf5d	c4d192e1-a280-4ca9-963d-dc5efaacb683	AGAAGTCCAAGGCTTGCGAGAA	0.411	34	78