Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count KMT2A 4297 hgsc.bcm.edu;broad.mit.edu 37 11 118380710 118380710 + Missense_Mutation SNP A A G TCGA-CS-5390-01A-02D-1468-08 TCGA-CS-5390-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b0e64f0e-5a56-4e98-a5db-4d44bee595a9 43746417-c404-4b14-8a55-463e79f3a745 CTCCCCACTGATGCTTTGGCT 0.398 7 96 CSNK1A1L 122011 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 37678952 37678952 + Missense_Mutation SNP G G A TCGA-CS-5390-01A-02D-1468-08 TCGA-CS-5390-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b0e64f0e-5a56-4e98-a5db-4d44bee595a9 43746417-c404-4b14-8a55-463e79f3a745 TTACAGTGACGCCCAGTACCC 0.408 35 143 UGGT2 55757 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 96489363 96489363 + Nonsense_Mutation SNP G G A TCGA-CS-5390-01A-02D-1468-08 TCGA-CS-5390-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b0e64f0e-5a56-4e98-a5db-4d44bee595a9 43746417-c404-4b14-8a55-463e79f3a745 TTGGCTCTTTGTTTGGATTCA 0.358 23 46 TTLL5 23093 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 76349031 76349031 + Missense_Mutation SNP A A G TCGA-CS-5390-01A-02D-1468-08 TCGA-CS-5390-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b0e64f0e-5a56-4e98-a5db-4d44bee595a9 43746417-c404-4b14-8a55-463e79f3a745 TTTGTAGGCAATCTTTGGCAG 0.413 42 37 MINK1 50488 hgsc.bcm.edu;ucsc.edu 37 17 4797861 4797861 + Silent SNP G G T TCGA-CS-5390-01A-02D-1468-08 TCGA-CS-5390-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b0e64f0e-5a56-4e98-a5db-4d44bee595a9 43746417-c404-4b14-8a55-463e79f3a745 GCAAGAGCTCGTTCACGATGT 0.607 5 21 KRT9 3857 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 39725736 39725736 + Missense_Mutation SNP T T A TCGA-CS-5390-01A-02D-1468-08 TCGA-CS-5390-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b0e64f0e-5a56-4e98-a5db-4d44bee595a9 43746417-c404-4b14-8a55-463e79f3a745 CTGCTCATACTCCTGACGCAT 0.498 30 46 AGMAT 79814 hgsc.bcm.edu;broad.mit.edu 37 1 15904231 15904231 + Silent SNP G G A TCGA-CS-5390-01A-02D-1468-08 TCGA-CS-5390-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b0e64f0e-5a56-4e98-a5db-4d44bee595a9 43746417-c404-4b14-8a55-463e79f3a745 CTGGCGCATAGGCAGGATCCA 0.527 5 68 HOOK1 51361 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 60314160 60314160 + Missense_Mutation SNP G G A rs143143349 TCGA-CS-5390-01A-02D-1468-08 TCGA-CS-5390-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b0e64f0e-5a56-4e98-a5db-4d44bee595a9 43746417-c404-4b14-8a55-463e79f3a745 AATGCAGCACGTACACAATTA 0.308 42 21 LRRC7 57554 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 70452024 70452024 + Missense_Mutation SNP C C T TCGA-CS-5390-01A-02D-1468-08 TCGA-CS-5390-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b0e64f0e-5a56-4e98-a5db-4d44bee595a9 43746417-c404-4b14-8a55-463e79f3a745 CCTTGAGGACCTCTTATTGTC 0.328 25 21 FUBP1 8880 hgsc.bcm.edu;broad.mit.edu 37 1 78430845 78430845 + Nonsense_Mutation SNP C C A TCGA-CS-5390-01A-02D-1468-08 TCGA-CS-5390-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b0e64f0e-5a56-4e98-a5db-4d44bee595a9 43746417-c404-4b14-8a55-463e79f3a745 TTTCCCGGTCCATCGCCATGA 0.408 9 131 NRAS 4893 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 115256530 115256530 + Missense_Mutation SNP G G T rs121913254 TCGA-CS-5390-01A-02D-1468-08 TCGA-CS-5390-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b0e64f0e-5a56-4e98-a5db-4d44bee595a9 43746417-c404-4b14-8a55-463e79f3a745 TACTCTTCTTGTCCAGCTGTA 0.458 87 49 DIEXF 27042 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 210016932 210016932 + Missense_Mutation SNP C C G TCGA-CS-5390-01A-02D-1468-08 TCGA-CS-5390-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b0e64f0e-5a56-4e98-a5db-4d44bee595a9 43746417-c404-4b14-8a55-463e79f3a745 GAATTTTACCCACATCTGCGA 0.458 15 55 ANGPT4 51378 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 861878 861878 + Missense_Mutation SNP C C T TCGA-CS-5390-01A-02D-1468-08 TCGA-CS-5390-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b0e64f0e-5a56-4e98-a5db-4d44bee595a9 43746417-c404-4b14-8a55-463e79f3a745 GGCCCCAGAGCGCTGGATCTC 0.562 12 40 INO80B 83444 hgsc.bcm.edu;ucsc.edu 37 2 74682279 74682279 + Silent SNP G G A TCGA-CS-5390-01A-02D-1468-08 TCGA-CS-5390-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b0e64f0e-5a56-4e98-a5db-4d44bee595a9 43746417-c404-4b14-8a55-463e79f3a745 GCACCTCTGGGGCTATGGAGG 0.572 37 133 KCNH7 90134 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 163693238 163693238 + Missense_Mutation SNP C C T TCGA-CS-5390-01A-02D-1468-08 TCGA-CS-5390-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b0e64f0e-5a56-4e98-a5db-4d44bee595a9 43746417-c404-4b14-8a55-463e79f3a745 AATGATGGCACAGTTCTGCAC 0.423 18 60 MSTN 2660 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 190927295 190927295 + Missense_Mutation SNP T T G TCGA-CS-5390-01A-02D-1468-08 TCGA-CS-5390-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b0e64f0e-5a56-4e98-a5db-4d44bee595a9 43746417-c404-4b14-8a55-463e79f3a745 AACAGGTAAATATAAACACAG 0.323 40 82 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-CS-5390-01A-02D-1468-08 TCGA-CS-5390-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b0e64f0e-5a56-4e98-a5db-4d44bee595a9 43746417-c404-4b14-8a55-463e79f3a745 ATAAGCATGACGACCTATGAT 0.393 33 66 DNAH5 1767 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 13719099 13719099 + Missense_Mutation SNP T T C TCGA-CS-5390-01A-02D-1468-08 TCGA-CS-5390-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b0e64f0e-5a56-4e98-a5db-4d44bee595a9 43746417-c404-4b14-8a55-463e79f3a745 GCCTCGGTGGTCATCCAGAGG 0.473 54 86 FNDC9 408263 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 156770036 156770036 + Missense_Mutation SNP T T C TCGA-CS-5390-01A-02D-1468-08 TCGA-CS-5390-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b0e64f0e-5a56-4e98-a5db-4d44bee595a9 43746417-c404-4b14-8a55-463e79f3a745 TTCCTCCCTCTGACCAAGATC 0.612 64 88 FAM50B 26240 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 3850199 3850199 + Missense_Mutation SNP C C T TCGA-CS-5390-01A-02D-1468-08 TCGA-CS-5390-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b0e64f0e-5a56-4e98-a5db-4d44bee595a9 43746417-c404-4b14-8a55-463e79f3a745 GTTCTCGGCGCATTACGACGC 0.647 12 19 C2 717 hgsc.bcm.edu;ucsc.edu 37 6 31913064 31913064 + Missense_Mutation SNP T T G TCGA-CS-5390-01A-02D-1468-08 TCGA-CS-5390-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b0e64f0e-5a56-4e98-a5db-4d44bee595a9 43746417-c404-4b14-8a55-463e79f3a745 GACTTTCACATCAATCTCTTC 0.592 50 109 STK38 11329 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 36489539 36489539 + Missense_Mutation SNP C C A TCGA-CS-5390-01A-02D-1468-08 TCGA-CS-5390-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b0e64f0e-5a56-4e98-a5db-4d44bee595a9 43746417-c404-4b14-8a55-463e79f3a745 ATCTGCTTTACGGAGTATTTT 0.338 64 133 DNAH8 1769 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 38980113 38980113 + Silent SNP G G A TCGA-CS-5390-01A-02D-1468-08 TCGA-CS-5390-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b0e64f0e-5a56-4e98-a5db-4d44bee595a9 43746417-c404-4b14-8a55-463e79f3a745 ATCTAAAATTGGCCATTGAAG 0.348 47 95 ATG5 9474 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 106764041 106764041 + Nonsense_Mutation SNP G G A TCGA-CS-5390-01A-02D-1468-08 TCGA-CS-5390-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b0e64f0e-5a56-4e98-a5db-4d44bee595a9 43746417-c404-4b14-8a55-463e79f3a745 GTTGGAATTCGTCCAAACCAC 0.378 73 151 RSPH4A 345895 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 116938227 116938227 + Silent SNP A A G TCGA-CS-5390-01A-02D-1468-08 TCGA-CS-5390-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b0e64f0e-5a56-4e98-a5db-4d44bee595a9 43746417-c404-4b14-8a55-463e79f3a745 AGTCAGAAGGAAACACCTTTC 0.458 45 68 AOC1 26 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 150554515 150554515 + Silent SNP C C T TCGA-CS-5390-01A-02D-1468-08 TCGA-CS-5390-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b0e64f0e-5a56-4e98-a5db-4d44bee595a9 43746417-c404-4b14-8a55-463e79f3a745 CTGTGCTCTACGGCGGCTGGA 0.692 8 21 FAM83A 84985 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 124219482 124219482 + Missense_Mutation SNP C C T TCGA-CS-5390-01A-02D-1468-08 TCGA-CS-5390-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b0e64f0e-5a56-4e98-a5db-4d44bee595a9 43746417-c404-4b14-8a55-463e79f3a745 CGAGGAGTTCCGCCACCTCTA 0.672 11 15 NOTCH1 4851 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 139412203 139412203 + Splice_Site SNP C C T TCGA-CS-5390-01A-02D-1468-08 TCGA-CS-5390-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b0e64f0e-5a56-4e98-a5db-4d44bee595a9 43746417-c404-4b14-8a55-463e79f3a745 GGCCGACGCACCGGGCATGCA 0.667 9 67 BEND2 139105 hgsc.bcm.edu;broad.mit.edu 37 X 18221653 18221653 + Missense_Mutation SNP G G T TCGA-CS-5390-01A-02D-1468-08 TCGA-CS-5390-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b0e64f0e-5a56-4e98-a5db-4d44bee595a9 43746417-c404-4b14-8a55-463e79f3a745 AGATGACAAGGCTCTACCTGG 0.418 13 232 TAF9B 51616 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 77394339 77394339 + Splice_Site SNP C C T TCGA-CS-5390-01A-02D-1468-08 TCGA-CS-5390-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b0e64f0e-5a56-4e98-a5db-4d44bee595a9 43746417-c404-4b14-8a55-463e79f3a745 CATTAACTTACGGAAAGCAAA 0.328 44 73 ARMCX1 51309 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 100808652 100808652 + Missense_Mutation SNP G G A TCGA-CS-5390-01A-02D-1468-08 TCGA-CS-5390-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b0e64f0e-5a56-4e98-a5db-4d44bee595a9 43746417-c404-4b14-8a55-463e79f3a745 ACGTGAATTGGGTGGTGTCCC 0.388 106 206 PCSK6 5046 broad.mit.edu;ucsc.edu 37 15 101929754 101929754 + Missense_Mutation SNP G G A TCGA-CS-5390-01A-02D-1468-08 TCGA-CS-5390-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b0e64f0e-5a56-4e98-a5db-4d44bee595a9 43746417-c404-4b14-8a55-463e79f3a745 CAGCGCTGACGCAGATCCGTG 0.582 38 58 ERCC6L2 375748 broad.mit.edu;ucsc.edu 37 9 98774903 98774903 + Missense_Mutation SNP G G C TCGA-CS-5390-01A-02D-1468-08 TCGA-CS-5390-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b0e64f0e-5a56-4e98-a5db-4d44bee595a9 43746417-c404-4b14-8a55-463e79f3a745 CAGAAACTAAGAAATCACCTG 0.368 40 50 SERBP1 26135 broad.mit.edu;hgsc.bcm.edu 37 1 67895672 67895675 + Splice_Site DEL TTCT TTCT - TCGA-CS-5390-01A-02D-1468-08 TCGA-CS-5390-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b0e64f0e-5a56-4e98-a5db-4d44bee595a9 43746417-c404-4b14-8a55-463e79f3a745 CTGCTTTACCTTCTTTCTTAAGCG 0.632 36 106 APPL1 26060 broad.mit.edu;hgsc.bcm.edu 37 3 57302495 57302498 + Frame_Shift_Del DEL AAAC AAAC - TCGA-CS-5390-01A-02D-1468-08 TCGA-CS-5390-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b0e64f0e-5a56-4e98-a5db-4d44bee595a9 43746417-c404-4b14-8a55-463e79f3a745 agaactcaataaacaaaaacagat 0.314 18 42 NOTCH1 4851 broad.mit.edu;hgsc.bcm.edu 37 9 139413129 139413131 + In_Frame_Del DEL TCA TCA - TCGA-CS-5390-01A-02D-1468-08 TCGA-CS-5390-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx b0e64f0e-5a56-4e98-a5db-4d44bee595a9 43746417-c404-4b14-8a55-463e79f3a745 GCTGGCACAGTCATCAATGTTCT 0.631 13 27