Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count MTA2 9219 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 62363998 62363998 + Missense_Mutation SNP A A G TCGA-CS-5396-01A-02D-1468-08 TCGA-CS-5396-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 653af577-5555-4b77-bfec-3bd341cf58b5 bd28a937-72d5-4ee5-a2c4-c90271d33b1a AGTGACTTCCAGGGTAGCTAA 0.542 20 63 KRAS 3845 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 25398306 25398306 + Missense_Mutation SNP T T C rs121918682 TCGA-CS-5396-01A-02D-1468-08 TCGA-CS-5396-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 653af577-5555-4b77-bfec-3bd341cf58b5 bd28a937-72d5-4ee5-a2c4-c90271d33b1a ACCACAAGTTTATATTCAGTC 0.358 20 31 PDE1B 5153 hgsc.bcm.edu;broad.mit.edu 37 12 54968886 54968886 + Missense_Mutation SNP G G A TCGA-CS-5396-01A-02D-1468-08 TCGA-CS-5396-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 653af577-5555-4b77-bfec-3bd341cf58b5 bd28a937-72d5-4ee5-a2c4-c90271d33b1a AACCAGGATTGACAAGCCCAA 0.537 11 104 EEA1 8411 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 93244954 93244954 + Missense_Mutation SNP C C T TCGA-CS-5396-01A-02D-1468-08 TCGA-CS-5396-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 653af577-5555-4b77-bfec-3bd341cf58b5 bd28a937-72d5-4ee5-a2c4-c90271d33b1a TTCTCGCTCACGTTCCAAGGT 0.383 35 41 FRY 10129 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 32747575 32747575 + Silent SNP A A C TCGA-CS-5396-01A-02D-1468-08 TCGA-CS-5396-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 653af577-5555-4b77-bfec-3bd341cf58b5 bd28a937-72d5-4ee5-a2c4-c90271d33b1a TCCACGCTGTAGAAGGTTTTG 0.468 20 102 EFNB2 1948 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 107147326 107147326 + Silent SNP T T A TCGA-CS-5396-01A-02D-1468-08 TCGA-CS-5396-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 653af577-5555-4b77-bfec-3bd341cf58b5 bd28a937-72d5-4ee5-a2c4-c90271d33b1a TCCTGGTTGATCCAGCAGAAC 0.383 90 111 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7577120 7577120 + Missense_Mutation SNP C C T rs28934576 by1000genomes TCGA-CS-5396-01A-02D-1468-08 TCGA-CS-5396-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 653af577-5555-4b77-bfec-3bd341cf58b5 bd28a937-72d5-4ee5-a2c4-c90271d33b1a GGCACAAACACGCACCTCAAA 0.542 13 34 MTOR 2475 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 11184570 11184570 + Missense_Mutation SNP A A G TCGA-CS-5396-01A-02D-1468-08 TCGA-CS-5396-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 653af577-5555-4b77-bfec-3bd341cf58b5 bd28a937-72d5-4ee5-a2c4-c90271d33b1a GTTTTTCCGAAGAGATGTTGG 0.443 32 7 VHLL 391104 hgsc.bcm.edu;broad.mit.edu 37 1 156268966 156268966 + Silent SNP C C T TCGA-CS-5396-01A-02D-1468-08 TCGA-CS-5396-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 653af577-5555-4b77-bfec-3bd341cf58b5 bd28a937-72d5-4ee5-a2c4-c90271d33b1a CCCCGTTCCCCGCTCTCCAGG 0.597 10 141 TIAM1 7074 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 21 32617956 32617956 + Missense_Mutation SNP C C G TCGA-CS-5396-01A-02D-1468-08 TCGA-CS-5396-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 653af577-5555-4b77-bfec-3bd341cf58b5 bd28a937-72d5-4ee5-a2c4-c90271d33b1a CCGTCGCTCTCGTAGAAAAAT 0.527 10 49 NEB 4703 hgsc.bcm.edu;broad.mit.edu 37 2 152409920 152409920 + Missense_Mutation SNP G G A TCGA-CS-5396-01A-02D-1468-08 TCGA-CS-5396-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 653af577-5555-4b77-bfec-3bd341cf58b5 bd28a937-72d5-4ee5-a2c4-c90271d33b1a ACATCATCACGTAGATCATAA 0.408 45 39 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-CS-5396-01A-02D-1468-08 TCGA-CS-5396-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 653af577-5555-4b77-bfec-3bd341cf58b5 bd28a937-72d5-4ee5-a2c4-c90271d33b1a ATAAGCATGACGACCTATGAT 0.393 38 47 SLC6A6 6533 hgsc.bcm.edu;broad.mit.edu 37 3 14520692 14520692 + Splice_Site SNP T T C TCGA-CS-5396-01A-02D-1468-08 TCGA-CS-5396-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 653af577-5555-4b77-bfec-3bd341cf58b5 bd28a937-72d5-4ee5-a2c4-c90271d33b1a GTTCTCTGTGTTGTGAGTTCC 0.517 37 70 GADL1 339896 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 30885753 30885753 + Silent SNP A A G TCGA-CS-5396-01A-02D-1468-08 TCGA-CS-5396-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 653af577-5555-4b77-bfec-3bd341cf58b5 bd28a937-72d5-4ee5-a2c4-c90271d33b1a GTATCATTTTACCTCTAAGGG 0.433 80 106 HERC3 8916 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 89583639 89583639 + Missense_Mutation SNP A A G TCGA-CS-5396-01A-02D-1468-08 TCGA-CS-5396-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 653af577-5555-4b77-bfec-3bd341cf58b5 bd28a937-72d5-4ee5-a2c4-c90271d33b1a TACCAGTTTAATAAATGATGA 0.333 45 68 ADH1A 124 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 100205754 100205754 + Silent SNP G G A TCGA-CS-5396-01A-02D-1468-08 TCGA-CS-5396-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 653af577-5555-4b77-bfec-3bd341cf58b5 bd28a937-72d5-4ee5-a2c4-c90271d33b1a CATCCTGCAGGGTCCCCTGAG 0.517 21 38 SLC26A8 116369 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 35922951 35922951 + Missense_Mutation SNP C C T TCGA-CS-5396-01A-02D-1468-08 TCGA-CS-5396-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 653af577-5555-4b77-bfec-3bd341cf58b5 bd28a937-72d5-4ee5-a2c4-c90271d33b1a GACTAACCCCCGTGAATCCAC 0.527 59 92 DNPH1 10591 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 43193850 43193850 + Silent SNP C C T TCGA-CS-5396-01A-02D-1468-08 TCGA-CS-5396-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 653af577-5555-4b77-bfec-3bd341cf58b5 bd28a937-72d5-4ee5-a2c4-c90271d33b1a AGCCTACACCCAAGGATGGCT 0.607 12 34 EPHA7 2045 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 93964475 93964475 + Missense_Mutation SNP T T C TCGA-CS-5396-01A-02D-1468-08 TCGA-CS-5396-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 653af577-5555-4b77-bfec-3bd341cf58b5 bd28a937-72d5-4ee5-a2c4-c90271d33b1a CGGTACTGGATGGCTTCGGGT 0.373 40 44 MAP3K5 4217 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 136935398 136935398 + Missense_Mutation SNP A A G TCGA-CS-5396-01A-02D-1468-08 TCGA-CS-5396-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 653af577-5555-4b77-bfec-3bd341cf58b5 bd28a937-72d5-4ee5-a2c4-c90271d33b1a ATGCAATGCTATTTCTTCATG 0.363 65 100 CYCS 54205 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 25163609 25163609 + Missense_Mutation SNP C C A rs11548807 TCGA-CS-5396-01A-02D-1468-08 TCGA-CS-5396-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 653af577-5555-4b77-bfec-3bd341cf58b5 bd28a937-72d5-4ee5-a2c4-c90271d33b1a TATCCAGGGGCCTGACCTGTC 0.443 21 68 GPR124 25960 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 37698790 37698790 + Missense_Mutation SNP G G T TCGA-CS-5396-01A-02D-1468-08 TCGA-CS-5396-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 653af577-5555-4b77-bfec-3bd341cf58b5 bd28a937-72d5-4ee5-a2c4-c90271d33b1a GTTCCACCAGGCTCAGGGGCA 0.706 6 6 SPATA31E1 286234 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 90502800 90502800 + Missense_Mutation SNP G G A TCGA-CS-5396-01A-02D-1468-08 TCGA-CS-5396-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 653af577-5555-4b77-bfec-3bd341cf58b5 bd28a937-72d5-4ee5-a2c4-c90271d33b1a CTTCCAGGCCGCCACATGGAC 0.642 29 47 PHEX 5251 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 22095667 22095667 + Silent SNP T T A TCGA-CS-5396-01A-02D-1468-08 TCGA-CS-5396-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 653af577-5555-4b77-bfec-3bd341cf58b5 bd28a937-72d5-4ee5-a2c4-c90271d33b1a GGCCCGTGCTTGAATCTAATA 0.473 140 259 COL4A6 1288 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 107406179 107406179 + Missense_Mutation SNP C C T TCGA-CS-5396-01A-02D-1468-08 TCGA-CS-5396-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 653af577-5555-4b77-bfec-3bd341cf58b5 bd28a937-72d5-4ee5-a2c4-c90271d33b1a GGGATGCCATCGATCCCTGGT 0.592 116 174 TENM1 10178 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 123680892 123680892 + Missense_Mutation SNP C C T TCGA-CS-5396-01A-02D-1468-08 TCGA-CS-5396-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 653af577-5555-4b77-bfec-3bd341cf58b5 bd28a937-72d5-4ee5-a2c4-c90271d33b1a ACTTATATAACAGTTGCTTTG 0.393 38 78 PLXNA3 55558 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 153695648 153695648 + Missense_Mutation SNP G G T TCGA-CS-5396-01A-02D-1468-08 TCGA-CS-5396-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 653af577-5555-4b77-bfec-3bd341cf58b5 bd28a937-72d5-4ee5-a2c4-c90271d33b1a CCCCAGCCTCGGGCGCAAGGC 0.617 32 114 THOP1 7064 broad.mit.edu;ucsc.edu 37 19 2810741 2810741 + Missense_Mutation SNP G G T TCGA-CS-5396-01A-02D-1468-08 TCGA-CS-5396-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 653af577-5555-4b77-bfec-3bd341cf58b5 bd28a937-72d5-4ee5-a2c4-c90271d33b1a TCTGCCAGGAGATCCTCGGGG 0.662 3 7 LPAL2 80350 broad.mit.edu;ucsc.edu 37 6 160906846 160906846 + RNA SNP C C T rs138121216 by1000genomes TCGA-CS-5396-01A-02D-1468-08 TCGA-CS-5396-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 653af577-5555-4b77-bfec-3bd341cf58b5 bd28a937-72d5-4ee5-a2c4-c90271d33b1a CAAAGACGTACGCATTTGGGT 0.463 98 189 KAT6B 23522 broad.mit.edu;hgsc.bcm.edu 37 10 76788415 76788415 + Frame_Shift_Del DEL A A - TCGA-CS-5396-01A-02D-1468-08 TCGA-CS-5396-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 653af577-5555-4b77-bfec-3bd341cf58b5 bd28a937-72d5-4ee5-a2c4-c90271d33b1a ACCCCGCCAGAAACACCCATG 0.493 31 70