Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count FOLH1 2346 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 49207240 49207240 + Silent SNP T T C TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d GGTAACCTGGTGTGAGAGGGT 0.428 14 33 OR5D14 219436 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 55563532 55563532 + Silent SNP G G T TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d ATGCTCTCCGGTTAAACTTCT 0.502 37 191 APOA1 335 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 116707048 116707048 + Missense_Mutation SNP C C T TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d TCCCAGAACTCCTGGGTCACA 0.592 23 88 IRAK3 11213 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 66638280 66638280 + Missense_Mutation SNP T T C TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d AACATCCTTTTGGATGATCAG 0.393 18 55 KERA 11081 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 91449807 91449807 + Silent SNP T T C TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d CAGGAATGGTTTCTATCAGGT 0.348 13 80 TMCC3 57458 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 94975589 94975589 + Silent SNP G G A TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d ACTGGTTTCCGTTACTGTCGG 0.592 24 107 ATP8A2 51761 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 26411309 26411309 + Silent SNP C C A TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d AGATTTTCACCGCTTTGCCGC 0.498 61 121 MYO16 23026 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 109318372 109318372 + Missense_Mutation SNP G G A TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d TACTATGAGCGCGAGAAGGCT 0.527 14 45 CASC5 57082 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 40914116 40914116 + Missense_Mutation SNP T T C TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d GCAGAGCCTGTCAAATCCTTT 0.358 10 50 TUBGCP4 27229 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 43695930 43695930 + Missense_Mutation SNP C C T rs149549954 by1000genomes TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d AGTTTTTGTTCGCTGGTCAGT 0.527 23 21 AP4E1 23431 hgsc.bcm.edu;broad.mit.edu 37 15 51260560 51260560 + Missense_Mutation SNP T T G TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d GAGGAAAAGCTTTCTCAGGAA 0.373 6 15 ACSM1 116285 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 20635526 20635526 + Silent SNP G G A TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d GGACAATAAAGGCCTTCACCA 0.473 22 79 DNAH2 146754 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7643864 7643864 + Silent SNP C C T TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d TTGCCTCCCGCGAGGTGCGGC 0.672 20 129 DNAJC7 7266 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 40140910 40140910 + Missense_Mutation SNP G G A TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d GAGTGCTTTGGCATTCTACAG 0.423 51 96 CSHL1 1444 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 61987091 61987091 + Missense_Mutation SNP C C T TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d CAGCTGCCCTCCACAGAGCGG 0.632 42 73 LGALS3BP 3959 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 76967757 76967757 + Silent SNP C C T TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d AGGTGCTCTTCGAGCTGTTGG 0.612 25 55 LAMA3 3909 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 21489195 21489195 + Missense_Mutation SNP A A G TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d CCCTTGGGAAACATCTCTGAC 0.453 13 73 TRAPPC8 22878 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 29433858 29433858 + Missense_Mutation SNP G G C TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d TCCAGTGTTTGCTACTACTTG 0.328 10 42 S1PR2 9294 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 10334891 10334891 + Silent SNP G G A TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d GTCTTGAGCAGGGCTAGCGTC 0.617 15 36 ZNF585B 92285 hgsc.bcm.edu;broad.mit.edu 37 19 37676803 37676803 + Missense_Mutation SNP C C T TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d TGTCTCTCTCCAGTGTGAATT 0.383 18 109 FCGBP 8857 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 40368357 40368357 + Missense_Mutation SNP C C T TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d GCCTGGCAGGCGGCCACGTAG 0.647 32 293 AJAP1 55966 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 4832380 4832380 + Missense_Mutation SNP C C T TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d CAGCCACCAGCGGAAGACCAA 0.607 11 69 CLSTN1 22883 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 9794036 9794036 + Missense_Mutation SNP A A C TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d TTACCTGTGAAGGTCATGCCC 0.612 19 97 SPRR2G 6706 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 153122438 153122438 + Missense_Mutation SNP G G A TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d ATCCTGGCATGGTGGAGGTGG 0.567 23 120 CD244 51744 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 160811431 160811431 + Nonsense_Mutation SNP C C A TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d CTGGTGACCTCCAGGCAGTAG 0.453 26 102 RXRG 6258 hgsc.bcm.edu;broad.mit.edu 37 1 165398112 165398112 + Missense_Mutation SNP A A C TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d TCACTGGGGTATCTGTGTAGC 0.607 5 66 SELE 6401 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 169697059 169697059 + Missense_Mutation SNP C C T TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d GACAGCATCGCATCTCACAGC 0.498 34 137 EDEM3 80267 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 184695449 184695449 + Silent SNP T T C TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d TCAAGGTACCTGCACAAGCTG 0.388 15 61 GPR137B 7107 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 236341829 236341829 + Nonsense_Mutation SNP C C T TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d CGTCTCTGTGCGAGTGGCCAT 0.478 58 180 RYR2 6262 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 237804239 237804239 + Missense_Mutation SNP C C G TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d ACATGGGGAACGCGATCATGA 0.443 8 50 BCL11A 53335 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 60679728 60679728 + Missense_Mutation SNP C C T TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d TAAGGGCTCTCGAGCTTCCAT 0.557 38 119 RND3 390 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 151326607 151326607 + Missense_Mutation SNP G G A TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d GGCTCTCTGTGATTTGTTCCG 0.458 34 125 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d ATAAGCATGACGACCTATGAT 0.393 18 74 BSN 8927 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 49691512 49691512 + Missense_Mutation SNP C C T TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d TCTACACAGACGCCAAGTCCA 0.622 11 72 BSN 8927 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 49694614 49694614 + Missense_Mutation SNP C C T TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d TCACTGCAAACGGAGGAGCAG 0.632 14 41 CACNA2D3 55799 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 54596855 54596855 + Missense_Mutation SNP G G T TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d GGGTTTATTGGTCTGAATCTC 0.403 10 40 SEL1L3 23231 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 25849135 25849135 + Missense_Mutation SNP T T C TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d GCGCGTACTATCACTGCAGAT 0.408 9 73 SHROOM3 57619 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 77661578 77661578 + Missense_Mutation SNP C C T TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d CCCTCGCACCCGCACACATCC 0.692 5 33 FRAS1 80144 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 79400621 79400621 + Missense_Mutation SNP T T G TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d GGCTCTGATTTTAAATCTAGA 0.463 15 41 USP53 54532 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 120214081 120214081 + Missense_Mutation SNP T T A TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d ATATGAATGATGAAAGACATA 0.393 9 50 PRDM5 11107 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 121698363 121698363 + Missense_Mutation SNP A A C TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d CCGGATATGAACTCTGAGTGT 0.383 35 155 GMDS 2762 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 1726688 1726688 + Missense_Mutation SNP C C T TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d TCCACAGTCACGTGAACTTTG 0.507 37 194 GPR116 221395 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 46826760 46826760 + Silent SNP C C T TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d TGTTGGCAAGCCTGAAGTTCC 0.478 16 114 NT5E 4907 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 86203685 86203685 + Missense_Mutation SNP T T C TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d TTAATATTTCTTTCACTTTGG 0.353 14 103 RNGTT 8732 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 89563379 89563379 + Missense_Mutation SNP C C T TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d TAAATGCATACGAAGATCTTT 0.289 13 108 TMEM200A 114801 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 130761742 130761742 + Missense_Mutation SNP T T C TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d CCGGCTTTATTCCCCATCTGG 0.478 61 93 FOXP2 93986 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 114282537 114282537 + Missense_Mutation SNP G G A TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d GAAGACAATGGCATTAAACAT 0.428 35 61 WNT2 7472 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 116960776 116960776 + Missense_Mutation SNP C C T TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d ACACAGCTGCCGCTGGCTGCT 0.597 10 37 AKR1B10 57016 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 134212705 134212705 + Silent SNP C C T TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d CCAAGATGCCCATTGTGGGCC 0.502 19 97 POLR3D 661 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 22107627 22107627 + Missense_Mutation SNP C C A TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d CCTGGCTGACCTGACAGAGGG 0.542 36 59 DOCK5 80005 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 25154057 25154057 + Missense_Mutation SNP G G C TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d GGTGGTGCGAGATGACAATGG 0.512 4 20 NRG1 3084 hgsc.bcm.edu;ucsc.edu 37 8 32600199 32600199 + Missense_Mutation SNP A A T TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d TCAGGTGCCCAAATGAGTTTA 0.423 39 205 ANK1 286 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 41543690 41543690 + Missense_Mutation SNP C C T rs138642972 byFrequency TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d TTGGCCTTCACGGATGACCCA 0.522 29 81 CLVS1 157807 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 62371030 62371030 + Silent SNP C C T TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d CTCACACATCCTATAATGCAA 0.502 24 55 COL5A1 1289 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 137591840 137591840 + Silent SNP C C T TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d CCATCTACAACGAGCAGGGTA 0.587 29 131 GYG2 8908 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 2799186 2799186 + Missense_Mutation SNP C C T TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d GGAGGAAGGCCGTATCGACTA 0.572 7 32 PRPS2 5634 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 12838861 12838861 + Missense_Mutation SNP C C T TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d GCCTTTGAGGCTGTTGTCGTC 0.483 19 76 RS1 6247 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 18660177 18660177 + Missense_Mutation SNP C C T TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d GCAATGCGGACGTGCCAGCCC 0.657 28 70 POLA1 5422 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 24830876 24830876 + Silent SNP G G A TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d ACGCTGCTCTGGTTGTTGAGC 0.393 24 50 FAM47B 170062 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 34962025 34962025 + Silent SNP C C T TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d AGCTGGAAGACGCACGGGCTC 0.537 21 60 FAM120C 54954 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 54209051 54209051 + Missense_Mutation SNP G G A TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d GATCAGTTGCGCTGTCTGCCG 0.721 7 17 USP51 158880 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 55514135 55514135 + Missense_Mutation SNP G G A TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d ATGAAAAAGCGAAGACATTTC 0.438 15 48 KIAA2022 340533 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 73963361 73963361 + Missense_Mutation SNP G G T TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d CTTGGGGCAGGTAGTAAAGAC 0.463 17 72 AMMECR1 9949 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 109459855 109459855 + Missense_Mutation SNP A A G TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d GCTATCTTTAAGGGCACTGTT 0.378 21 101 CFP 5199 broad.mit.edu;ucsc.edu 37 X 47487019 47487019 + Missense_Mutation SNP C C A TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d CCAGGGCCCCCAGCCAGACCA 0.632 7 17 OBSCN 84033 broad.mit.edu;ucsc.edu 37 1 228404888 228404888 + Missense_Mutation SNP C C T TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d GATGTGGGGACGCGGCACCGG 0.652 15 113 ZDBF2 57683 broad.mit.edu;ucsc.edu 37 2 207169761 207169761 + Missense_Mutation SNP C C T TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d ATTGGTCAGGCTACAAATAAT 0.423 9 37 SP100 6672 broad.mit.edu;ucsc.edu 37 2 231367785 231367785 + Silent SNP A A G TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d TCTCAGGAAGAAAAGCCAACA 0.289 18 92 SERPINB11 89778 broad.mit.edu;ucsc.edu 37 18 61387343 61387343 + RNA SNP A A T TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d TGGCAAAATAAATTTCAAGTA 0.348 8 33 RP4-604K5.1 0 broad.mit.edu;ucsc.edu 37 1 87369113 87369113 + Nonsense_Mutation SNP C C A TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d GATGAAAACTCTGCCCCAAAA 0.418 12 20 OR9G1 390174 broad.mit.edu;ucsc.edu 37 11 56468417 56468417 + Missense_Mutation SNP A A G TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d CCCTTGGTGGAGCTGGCCTGT 0.463 29 130 ADAMTS18 170692 broad.mit.edu;ucsc.edu 37 16 77401350 77401350 + Nonsense_Mutation SNP G G A TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d TTCTTGCGTCGTCCACAAAAA 0.443 20 78 PCSK2 5126 broad.mit.edu;ucsc.edu 37 20 17446133 17446133 + Missense_Mutation SNP G G T TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d TGGTGAAAATGGCTAAAGACT 0.567 6 48 CISH 1154 broad.mit.edu;ucsc.edu 37 3 50645154 50645154 + Missense_Mutation SNP G G A TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d TGCAGGCTGCGGGCACTGCTT 0.622 23 104 HTR1E 3354 broad.mit.edu;ucsc.edu 37 6 87725427 87725427 + Silent SNP C C A TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d GGGCCATCACCAATGCTATTG 0.562 18 129 TNXB 7148 broad.mit.edu;ucsc.edu 37 6 32049264 32049264 + Missense_Mutation SNP G G A TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d CTCATCCCCCGCAACAGGCAC 0.617 4 19 TP53 7157 broad.mit.edu;hgsc.bcm.edu 37 17 7577105 7577105 + Frame_Shift_Del DEL G G - TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d GTCTCTCCCAGGACAGGCACA 0.552 38 13 EMILIN2 84034 broad.mit.edu;hgsc.bcm.edu 37 18 2891806 2891806 + Frame_Shift_Del DEL C C - TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d CCAGGGAAAGCCTCATGGGAT 0.502 23 62 CYTH4 27128 broad.mit.edu;hgsc.bcm.edu 37 22 37705324 37705326 + In_Frame_Del DEL CTT CTT - TCGA-CS-6665-01A-11D-1893-08 TCGA-CS-6665-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 682d5b5e-3569-403c-b31c-887bd0aa26a5 c4574016-bc61-4fb5-92c6-efccec8cdc5d TCACTCACACCTTCTTCAATCCA 0.567 45 80