Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count PLCE1 51196 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 96084175 96084175 + Missense_Mutation SNP G G A TCGA-CS-6668-01A-11D-1893-08 TCGA-CS-6668-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d414e076-dcb6-4edf-adef-0abdc57354ea 7154a36b-c503-43f5-b291-89bd5ce2875f TGTGCTTTTGGAAGAGGTGGT 0.448 130 159 NT5DC3 51559 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 104179169 104179169 + Missense_Mutation SNP A A G TCGA-CS-6668-01A-11D-1893-08 TCGA-CS-6668-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d414e076-dcb6-4edf-adef-0abdc57354ea 7154a36b-c503-43f5-b291-89bd5ce2875f GTTTGAATGTATTGCTCCGTG 0.428 47 56 TCP11L2 255394 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 106729466 106729466 + Missense_Mutation SNP A A C TCGA-CS-6668-01A-11D-1893-08 TCGA-CS-6668-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d414e076-dcb6-4edf-adef-0abdc57354ea 7154a36b-c503-43f5-b291-89bd5ce2875f TAAATGAAGAATTATTTTCTC 0.398 33 40 POLG 5428 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 89864982 89864982 + Silent SNP G G A TCGA-CS-6668-01A-11D-1893-08 TCGA-CS-6668-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d414e076-dcb6-4edf-adef-0abdc57354ea 7154a36b-c503-43f5-b291-89bd5ce2875f CATTGCTGGCGGTGAGCCATG 0.602 50 71 MARVELD3 91862 hgsc.bcm.edu;ucsc.edu 37 16 71668568 71668568 + Silent SNP C C T TCGA-CS-6668-01A-11D-1893-08 TCGA-CS-6668-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d414e076-dcb6-4edf-adef-0abdc57354ea 7154a36b-c503-43f5-b291-89bd5ce2875f GCTGCAGTTTCCACGGAGCAG 0.542 42 49 KRT34 3885 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 39538275 39538275 + Missense_Mutation SNP C C T TCGA-CS-6668-01A-11D-1893-08 TCGA-CS-6668-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d414e076-dcb6-4edf-adef-0abdc57354ea 7154a36b-c503-43f5-b291-89bd5ce2875f CTCCAGCTGACGCACCTTCTC 0.597 80 136 DSG2 1829 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 29102122 29102122 + Silent SNP C C T TCGA-CS-6668-01A-11D-1893-08 TCGA-CS-6668-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d414e076-dcb6-4edf-adef-0abdc57354ea 7154a36b-c503-43f5-b291-89bd5ce2875f CCTATAGAATCGTATCTCTGG 0.378 17 42 KCNG2 26251 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 77624219 77624219 + Silent SNP G G A TCGA-CS-6668-01A-11D-1893-08 TCGA-CS-6668-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d414e076-dcb6-4edf-adef-0abdc57354ea 7154a36b-c503-43f5-b291-89bd5ce2875f GCGTGTCCGTGTCCTTCGTGG 0.766 16 44 PRAMEF1 65121 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 12853498 12853498 + Missense_Mutation SNP T T G rs149824309 TCGA-CS-6668-01A-11D-1893-08 TCGA-CS-6668-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d414e076-dcb6-4edf-adef-0abdc57354ea 7154a36b-c503-43f5-b291-89bd5ce2875f CCACTCTTCATGGAGGCCTTC 0.587 103 37 PKP1 5317 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 201282317 201282317 + Silent SNP G G A TCGA-CS-6668-01A-11D-1893-08 TCGA-CS-6668-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d414e076-dcb6-4edf-adef-0abdc57354ea 7154a36b-c503-43f5-b291-89bd5ce2875f CCCTCAAGCGGGAGCCTGACA 0.592 6 5 ARFGEF2 10564 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 47626800 47626800 + Missense_Mutation SNP T T C TCGA-CS-6668-01A-11D-1893-08 TCGA-CS-6668-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d414e076-dcb6-4edf-adef-0abdc57354ea 7154a36b-c503-43f5-b291-89bd5ce2875f GGCGATCCGCTGCATTGCCCA 0.537 27 93 RNF103 7844 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 86831209 86831209 + Silent SNP T T C TCGA-CS-6668-01A-11D-1893-08 TCGA-CS-6668-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d414e076-dcb6-4edf-adef-0abdc57354ea 7154a36b-c503-43f5-b291-89bd5ce2875f ACCAATCAGGTTCCATATCTT 0.413 99 176 LRP1B 53353 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 142567938 142567938 + Missense_Mutation SNP A A G TCGA-CS-6668-01A-11D-1893-08 TCGA-CS-6668-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d414e076-dcb6-4edf-adef-0abdc57354ea 7154a36b-c503-43f5-b291-89bd5ce2875f TGATCGTGGCAAAGAAATTCA 0.443 22 17 IDH1 3417 hgsc.bcm.edu;broad.mit.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-CS-6668-01A-11D-1893-08 TCGA-CS-6668-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d414e076-dcb6-4edf-adef-0abdc57354ea 7154a36b-c503-43f5-b291-89bd5ce2875f ATAAGCATGACGACCTATGAT 0.393 32 39 FBXO36 130888 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 230861511 230861511 + Missense_Mutation SNP A A G TCGA-CS-6668-01A-11D-1893-08 TCGA-CS-6668-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d414e076-dcb6-4edf-adef-0abdc57354ea 7154a36b-c503-43f5-b291-89bd5ce2875f AGACTATGTCATCAATTTGTG 0.348 53 74 CLIP2 7461 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 73731911 73731911 + Missense_Mutation SNP G G A rs151111065 byFrequency TCGA-CS-6668-01A-11D-1893-08 TCGA-CS-6668-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d414e076-dcb6-4edf-adef-0abdc57354ea 7154a36b-c503-43f5-b291-89bd5ce2875f CCCCCCGGCCGTGGGGGGAAG 0.662 36 108 DLX5 1749 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 96650149 96650149 + Missense_Mutation SNP C C T TCGA-CS-6668-01A-11D-1893-08 TCGA-CS-6668-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d414e076-dcb6-4edf-adef-0abdc57354ea 7154a36b-c503-43f5-b291-89bd5ce2875f TACCAGGATGCAGAGTTCTCC 0.652 37 36 KIAA0368 23392 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 114170943 114170943 + Nonsense_Mutation SNP G G A TCGA-CS-6668-01A-11D-1893-08 TCGA-CS-6668-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d414e076-dcb6-4edf-adef-0abdc57354ea 7154a36b-c503-43f5-b291-89bd5ce2875f TGGATTGCTCGTTCTTTCATC 0.398 12 5 PCDHGA7 56108 broad.mit.edu;ucsc.edu 37 5 140764645 140764645 + Missense_Mutation SNP G G A TCGA-CS-6668-01A-11D-1893-08 TCGA-CS-6668-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d414e076-dcb6-4edf-adef-0abdc57354ea 7154a36b-c503-43f5-b291-89bd5ce2875f CCTGCTGCAGGCTTCAGAAGG 0.637 49 42 VSIG4 11326 broad.mit.edu;ucsc.edu 37 X 65247365 65247365 + Missense_Mutation SNP G G A TCGA-CS-6668-01A-11D-1893-08 TCGA-CS-6668-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d414e076-dcb6-4edf-adef-0abdc57354ea 7154a36b-c503-43f5-b291-89bd5ce2875f CACTGTAGATGTTGCTATGAA 0.468 8 16 LTBP3 4054 broad.mit.edu;ucsc.edu 37 11 65321228 65321228 + Missense_Mutation SNP G G A TCGA-CS-6668-01A-11D-1893-08 TCGA-CS-6668-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d414e076-dcb6-4edf-adef-0abdc57354ea 7154a36b-c503-43f5-b291-89bd5ce2875f TGGGTGGGCGGCCGGGGGTGC 0.677 3 15 TCF12 6938 broad.mit.edu;hgsc.bcm.edu 37 15 57523456 57523457 + Splice_Site INS - - T TCGA-CS-6668-01A-11D-1893-08 TCGA-CS-6668-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d414e076-dcb6-4edf-adef-0abdc57354ea 7154a36b-c503-43f5-b291-89bd5ce2875f TTTATGCAAGGTAAGTACTACC 0.386 43 60 CIC 23152 broad.mit.edu;hgsc.bcm.edu 37 19 42795074 42795075 + Frame_Shift_Ins INS - - G TCGA-CS-6668-01A-11D-1893-08 TCGA-CS-6668-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d414e076-dcb6-4edf-adef-0abdc57354ea 7154a36b-c503-43f5-b291-89bd5ce2875f CTCGGGTGCCTGGGGGCTCCCC 0.644 12 7 NOTCH1 4851 ucsc.edu 37 9 139413126 139413126 + Missense_Mutation SNP C C G TCGA-CS-6668-01A-11D-1893-08 TCGA-CS-6668-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx d414e076-dcb6-4edf-adef-0abdc57354ea 7154a36b-c503-43f5-b291-89bd5ce2875f GGCGCTGGCACAGTCATCAAT 0.637 3 77