Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
RBP3	5949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	48390167	48390167	+	Silent	SNP	G	G	A			TCGA-DB-5276-01A-01D-1468-08	TCGA-DB-5276-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fc6b7655-9307-4c8b-b1f6-f29a4dabd72c	289ad150-2e4f-4d98-9ebc-af05a0b95e7f	CCTCGGCCACGCCCCTGGTCT	0.657	25	64
OR51V1	283111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	5221701	5221701	+	Missense_Mutation	SNP	A	A	G			TCGA-DB-5276-01A-01D-1468-08	TCGA-DB-5276-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fc6b7655-9307-4c8b-b1f6-f29a4dabd72c	289ad150-2e4f-4d98-9ebc-af05a0b95e7f	CAGGTCAGTGAGGGCCAGCAT	0.537	6	76
PRDM11	56981	hgsc.bcm.edu;broad.mit.edu	37	11	45245878	45245878	+	Missense_Mutation	SNP	C	C	T			TCGA-DB-5276-01A-01D-1468-08	TCGA-DB-5276-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fc6b7655-9307-4c8b-b1f6-f29a4dabd72c	289ad150-2e4f-4d98-9ebc-af05a0b95e7f	TCCCTACAAGCGTGGCTTTGA	0.507	18	291
AURKC	6795	hgsc.bcm.edu;broad.mit.edu	37	19	57744018	57744018	+	Silent	SNP	C	C	T	rs141028635		TCGA-DB-5276-01A-01D-1468-08	TCGA-DB-5276-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fc6b7655-9307-4c8b-b1f6-f29a4dabd72c	289ad150-2e4f-4d98-9ebc-af05a0b95e7f	TGCAGAAAAGCGAGAAATTAG	0.537	7	89
WDR3	10885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	118483783	118483783	+	Missense_Mutation	SNP	C	C	T	rs150881258		TCGA-DB-5276-01A-01D-1468-08	TCGA-DB-5276-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fc6b7655-9307-4c8b-b1f6-f29a4dabd72c	289ad150-2e4f-4d98-9ebc-af05a0b95e7f	TTCCATAATGCGGGAAGGAAG	0.423	21	102
ALMS1	7840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	73800143	73800143	+	Missense_Mutation	SNP	G	G	C			TCGA-DB-5276-01A-01D-1468-08	TCGA-DB-5276-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fc6b7655-9307-4c8b-b1f6-f29a4dabd72c	289ad150-2e4f-4d98-9ebc-af05a0b95e7f	AAATTGAACAGATTAAATTTG	0.373	16	83
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	168110545	168110545	+	Missense_Mutation	SNP	C	C	G			TCGA-DB-5276-01A-01D-1468-08	TCGA-DB-5276-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fc6b7655-9307-4c8b-b1f6-f29a4dabd72c	289ad150-2e4f-4d98-9ebc-af05a0b95e7f	TTTTTAGAAGCTGCTGCTCCA	0.343	17	98
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113113	209113113	+	Missense_Mutation	SNP	G	G	A	rs121913499		TCGA-DB-5276-01A-01D-1468-08	TCGA-DB-5276-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fc6b7655-9307-4c8b-b1f6-f29a4dabd72c	289ad150-2e4f-4d98-9ebc-af05a0b95e7f	TAAGCATGACGACCTATGATG	0.398	17	68
CCDC158	339965	hgsc.bcm.edu;broad.mit.edu	37	4	77250102	77250102	+	Silent	SNP	G	G	A	rs138548683	by1000genomes	TCGA-DB-5276-01A-01D-1468-08	TCGA-DB-5276-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fc6b7655-9307-4c8b-b1f6-f29a4dabd72c	289ad150-2e4f-4d98-9ebc-af05a0b95e7f	TGTCTCCTGCGTGTAATGTGA	0.433	8	79
TBX22	50945	hgsc.bcm.edu;broad.mit.edu	37	X	79279563	79279563	+	Splice_Site	SNP	C	C	T			TCGA-DB-5276-01A-01D-1468-08	TCGA-DB-5276-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fc6b7655-9307-4c8b-b1f6-f29a4dabd72c	289ad150-2e4f-4d98-9ebc-af05a0b95e7f	TTCTTACAGGCGGATGTTCCC	0.483	21	27
CPEB4	80315	broad.mit.edu;hgsc.bcm.edu	37	5	173316976	173316977	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-DB-5276-01A-01D-1468-08	TCGA-DB-5276-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fc6b7655-9307-4c8b-b1f6-f29a4dabd72c	289ad150-2e4f-4d98-9ebc-af05a0b95e7f	CAGAAAAAGCAAAAAGTCAGCA	0.49	39	163
C12orf40	0	broad.mit.edu;hgsc.bcm.edu	37	12	40114882	40114885	+	Frame_Shift_Del	DEL	ACAA	ACAA	-			TCGA-DB-5276-01A-01D-1468-08	TCGA-DB-5276-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fc6b7655-9307-4c8b-b1f6-f29a4dabd72c	289ad150-2e4f-4d98-9ebc-af05a0b95e7f	ATGCAGGGATACAAACAGAGAGTG	0.402	23	109
BAIAP3	8938	broad.mit.edu;hgsc.bcm.edu	37	16	1397309	1397310	+	Frame_Shift_Ins	INS	-	-	T			TCGA-DB-5276-01A-01D-1468-08	TCGA-DB-5276-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fc6b7655-9307-4c8b-b1f6-f29a4dabd72c	289ad150-2e4f-4d98-9ebc-af05a0b95e7f	GCCCTGGTCAGTTTTTTCCACG	0.639	12	60
ICT1	3396	broad.mit.edu;hgsc.bcm.edu	37	17	73016725	73016727	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-DB-5276-01A-01D-1468-08	TCGA-DB-5276-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fc6b7655-9307-4c8b-b1f6-f29a4dabd72c	289ad150-2e4f-4d98-9ebc-af05a0b95e7f	GAGCCAACAAAAGAAGATGTTAA	0.473	18	59
BCOR	54880	broad.mit.edu;hgsc.bcm.edu	37	X	39922031	39922032	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-DB-5276-01A-01D-1468-08	TCGA-DB-5276-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fc6b7655-9307-4c8b-b1f6-f29a4dabd72c	289ad150-2e4f-4d98-9ebc-af05a0b95e7f	TAGTATTCCCCTGTCAGTGGCA	0.579	14	26
ATRX	546	broad.mit.edu;hgsc.bcm.edu	37	X	76939181	76939184	+	Frame_Shift_Del	DEL	AGGA	AGGA	-			TCGA-DB-5276-01A-01D-1468-08	TCGA-DB-5276-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fc6b7655-9307-4c8b-b1f6-f29a4dabd72c	289ad150-2e4f-4d98-9ebc-af05a0b95e7f	TCTGGAACTGAGGAAGGAACAGAC	0.407	72	202