Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count MAPK8 5599 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 49618135 49618135 + Missense_Mutation SNP A A G TCGA-DB-A4XE-01A-11D-A27K-08 TCGA-DB-A4XE-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6998fda2-aab1-4175-8606-2df81e5e7114 d4e7fe64-d8f5-4696-8470-f6fb2635b838 GAGCTAGATCATGAAAGAATG 0.398 17 152 PNLIPRP1 5407 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 118357417 118357417 + Missense_Mutation SNP G G T TCGA-DB-A4XE-01A-11D-A27K-08 TCGA-DB-A4XE-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6998fda2-aab1-4175-8606-2df81e5e7114 d4e7fe64-d8f5-4696-8470-f6fb2635b838 TGACTTTGTTGATGTGATTCA 0.483 26 75 LRP6 4040 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 12291381 12291381 + Missense_Mutation SNP T T A TCGA-DB-A4XE-01A-11D-A27K-08 TCGA-DB-A4XE-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6998fda2-aab1-4175-8606-2df81e5e7114 d4e7fe64-d8f5-4696-8470-f6fb2635b838 TTGCTGCTGTTTATCAATCCA 0.423 75 150 TUBA3C 7278 hgsc.bcm.edu;broad.mit.edu 37 13 19752464 19752464 + Silent SNP C C T rs142499533 TCGA-DB-A4XE-01A-11D-A27K-08 TCGA-DB-A4XE-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6998fda2-aab1-4175-8606-2df81e5e7114 d4e7fe64-d8f5-4696-8470-f6fb2635b838 AATTATTGGCCGCATCTTCCT 0.522 9 119 TDP1 55775 hgsc.bcm.edu;broad.mit.edu 37 14 90455299 90455299 + Silent SNP C C T TCGA-DB-A4XE-01A-11D-A27K-08 TCGA-DB-A4XE-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6998fda2-aab1-4175-8606-2df81e5e7114 d4e7fe64-d8f5-4696-8470-f6fb2635b838 CCTGGCCTGTCGTAGGTCAGT 0.448 4 54 RPS2 6187 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 2014319 2014319 + Missense_Mutation SNP G G C TCGA-DB-A4XE-01A-11D-A27K-08 TCGA-DB-A4XE-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6998fda2-aab1-4175-8606-2df81e5e7114 d4e7fe64-d8f5-4696-8470-f6fb2635b838 CCAGGGACTTGATCTTCATGT 0.602 32 61 C16orf45 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 15661873 15661873 + Missense_Mutation SNP G G A TCGA-DB-A4XE-01A-11D-A27K-08 TCGA-DB-A4XE-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6998fda2-aab1-4175-8606-2df81e5e7114 d4e7fe64-d8f5-4696-8470-f6fb2635b838 AGGACATCATGGACTTGAAGC 0.557 15 19 SGSM2 9905 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 2282481 2282481 + Silent SNP C C A TCGA-DB-A4XE-01A-11D-A27K-08 TCGA-DB-A4XE-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6998fda2-aab1-4175-8606-2df81e5e7114 d4e7fe64-d8f5-4696-8470-f6fb2635b838 TCACTGACATCATCAAGTTTT 0.582 30 81 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7577559 7577559 + Missense_Mutation SNP G G T rs28934573 TCGA-DB-A4XE-01A-11D-A27K-08 TCGA-DB-A4XE-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6998fda2-aab1-4175-8606-2df81e5e7114 d4e7fe64-d8f5-4696-8470-f6fb2635b838 GCCCATGCAGGAACTGTTACA 0.572 34 56 BZRAP1 9256 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 56393488 56393488 + Missense_Mutation SNP T T C TCGA-DB-A4XE-01A-11D-A27K-08 TCGA-DB-A4XE-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6998fda2-aab1-4175-8606-2df81e5e7114 d4e7fe64-d8f5-4696-8470-f6fb2635b838 CTCAAAGGGGTTGTAGCTGTT 0.522 7 76 EMILIN2 84034 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 2891077 2891077 + Missense_Mutation SNP G G A TCGA-DB-A4XE-01A-11D-A27K-08 TCGA-DB-A4XE-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6998fda2-aab1-4175-8606-2df81e5e7114 d4e7fe64-d8f5-4696-8470-f6fb2635b838 CCAAGCCTATGTGGACAGTAA 0.547 96 116 TTR 7276 hgsc.bcm.edu;broad.mit.edu 37 18 29172888 29172888 + Missense_Mutation SNP G G A TCGA-DB-A4XE-01A-11D-A27K-08 TCGA-DB-A4XE-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6998fda2-aab1-4175-8606-2df81e5e7114 d4e7fe64-d8f5-4696-8470-f6fb2635b838 GTCCTCTGATGGTCAAAGTTC 0.483 7 79 HIPK1 204851 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 114510515 114510515 + Missense_Mutation SNP C C A TCGA-DB-A4XE-01A-11D-A27K-08 TCGA-DB-A4XE-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6998fda2-aab1-4175-8606-2df81e5e7114 d4e7fe64-d8f5-4696-8470-f6fb2635b838 CAGACAACAACAATCCAGTTC 0.478 21 64 ABCB10 23456 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 229683292 229683292 + Missense_Mutation SNP T T C TCGA-DB-A4XE-01A-11D-A27K-08 TCGA-DB-A4XE-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6998fda2-aab1-4175-8606-2df81e5e7114 d4e7fe64-d8f5-4696-8470-f6fb2635b838 CCTGAGCCCATCTGAGAGGTT 0.567 29 72 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-DB-A4XE-01A-11D-A27K-08 TCGA-DB-A4XE-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6998fda2-aab1-4175-8606-2df81e5e7114 d4e7fe64-d8f5-4696-8470-f6fb2635b838 ATAAGCATGACGACCTATGAT 0.393 39 35 ROBO2 6092 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 77617553 77617553 + Silent SNP C C T TCGA-DB-A4XE-01A-11D-A27K-08 TCGA-DB-A4XE-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6998fda2-aab1-4175-8606-2df81e5e7114 d4e7fe64-d8f5-4696-8470-f6fb2635b838 TCCAGTTGTGCTGACTCCCAC 0.468 40 76 ARHGAP31 57514 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 119132892 119132892 + Missense_Mutation SNP T T G TCGA-DB-A4XE-01A-11D-A27K-08 TCGA-DB-A4XE-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6998fda2-aab1-4175-8606-2df81e5e7114 d4e7fe64-d8f5-4696-8470-f6fb2635b838 GCCTTGTGGCTCCTTCCCTGC 0.602 50 153 GABRA6 2559 hgsc.bcm.edu;broad.mit.edu 37 5 161119014 161119014 + Silent SNP A A T TCGA-DB-A4XE-01A-11D-A27K-08 TCGA-DB-A4XE-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6998fda2-aab1-4175-8606-2df81e5e7114 d4e7fe64-d8f5-4696-8470-f6fb2635b838 CAAAAGTGTCATATGCCACTG 0.408 8 99 PDLIM7 9260 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 176918075 176918075 + Silent SNP C C T rs145886743 TCGA-DB-A4XE-01A-11D-A27K-08 TCGA-DB-A4XE-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6998fda2-aab1-4175-8606-2df81e5e7114 d4e7fe64-d8f5-4696-8470-f6fb2635b838 TCCCCGGCCGCGGCCGCCAGT 0.667 9 16 GLI3 2737 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 42007295 42007295 + Missense_Mutation SNP T T C TCGA-DB-A4XE-01A-11D-A27K-08 TCGA-DB-A4XE-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6998fda2-aab1-4175-8606-2df81e5e7114 d4e7fe64-d8f5-4696-8470-f6fb2635b838 TAGTTTTACGTGCTCCATCCA 0.498 85 251 SLC7A2 6542 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 17409358 17409358 + Silent SNP C C A TCGA-DB-A4XE-01A-11D-A27K-08 TCGA-DB-A4XE-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6998fda2-aab1-4175-8606-2df81e5e7114 d4e7fe64-d8f5-4696-8470-f6fb2635b838 ATTTTGGGGTCTCTGCAGCTT 0.438 43 96 GDAP1 54332 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 75272416 75272416 + Missense_Mutation SNP C C G TCGA-DB-A4XE-01A-11D-A27K-08 TCGA-DB-A4XE-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6998fda2-aab1-4175-8606-2df81e5e7114 d4e7fe64-d8f5-4696-8470-f6fb2635b838 CATGTATTACCCACGGGTACA 0.403 53 34 ZNF707 286075 hgsc.bcm.edu;broad.mit.edu 37 8 144776021 144776021 + Missense_Mutation SNP C C T TCGA-DB-A4XE-01A-11D-A27K-08 TCGA-DB-A4XE-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6998fda2-aab1-4175-8606-2df81e5e7114 d4e7fe64-d8f5-4696-8470-f6fb2635b838 GCCAAGCCCACGGCTTTCCCG 0.647 7 88 NLGN3 54413 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 70367670 70367670 + Missense_Mutation SNP T T A TCGA-DB-A4XE-01A-11D-A27K-08 TCGA-DB-A4XE-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6998fda2-aab1-4175-8606-2df81e5e7114 d4e7fe64-d8f5-4696-8470-f6fb2635b838 AGCCTGTGCCTCACCCTGTGG 0.662 16 22 NRK 203447 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 105178375 105178375 + Missense_Mutation SNP T T A TCGA-DB-A4XE-01A-11D-A27K-08 TCGA-DB-A4XE-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6998fda2-aab1-4175-8606-2df81e5e7114 d4e7fe64-d8f5-4696-8470-f6fb2635b838 TTTCTGCCAATCACTCATCTC 0.433 44 66 MAGEA12 4111 hgsc.bcm.edu;broad.mit.edu 37 X 151900225 151900225 + Missense_Mutation SNP G G T TCGA-DB-A4XE-01A-11D-A27K-08 TCGA-DB-A4XE-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6998fda2-aab1-4175-8606-2df81e5e7114 d4e7fe64-d8f5-4696-8470-f6fb2635b838 CGATCTGATTGTCGCCCAGCA 0.577 16 239 TP53 7157 broad.mit.edu;hgsc.bcm.edu 37 17 7579592 7579592 + Splice_Site DEL T T - TCGA-DB-A4XE-01A-11D-A27K-08 TCGA-DB-A4XE-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6998fda2-aab1-4175-8606-2df81e5e7114 d4e7fe64-d8f5-4696-8470-f6fb2635b838 CAAGGGGGACTGTAGATGGGT 0.597 170 212 ATRX 546 broad.mit.edu;hgsc.bcm.edu 37 X 76944338 76944339 + Frame_Shift_Del DEL GT GT - TCGA-DB-A4XE-01A-11D-A27K-08 TCGA-DB-A4XE-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6998fda2-aab1-4175-8606-2df81e5e7114 d4e7fe64-d8f5-4696-8470-f6fb2635b838 GCAATGAAGGGTGTCTATAAAT 0.391 31 90