Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count SCN4B 6330 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 118014578 118014578 + Missense_Mutation SNP C C T TCGA-DB-A4XF-01A-11D-A27K-08 TCGA-DB-A4XF-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a2ec49f6-9196-4883-a531-bdf8835be7a0 379dc17f-9fbe-4979-a612-eed92084b79d AAGATGGTGGCGTGGTGCTGG 0.547 25 37 DEPDC4 120863 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 100656178 100656178 + Nonsense_Mutation SNP A A C TCGA-DB-A4XF-01A-11D-A27K-08 TCGA-DB-A4XF-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a2ec49f6-9196-4883-a531-bdf8835be7a0 379dc17f-9fbe-4979-a612-eed92084b79d AAATCATTTCATATCCTGGTC 0.279 17 56 OR4Q3 441669 hgsc.bcm.edu;ucsc.edu 37 14 20215861 20215861 + Missense_Mutation SNP G G T TCGA-DB-A4XF-01A-11D-A27K-08 TCGA-DB-A4XF-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a2ec49f6-9196-4883-a531-bdf8835be7a0 379dc17f-9fbe-4979-a612-eed92084b79d CAGGGCAAGAGCATCTCTTTT 0.448 6 49 CCDC135 84229 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 57732851 57732851 + Missense_Mutation SNP C C T TCGA-DB-A4XF-01A-11D-A27K-08 TCGA-DB-A4XF-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a2ec49f6-9196-4883-a531-bdf8835be7a0 379dc17f-9fbe-4979-a612-eed92084b79d CTGCAGGTGGCAGACAACTTC 0.572 78 157 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7578271 7578271 + Missense_Mutation SNP T T C TCGA-DB-A4XF-01A-11D-A27K-08 TCGA-DB-A4XF-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a2ec49f6-9196-4883-a531-bdf8835be7a0 379dc17f-9fbe-4979-a612-eed92084b79d TCGGATAAGATGCTGAGGAGG 0.562 56 14 KRTAP17-1 83902 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 39471743 39471743 + Missense_Mutation SNP C C T TCGA-DB-A4XF-01A-11D-A27K-08 TCGA-DB-A4XF-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a2ec49f6-9196-4883-a531-bdf8835be7a0 379dc17f-9fbe-4979-a612-eed92084b79d caagacgatccgcagcagctg 0.697 11 9 EIF3I 8668 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 32688225 32688225 + Silent SNP G G A TCGA-DB-A4XF-01A-11D-A27K-08 TCGA-DB-A4XF-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a2ec49f6-9196-4883-a531-bdf8835be7a0 379dc17f-9fbe-4979-a612-eed92084b79d CTGTGGCCAAGGACCCTGTGA 0.587 43 81 ARHGAP29 9411 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 94655635 94655635 + Missense_Mutation SNP G G C TCGA-DB-A4XF-01A-11D-A27K-08 TCGA-DB-A4XF-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a2ec49f6-9196-4883-a531-bdf8835be7a0 379dc17f-9fbe-4979-a612-eed92084b79d GAGGTTAACTGTTACCTATGG 0.423 6 30 TANK 10010 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 162036208 162036208 + Missense_Mutation SNP C C T TCGA-DB-A4XF-01A-11D-A27K-08 TCGA-DB-A4XF-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a2ec49f6-9196-4883-a531-bdf8835be7a0 379dc17f-9fbe-4979-a612-eed92084b79d CTCAATAAAGCGTATGAAGCC 0.393 34 39 PRMT10 90826 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 148575687 148575687 + Missense_Mutation SNP A A G TCGA-DB-A4XF-01A-11D-A27K-08 TCGA-DB-A4XF-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a2ec49f6-9196-4883-a531-bdf8835be7a0 379dc17f-9fbe-4979-a612-eed92084b79d TACTTCCATCATCACATGGTC 0.358 21 49 MAML1 9794 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 179201423 179201423 + Missense_Mutation SNP T T C TCGA-DB-A4XF-01A-11D-A27K-08 TCGA-DB-A4XF-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a2ec49f6-9196-4883-a531-bdf8835be7a0 379dc17f-9fbe-4979-a612-eed92084b79d AGCCTCCAGTTTCCACATGCA 0.607 30 55 HLA-F 3134 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 29694761 29694761 + Missense_Mutation SNP A A G TCGA-DB-A4XF-01A-11D-A27K-08 TCGA-DB-A4XF-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a2ec49f6-9196-4883-a531-bdf8835be7a0 379dc17f-9fbe-4979-a612-eed92084b79d CCGGAGTCACAGTGTCTTGGG 0.512 71 99 CCIN 881 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 36170045 36170045 + Silent SNP C C A TCGA-DB-A4XF-01A-11D-A27K-08 TCGA-DB-A4XF-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a2ec49f6-9196-4883-a531-bdf8835be7a0 379dc17f-9fbe-4979-a612-eed92084b79d TCTTTGGCCGCCTGCTCCGTG 0.542 23 45 VSIG4 11326 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 65253352 65253352 + Missense_Mutation SNP C C T rs141882052 byFrequency TCGA-DB-A4XF-01A-11D-A27K-08 TCGA-DB-A4XF-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a2ec49f6-9196-4883-a531-bdf8835be7a0 379dc17f-9fbe-4979-a612-eed92084b79d TTATCTCTCACGACTTGGTTG 0.483 89 144 F8 2157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 154194745 154194745 + Silent SNP C C T TCGA-DB-A4XF-01A-11D-A27K-08 TCGA-DB-A4XF-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a2ec49f6-9196-4883-a531-bdf8835be7a0 379dc17f-9fbe-4979-a612-eed92084b79d CCCAGTCCTCCTCTTCAGCAG 0.453 22 45 CHMP1A 5119 broad.mit.edu;ucsc.edu 37 16 89713000 89713000 + Missense_Mutation SNP C C T TCGA-DB-A4XF-01A-11D-A27K-08 TCGA-DB-A4XF-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a2ec49f6-9196-4883-a531-bdf8835be7a0 379dc17f-9fbe-4979-a612-eed92084b79d CGCCCTCGGGCAGCTGGCTGA 0.677 7 11 IDH1 3417 broad.mit.edu;ucsc.edu 37 2 209113113 209113113 + Missense_Mutation SNP G G A rs121913499 TCGA-DB-A4XF-01A-11D-A27K-08 TCGA-DB-A4XF-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a2ec49f6-9196-4883-a531-bdf8835be7a0 379dc17f-9fbe-4979-a612-eed92084b79d TAAGCATGACGACCTATGATG 0.398 33 49 KIAA1161 57462 broad.mit.edu;ucsc.edu 37 9 34371509 34371509 + Missense_Mutation SNP C C T TCGA-DB-A4XF-01A-11D-A27K-08 TCGA-DB-A4XF-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a2ec49f6-9196-4883-a531-bdf8835be7a0 379dc17f-9fbe-4979-a612-eed92084b79d CGGCAGCGGCCGGTAGGTGCT 0.677 10 23 ZNF525 170958 broad.mit.edu;ucsc.edu 37 19 53884333 53884333 + Silent SNP T T C TCGA-DB-A4XF-01A-11D-A27K-08 TCGA-DB-A4XF-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a2ec49f6-9196-4883-a531-bdf8835be7a0 379dc17f-9fbe-4979-a612-eed92084b79d TGGAGAAGTCTATCAACGATG 0.363 58 81 TRIM55 84675 broad.mit.edu;ucsc.edu 37 8 67086746 67086746 + Missense_Mutation SNP C C T TCGA-DB-A4XF-01A-11D-A27K-08 TCGA-DB-A4XF-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a2ec49f6-9196-4883-a531-bdf8835be7a0 379dc17f-9fbe-4979-a612-eed92084b79d CAGGCTGCAGCTCCAGCGAGT 0.478 40 97 RAB3GAP2 25782 broad.mit.edu;hgsc.bcm.edu 37 1 220344243 220344245 + In_Frame_Del DEL CTT CTT - TCGA-DB-A4XF-01A-11D-A27K-08 TCGA-DB-A4XF-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a2ec49f6-9196-4883-a531-bdf8835be7a0 379dc17f-9fbe-4979-a612-eed92084b79d CCTTTTCCTCCTTCTAATAACTT 0.389 20 41 SRPRB 58477 broad.mit.edu;hgsc.bcm.edu 37 3 133525498 133525500 + In_Frame_Del DEL TTC TTC - TCGA-DB-A4XF-01A-11D-A27K-08 TCGA-DB-A4XF-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a2ec49f6-9196-4883-a531-bdf8835be7a0 379dc17f-9fbe-4979-a612-eed92084b79d CAGAGAGCTGTTCTTCTTGTTGG 0.399 20 52 CAND1 55832 broad.mit.edu;hgsc.bcm.edu 37 12 67704094 67704094 + Frame_Shift_Del DEL A A - TCGA-DB-A4XF-01A-11D-A27K-08 TCGA-DB-A4XF-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a2ec49f6-9196-4883-a531-bdf8835be7a0 379dc17f-9fbe-4979-a612-eed92084b79d TTATGATATTAAGGTAAGATG 0.328 21 26