Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count MYO3A 53904 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 26500781 26500781 + Missense_Mutation SNP G G A TCGA-DB-A4XH-01A-11D-A27K-08 TCGA-DB-A4XH-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 62718b87-e510-4dec-a3e5-9ea32d9fe53c 1ba5bcf8-0368-447b-918e-058cfb461883 GGTGCTGGGCGGCGGAGAGCC 0.662 14 48 F2 2147 hgsc.bcm.edu;broad.mit.edu 37 11 46747678 46747678 + Missense_Mutation SNP G G C TCGA-DB-A4XH-01A-11D-A27K-08 TCGA-DB-A4XH-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 62718b87-e510-4dec-a3e5-9ea32d9fe53c 1ba5bcf8-0368-447b-918e-058cfb461883 GTGCTATGTGGCCGGGAAGCC 0.597 7 137 ITPR2 3709 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 26639240 26639240 + Missense_Mutation SNP C C G TCGA-DB-A4XH-01A-11D-A27K-08 TCGA-DB-A4XH-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 62718b87-e510-4dec-a3e5-9ea32d9fe53c 1ba5bcf8-0368-447b-918e-058cfb461883 GCTGAAGAAGCTTCTGTTAAT 0.363 13 49 DCN 1634 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 91546926 91546926 + Silent SNP G G A TCGA-DB-A4XH-01A-11D-A27K-08 TCGA-DB-A4XH-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 62718b87-e510-4dec-a3e5-9ea32d9fe53c 1ba5bcf8-0368-447b-918e-058cfb461883 TGCTGATTTTGTTGCCATCAA 0.358 10 86 LATS2 26524 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 21563346 21563346 + Silent SNP G G A TCGA-DB-A4XH-01A-11D-A27K-08 TCGA-DB-A4XH-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 62718b87-e510-4dec-a3e5-9ea32d9fe53c 1ba5bcf8-0368-447b-918e-058cfb461883 TTGGGCCCTCGTAGGGGGTAC 0.687 12 116 RNF31 55072 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 24619440 24619440 + Missense_Mutation SNP G G T TCGA-DB-A4XH-01A-11D-A27K-08 TCGA-DB-A4XH-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 62718b87-e510-4dec-a3e5-9ea32d9fe53c 1ba5bcf8-0368-447b-918e-058cfb461883 GATCGGCCCCGAGGCTGTAAG 0.607 31 49 RNF31 55072 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 24619441 24619441 + Silent SNP A A T TCGA-DB-A4XH-01A-11D-A27K-08 TCGA-DB-A4XH-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 62718b87-e510-4dec-a3e5-9ea32d9fe53c 1ba5bcf8-0368-447b-918e-058cfb461883 ATCGGCCCCGAGGCTGTAAGG 0.607 31 51 TBPL2 387332 hgsc.bcm.edu;broad.mit.edu 37 14 55907119 55907119 + Missense_Mutation SNP C C T TCGA-DB-A4XH-01A-11D-A27K-08 TCGA-DB-A4XH-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 62718b87-e510-4dec-a3e5-9ea32d9fe53c 1ba5bcf8-0368-447b-918e-058cfb461883 CTCACCTGAGCGGCGCACTGG 0.622 7 123 ADCY9 115 hgsc.bcm.edu;broad.mit.edu 37 16 4016491 4016491 + Missense_Mutation SNP G G A TCGA-DB-A4XH-01A-11D-A27K-08 TCGA-DB-A4XH-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 62718b87-e510-4dec-a3e5-9ea32d9fe53c 1ba5bcf8-0368-447b-918e-058cfb461883 CCCTGACGCCGCCATGTACGT 0.622 8 126 PHKB 5257 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 47730353 47730353 + Missense_Mutation SNP C C A TCGA-DB-A4XH-01A-11D-A27K-08 TCGA-DB-A4XH-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 62718b87-e510-4dec-a3e5-9ea32d9fe53c 1ba5bcf8-0368-447b-918e-058cfb461883 GTTGAAGACACGTTGGGAAAT 0.408 15 67 NOD2 64127 hgsc.bcm.edu;ucsc.edu 37 16 50756571 50756571 + Missense_Mutation SNP C C A rs104895452 byFrequency TCGA-DB-A4XH-01A-11D-A27K-08 TCGA-DB-A4XH-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 62718b87-e510-4dec-a3e5-9ea32d9fe53c 1ba5bcf8-0368-447b-918e-058cfb461883 GGGGCCCAGGCCCTGGCTGAA 0.527 73 506 WDR7 23335 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 54446754 54446754 + Nonsense_Mutation SNP C C T TCGA-DB-A4XH-01A-11D-A27K-08 TCGA-DB-A4XH-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 62718b87-e510-4dec-a3e5-9ea32d9fe53c 1ba5bcf8-0368-447b-918e-058cfb461883 GATGCTGGCCCGAAGATGGCA 0.413 6 44 OR1M1 125963 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 9204546 9204546 + Missense_Mutation SNP C C T TCGA-DB-A4XH-01A-11D-A27K-08 TCGA-DB-A4XH-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 62718b87-e510-4dec-a3e5-9ea32d9fe53c 1ba5bcf8-0368-447b-918e-058cfb461883 GTGATAGCCACGCCCTTTGTC 0.567 52 78 HIPK4 147746 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 40895408 40895408 + Silent SNP G G A TCGA-DB-A4XH-01A-11D-A27K-08 TCGA-DB-A4XH-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 62718b87-e510-4dec-a3e5-9ea32d9fe53c 1ba5bcf8-0368-447b-918e-058cfb461883 TGAGATCAGCGTGGATGATAG 0.627 4 31 TAS1R2 80834 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 19168269 19168269 + Silent SNP G G A TCGA-DB-A4XH-01A-11D-A27K-08 TCGA-DB-A4XH-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 62718b87-e510-4dec-a3e5-9ea32d9fe53c 1ba5bcf8-0368-447b-918e-058cfb461883 CGATGCACTCGAAGCAGCAGA 0.597 25 43 ZP4 57829 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 238048465 238048465 + Splice_Site SNP C C T TCGA-DB-A4XH-01A-11D-A27K-08 TCGA-DB-A4XH-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 62718b87-e510-4dec-a3e5-9ea32d9fe53c 1ba5bcf8-0368-447b-918e-058cfb461883 AACATCCTACCGGTCCCCTGA 0.522 24 48 PAK7 57144 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 9561502 9561502 + Missense_Mutation SNP C C T TCGA-DB-A4XH-01A-11D-A27K-08 TCGA-DB-A4XH-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 62718b87-e510-4dec-a3e5-9ea32d9fe53c 1ba5bcf8-0368-447b-918e-058cfb461883 GAGCGAGTCACCGAGATGTTG 0.517 91 145 SRBD1 55133 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 45774700 45774700 + Missense_Mutation SNP C C T TCGA-DB-A4XH-01A-11D-A27K-08 TCGA-DB-A4XH-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 62718b87-e510-4dec-a3e5-9ea32d9fe53c 1ba5bcf8-0368-447b-918e-058cfb461883 CTCCGCCTCTCGGAAGCCTTG 0.333 26 32 VAMP5 10791 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 85818866 85818866 + Missense_Mutation SNP C C T TCGA-DB-A4XH-01A-11D-A27K-08 TCGA-DB-A4XH-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 62718b87-e510-4dec-a3e5-9ea32d9fe53c 1ba5bcf8-0368-447b-918e-058cfb461883 AGAGTTGGAGCGGTGCCAGCA 0.602 10 94 SLC9A2 6549 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 103281660 103281660 + Silent SNP G G A TCGA-DB-A4XH-01A-11D-A27K-08 TCGA-DB-A4XH-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 62718b87-e510-4dec-a3e5-9ea32d9fe53c 1ba5bcf8-0368-447b-918e-058cfb461883 GAATCGGTGGGGTGCTGATTG 0.443 61 73 CHRNA1 1134 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 175613522 175613522 + Missense_Mutation SNP A A G TCGA-DB-A4XH-01A-11D-A27K-08 TCGA-DB-A4XH-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 62718b87-e510-4dec-a3e5-9ea32d9fe53c 1ba5bcf8-0368-447b-918e-058cfb461883 GAAAAACATGATATTTGGGAT 0.348 30 31 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-DB-A4XH-01A-11D-A27K-08 TCGA-DB-A4XH-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 62718b87-e510-4dec-a3e5-9ea32d9fe53c 1ba5bcf8-0368-447b-918e-058cfb461883 ATAAGCATGACGACCTATGAT 0.393 28 40 TRANK1 9881 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 36874112 36874112 + Missense_Mutation SNP C C T TCGA-DB-A4XH-01A-11D-A27K-08 TCGA-DB-A4XH-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 62718b87-e510-4dec-a3e5-9ea32d9fe53c 1ba5bcf8-0368-447b-918e-058cfb461883 CCGGCGGTTGCGTGCGCTTTC 0.478 19 36 KLHL18 23276 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 47384261 47384261 + Missense_Mutation SNP G G A TCGA-DB-A4XH-01A-11D-A27K-08 TCGA-DB-A4XH-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 62718b87-e510-4dec-a3e5-9ea32d9fe53c 1ba5bcf8-0368-447b-918e-058cfb461883 TGGGGTTACAGTCTTTGAGGG 0.522 25 61 CELSR3 1951 hgsc.bcm.edu;broad.mit.edu 37 3 48690585 48690585 + Silent SNP C C T TCGA-DB-A4XH-01A-11D-A27K-08 TCGA-DB-A4XH-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 62718b87-e510-4dec-a3e5-9ea32d9fe53c 1ba5bcf8-0368-447b-918e-058cfb461883 GGCCCGAGCCCCTGGTCACTG 0.617 7 129 OR5H2 79310 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 98001915 98001915 + Missense_Mutation SNP A A G TCGA-DB-A4XH-01A-11D-A27K-08 TCGA-DB-A4XH-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 62718b87-e510-4dec-a3e5-9ea32d9fe53c 1ba5bcf8-0368-447b-918e-058cfb461883 ACAACTTCACATCCCCATGTA 0.413 120 214 ZBTB20 26137 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 114058129 114058129 + Missense_Mutation SNP T T C TCGA-DB-A4XH-01A-11D-A27K-08 TCGA-DB-A4XH-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 62718b87-e510-4dec-a3e5-9ea32d9fe53c 1ba5bcf8-0368-447b-918e-058cfb461883 CATGTGCACGTTGAGGGAGCT 0.527 107 142 NAT8L 339983 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 2065803 2065803 + Silent SNP C C G TCGA-DB-A4XH-01A-11D-A27K-08 TCGA-DB-A4XH-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 62718b87-e510-4dec-a3e5-9ea32d9fe53c 1ba5bcf8-0368-447b-918e-058cfb461883 CTGAGCGCCTCTTCTTCCAGG 0.711 15 23 OTOP1 133060 hgsc.bcm.edu;broad.mit.edu 37 4 4199453 4199453 + Missense_Mutation SNP G G A TCGA-DB-A4XH-01A-11D-A27K-08 TCGA-DB-A4XH-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 62718b87-e510-4dec-a3e5-9ea32d9fe53c 1ba5bcf8-0368-447b-918e-058cfb461883 CTGTAAATCCGGATTCCAGCC 0.582 6 86 SLC12A7 10723 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 1081825 1081825 + Silent SNP C C T rs138705098 TCGA-DB-A4XH-01A-11D-A27K-08 TCGA-DB-A4XH-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 62718b87-e510-4dec-a3e5-9ea32d9fe53c 1ba5bcf8-0368-447b-918e-058cfb461883 TCTCCACAAACGCCCCCGCGT 0.662 9 76 CDH6 1004 hgsc.bcm.edu;broad.mit.edu 37 5 31323107 31323107 + Nonsense_Mutation SNP C C T TCGA-DB-A4XH-01A-11D-A27K-08 TCGA-DB-A4XH-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 62718b87-e510-4dec-a3e5-9ea32d9fe53c 1ba5bcf8-0368-447b-918e-058cfb461883 CAACAAATTACGAAGGGACAT 0.502 6 59 TPST1 8460 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 65705779 65705779 + Missense_Mutation SNP C C T TCGA-DB-A4XH-01A-11D-A27K-08 TCGA-DB-A4XH-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 62718b87-e510-4dec-a3e5-9ea32d9fe53c 1ba5bcf8-0368-447b-918e-058cfb461883 AGAGAAGATCCGCCTGGATGA 0.512 31 48 COL27A1 85301 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 116931263 116931263 + Silent SNP C C T TCGA-DB-A4XH-01A-11D-A27K-08 TCGA-DB-A4XH-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 62718b87-e510-4dec-a3e5-9ea32d9fe53c 1ba5bcf8-0368-447b-918e-058cfb461883 CTGCCCGCACCAGCACCCACA 0.567 136 213 PPP1R3F 89801 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 49126932 49126932 + Silent SNP G G A TCGA-DB-A4XH-01A-11D-A27K-08 TCGA-DB-A4XH-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 62718b87-e510-4dec-a3e5-9ea32d9fe53c 1ba5bcf8-0368-447b-918e-058cfb461883 GCTACGTCCCGCGCAGCCCGC 0.706 21 24 ZNF280C 55609 hgsc.bcm.edu;broad.mit.edu 37 X 129354412 129354412 + Silent SNP A A G TCGA-DB-A4XH-01A-11D-A27K-08 TCGA-DB-A4XH-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 62718b87-e510-4dec-a3e5-9ea32d9fe53c 1ba5bcf8-0368-447b-918e-058cfb461883 TTGCTGGTCAAAAATTGTAGT 0.393 9 161 PLAC1 10761 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 133700590 133700590 + Silent SNP G G C TCGA-DB-A4XH-01A-11D-A27K-08 TCGA-DB-A4XH-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 62718b87-e510-4dec-a3e5-9ea32d9fe53c 1ba5bcf8-0368-447b-918e-058cfb461883 TTAGCATGAAGGGGTGCACTG 0.517 131 183 SPANXD 64648 hgsc.bcm.edu;broad.mit.edu 37 X 140785691 140785691 + Missense_Mutation SNP G G T TCGA-DB-A4XH-01A-11D-A27K-08 TCGA-DB-A4XH-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 62718b87-e510-4dec-a3e5-9ea32d9fe53c 1ba5bcf8-0368-447b-918e-058cfb461883 GGTTGATTCTGTTCTTTCGGG 0.443 25 362 PARP1 142 broad.mit.edu;ucsc.edu 37 1 226553702 226553702 + Missense_Mutation SNP T T C TCGA-DB-A4XH-01A-11D-A27K-08 TCGA-DB-A4XH-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 62718b87-e510-4dec-a3e5-9ea32d9fe53c 1ba5bcf8-0368-447b-918e-058cfb461883 GCATGAGTGTTCTTAACATAC 0.468 5 39 CDC5L 988 broad.mit.edu;ucsc.edu 37 6 44387260 44387260 + Missense_Mutation SNP G G C TCGA-DB-A4XH-01A-11D-A27K-08 TCGA-DB-A4XH-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 62718b87-e510-4dec-a3e5-9ea32d9fe53c 1ba5bcf8-0368-447b-918e-058cfb461883 CATTGCATGAGAGTGACTTCT 0.438 19 64 SMAD6 4091 broad.mit.edu;ucsc.edu 37 15 67073541 67073541 + Missense_Mutation SNP A A T TCGA-DB-A4XH-01A-11D-A27K-08 TCGA-DB-A4XH-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 62718b87-e510-4dec-a3e5-9ea32d9fe53c 1ba5bcf8-0368-447b-918e-058cfb461883 GCGCAGCAAGATCGGCTTCGG 0.672 4 37 TUBB1 81027 broad.mit.edu;ucsc.edu 37 20 57597953 57597953 + Silent SNP C C T rs150453159 byFrequency TCGA-DB-A4XH-01A-11D-A27K-08 TCGA-DB-A4XH-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 62718b87-e510-4dec-a3e5-9ea32d9fe53c 1ba5bcf8-0368-447b-918e-058cfb461883 GGAGCGACCGCGGGGCCTCGG 0.597 29 39 ANKRD30A 91074 broad.mit.edu;ucsc.edu 37 10 37430910 37430910 + Missense_Mutation SNP C C T TCGA-DB-A4XH-01A-11D-A27K-08 TCGA-DB-A4XH-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 62718b87-e510-4dec-a3e5-9ea32d9fe53c 1ba5bcf8-0368-447b-918e-058cfb461883 AGGGAAATTACGAGTCCTGCA 0.433 67 91 PIKFYVE 200576 broad.mit.edu;hgsc.bcm.edu 37 2 209200822 209200823 + In_Frame_Ins INS - - GTCTTC TCGA-DB-A4XH-01A-11D-A27K-08 TCGA-DB-A4XH-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 62718b87-e510-4dec-a3e5-9ea32d9fe53c 1ba5bcf8-0368-447b-918e-058cfb461883 GCAAGGCTCATGTCTTCCTCTG 0.441 21 84 SNX31 169166 broad.mit.edu;hgsc.bcm.edu 37 8 101589305 101589308 + Splice_Site DEL TAGA TAGA - TCGA-DB-A4XH-01A-11D-A27K-08 TCGA-DB-A4XH-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 62718b87-e510-4dec-a3e5-9ea32d9fe53c 1ba5bcf8-0368-447b-918e-058cfb461883 TTCAATCTGCTAGATAGATTAGTG 0.363 43 94 NDUFA3 4696 broad.mit.edu;hgsc.bcm.edu 37 19 54610132 54610135 + Frame_Shift_Del DEL GATG GATG - TCGA-DB-A4XH-01A-11D-A27K-08 TCGA-DB-A4XH-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx 62718b87-e510-4dec-a3e5-9ea32d9fe53c 1ba5bcf8-0368-447b-918e-058cfb461883 CGTCCGTGATGATGGGAACATGCC 0.642 11 6