Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count NELL1 4745 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 20907004 20907004 + Missense_Mutation SNP T T C TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 TATGAGCGTGTGATAGACCCT 0.433 20 33 CD44 960 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 35198139 35198139 + Missense_Mutation SNP C C T TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 TATAACCTGCCGCTTTGCAGG 0.433 19 33 RTN3 10313 hgsc.bcm.edu;broad.mit.edu 37 11 63487943 63487943 + Missense_Mutation SNP G G A TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 CCTGATAGCAGCCTTTACAGA 0.358 5 78 FERMT3 83706 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 63987951 63987951 + Missense_Mutation SNP C C T TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 CGCCTGGCCTCCAAAGGCCGC 0.682 8 28 PITPNM1 9600 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 67266176 67266176 + Missense_Mutation SNP C C T rs151117956 by1000genomes TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 GCCTCGAAGGCGGAGCTCAGC 0.662 61 95 INTS4 92105 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 77672047 77672047 + Silent SNP G G A TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 GGTCACTGAAGTAATCCCCTA 0.428 74 143 CHD4 1108 hgsc.bcm.edu;broad.mit.edu 37 12 6701875 6701875 + Missense_Mutation SNP G G A TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 AACCTCTCGGGGGTGAGAAAG 0.433 9 90 GCN1L1 10985 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 120594273 120594273 + Missense_Mutation SNP C C T TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 ACCCGGAGCACGGTTTCCCGC 0.577 17 66 B3GNT4 79369 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 122691360 122691360 + Missense_Mutation SNP G G A TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 GGACTTCACTGAGGACTTCTT 0.597 32 66 NCOR2 9612 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 124824906 124824906 + Missense_Mutation SNP G G A TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 TCCCGCTCCCGATCCCGGTCC 0.647 25 45 GJB6 10804 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 20797370 20797370 + Missense_Mutation SNP C C T TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 GGGGTGGAGACGAAGATCAGC 0.552 8 47 CCNB1IP1 57820 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 20779890 20779890 + Missense_Mutation SNP A A G TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 TGTATTATCCAAAGGAAACTT 0.388 37 48 RNASE8 122665 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 21526423 21526423 + Missense_Mutation SNP C C G TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 AAGAGAAGCACCTGAACACAC 0.537 27 189 METTL3 56339 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 21971990 21971990 + Silent SNP G G A TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 CACTACGGAAGGTTGGAGACA 0.473 12 105 AJUBA 84962 hgsc.bcm.edu;broad.mit.edu 37 14 23451447 23451447 + Missense_Mutation SNP C C T TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 CTCCAGCAGGCGACTGGCTTT 0.697 8 91 TRMT5 57570 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 61446302 61446302 + Missense_Mutation SNP A A C TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 TTTACTGACTATTTCTTTCCT 0.408 19 145 TRPM1 4308 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 31318363 31318363 + Missense_Mutation SNP C C T TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 GACCCGGATGCGCTCGTCGCT 0.632 8 69 CHAC1 79094 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 41247728 41247728 + Missense_Mutation SNP C C T TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 AAGGCATTGGCCTATGTGGCC 0.597 25 256 SEMA6D 80031 hgsc.bcm.edu;broad.mit.edu 37 15 48063381 48063381 + Missense_Mutation SNP A A G TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 CGTTCTGTTGATTCCAGAAAT 0.438 9 127 CA12 771 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 63637713 63637713 + Missense_Mutation SNP G G A TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 GGTGTGCTCAGAGCCGTGCGG 0.647 22 47 ZNF263 10127 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 3339765 3339765 + Missense_Mutation SNP G G A rs149007034 TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 GGGAACCCACGTTTCCTGTCA 0.493 54 94 CES2 8824 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 66974478 66974478 + Silent SNP G G A TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 CGGGTGGCACGAGTGTGTCTT 0.597 58 86 IRF8 3394 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 85952327 85952327 + Silent SNP C C T TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 GCAGCGGCAACGCCGTGGTGT 0.657 8 47 PRPF8 10594 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 1578465 1578465 + Missense_Mutation SNP T T C TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 GATGACGACGTTGTTCTTGGC 0.507 19 42 MYH4 4622 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 10368903 10368903 + Missense_Mutation SNP G G T TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 ACACAGAAGAGGCCCGAGTAG 0.552 17 153 DNAH9 1770 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 11593161 11593161 + Missense_Mutation SNP G G A TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 CAGTTTGCCCGGCATATCCGA 0.562 13 19 CSH2 1443 hgsc.bcm.edu;broad.mit.edu 37 17 61949673 61949673 + Missense_Mutation SNP T T A TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 GCGGCTGCCGTCTTCCAGCCT 0.557 19 174 SETBP1 26040 hgsc.bcm.edu;broad.mit.edu 37 18 42531834 42531834 + Silent SNP C C T TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 CACACCTGTGCGAGATTGGCT 0.552 7 72 MBD1 4152 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 47800597 47800597 + Missense_Mutation SNP G G A TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 CACTTCTGGCGCTTCTGGTTG 0.662 25 191 MRO 83876 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 48327796 48327796 + Missense_Mutation SNP A A T rs141296827 TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 CTGGTGAAAAATTTTTTCCAT 0.483 80 104 BSG 682 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 579583 579583 + Missense_Mutation SNP A A T TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 CACAGAGGTCACAGGGCACCG 0.632 9 89 MAN2B1 4125 hgsc.bcm.edu;broad.mit.edu 37 19 12763077 12763077 + Missense_Mutation SNP C C T rs148661421 TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 CCTATACTGGCGTTGTACCTG 0.592 7 111 CEP89 84902 hgsc.bcm.edu;broad.mit.edu 37 19 33444650 33444650 + Silent SNP C C T TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 CCCCATAGTCCAGTGTTTCAA 0.478 6 65 NLRP5 126206 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 56515215 56515215 + Missense_Mutation SNP C C A TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 CTACGGGCTGCAATGGTGTCT 0.418 9 65 ZBTB45 84878 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 59028371 59028371 + Missense_Mutation SNP C C T TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 CCGCCACCTTCGCCATCCTCG 0.662 60 383 PTCH2 8643 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 45291949 45291949 + Silent SNP G G A TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 TGAACTCAACGCCAATGCCTA 0.542 20 22 FUBP1 8880 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 78432436 78432436 + Splice_Site SNP C C T TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 CCACCACTGTCTACAATTTAA 0.318 9 15 HMCN1 83872 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 186092329 186092329 + Missense_Mutation SNP C C G TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 TCAAGCAGCACAAGCACCAAG 0.493 9 28 ABCB10 23456 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 229666080 229666080 + Missense_Mutation SNP C C T TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 CACCTCTGGGCGAGCTGGATA 0.458 54 193 CD93 22918 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 23065099 23065099 + Silent SNP G G A TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 GCTTTTGCCCGTCAGTGCCAT 0.617 45 107 VSTM2L 128434 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 36560093 36560093 + Missense_Mutation SNP A A G TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 GGACGTGGAGATGGCCTGCTC 0.632 47 239 PROKR1 10887 hgsc.bcm.edu;broad.mit.edu 37 2 68873234 68873234 + Missense_Mutation SNP G G A TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 AAGAAACTGCGCAACCTCACC 0.557 18 223 ADRA2B 151 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 96781415 96781415 + Silent SNP C C T TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 GGCGCCCGCGCGGCTGGGGGC 0.637 10 54 SLC5A7 60482 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 108604713 108604713 + Silent SNP C C T TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 ACAGTGGCAGCGCAGAAGAGC 0.502 31 78 SP3 6670 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 174777827 174777827 + Missense_Mutation SNP T T C TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 CCTCTGTAATTCATCACTTCG 0.378 14 50 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 ATAAGCATGACGACCTATGAT 0.393 21 48 TRIM71 131405 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 32932670 32932670 + Silent SNP C C T TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 GACCAGCCGGCGTGGCCTGTG 0.622 28 69 GTPBP8 29083 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 112709901 112709901 + Missense_Mutation SNP G G A TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 AATGCCTGCGGTGCTAGAGCG 0.607 41 39 RABL3 285282 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 120417392 120417392 + Missense_Mutation SNP T T A TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 GGTATTTGGTTATCAGCAAAC 0.363 81 175 PLD1 5337 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 171455769 171455769 + Missense_Mutation SNP T T A TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 AGATTTTCTATGATATTACTC 0.458 24 70 EPHA5 2044 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 66361141 66361141 + Missense_Mutation SNP C C A TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 AGACTCTCTCCTGAAATAATC 0.463 18 156 IRX2 153572 hgsc.bcm.edu;ucsc.edu 37 5 2749785 2749785 + Silent SNP C C T rs61742405 byFrequency TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 TGGCGTCCCGCGTGGCGTTCT 0.652 48 98 OSMR 9180 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 38923283 38923283 + Silent SNP C C T TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 GATATGACTTCAGAATTTATG 0.328 24 45 PCDHGA1 56114 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 140710720 140710720 + Missense_Mutation SNP G G T TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 ATTGCCTTTTGGGCAAGACCT 0.458 23 144 GCNT2 2651 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 10529180 10529180 + Silent SNP G G A rs142352495 by1000genomes TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 TTTTTAGCGCGTCTCTTATCT 0.388 14 106 TINAG 27283 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 54173456 54173456 + Silent SNP T T C TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 CTTATTTCACTAGGAATCACA 0.393 14 112 HOXA11 3207 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 27224590 27224590 + Silent SNP G G A TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 AGGTCACTTCGCGCACGGGTT 0.612 21 142 MUC17 140453 hgsc.bcm.edu;broad.mit.edu 37 7 100678887 100678887 + Missense_Mutation SNP C C T rs141608296 TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 GGAACCACTCCGTTAACAAGT 0.507 51 518 KCNB2 9312 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 73480218 73480218 + Silent SNP C C T TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 ATAATCTGAACGAGAACGAGT 0.517 34 70 GLIS3 169792 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 3898784 3898784 + Missense_Mutation SNP C C T TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 AGGGACTGCACGGTGAGGCAA 0.592 10 71 TAF1L 138474 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 32631823 32631823 + Missense_Mutation SNP C C T TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 CCGCTTAAGCCGCCTCAGTTG 0.448 15 77 TMC1 117531 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 75441910 75441910 + Splice_Site SNP T T C TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 TTGGTGATGGTGTATGTGCTT 0.473 39 274 MRPL50 54534 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 104160861 104160861 + Missense_Mutation SNP G G C TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 GCCCGACACAGATCGCGCCGC 0.547 14 106 NOTCH1 4851 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 139404348 139404348 + Missense_Mutation SNP C C A TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 CCCCGGAAGCCGGGCAGGCAG 0.647 79 113 REPS2 9185 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 17065569 17065569 + Nonsense_Mutation SNP C C T TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 CAATCAGTTCCGATCCCTTCA 0.488 78 154 NHS 4810 hgsc.bcm.edu;broad.mit.edu 37 X 17394316 17394316 + Missense_Mutation SNP G G A TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 GGCCCGGCACGCTTGCAGCCT 0.726 10 13 FAM47A 158724 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 34150160 34150160 + Missense_Mutation SNP G G A TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 AGATATTTTGGGGAGTAAAAA 0.532 45 107 USP9X 8239 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 41075260 41075260 + Missense_Mutation SNP G G A TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 CAAGTTCAATGATTATTTTGA 0.408 16 98 MORC4 79710 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 106224616 106224616 + Missense_Mutation SNP C C A TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 GAGGTAACACCGCCAGTCATT 0.353 12 139 PNMA3 29944 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 152226308 152226308 + Missense_Mutation SNP G G T TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 cgagtcttaagtggggccacc 0.502 12 80 ABLIM1 3983 broad.mit.edu;ucsc.edu 37 10 116199848 116199848 + Splice_Site SNP T T C TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 TACCTGGTAATCTGAAAAGGA 0.403 10 13 FCRLA 84824 broad.mit.edu;ucsc.edu 37 1 161681131 161681131 + Silent SNP C C T TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 TGGGTCCCCCCGGGCCTAACA 0.602 32 76 THEMIS2 9473 broad.mit.edu;ucsc.edu 37 1 28208811 28208811 + Missense_Mutation SNP C C T TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 CAAGCTGCGGCGGCGGCCAAG 0.677 5 19 KLK15 55554 broad.mit.edu;ucsc.edu 37 19 51330971 51330971 + Silent SNP G G A TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 TGAGGGAAGCGCCACAGTTAA 0.632 3 33 ZNF208 7757 broad.mit.edu;ucsc.edu 37 19 22155989 22155989 + Missense_Mutation SNP T T C TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 ACTAAAGGTTTTGCCACATTC 0.368 6 61 RPA1 6117 broad.mit.edu;ucsc.edu 37 17 1798390 1798390 + Splice_Site SNP G G A TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 GACCTACAACGTAAGTAAGGG 0.493 42 66 CIC 23152 broad.mit.edu;hgsc.bcm.edu 37 19 42793215 42793218 + Frame_Shift_Del DEL CAGT CAGT - TCGA-DB-A64L-01A-11D-A29Q-08 TCGA-DB-A64L-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx d76920e6-de91-44c6-a5ba-98d68160b97b 48f07e33-5a95-4c81-bc74-94f9238ae1c9 GAGAAGTAGACAGTCAGGCGCTAC 0.667 69 60