Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count SYT7 9066 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 61295549 61295549 + Missense_Mutation SNP C C T rs382505 TCGA-DB-A64P-01A-11D-A29Q-08 TCGA-DB-A64P-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5864a37b-dfec-475c-95f4-2426c8e2772c 0bb265d4-0ce6-4374-890c-3f9e096dab5e ATGATCTTCACGGTGAGCGTG 0.612 25 123 RAD52 5893 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 1023182 1023182 + Nonsense_Mutation SNP A A T TCGA-DB-A64P-01A-11D-A29Q-08 TCGA-DB-A64P-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5864a37b-dfec-475c-95f4-2426c8e2772c 0bb265d4-0ce6-4374-890c-3f9e096dab5e GTTCAAGGCTAATGTGTCAGA 0.522 17 104 TMEM132B 114795 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 125900205 125900205 + Missense_Mutation SNP G G A TCGA-DB-A64P-01A-11D-A29Q-08 TCGA-DB-A64P-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5864a37b-dfec-475c-95f4-2426c8e2772c 0bb265d4-0ce6-4374-890c-3f9e096dab5e ATGGGCCATCGCCCGGACACG 0.592 16 71 ITGAX 3687 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 31374553 31374553 + Missense_Mutation SNP C C T TCGA-DB-A64P-01A-11D-A29Q-08 TCGA-DB-A64P-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5864a37b-dfec-475c-95f4-2426c8e2772c 0bb265d4-0ce6-4374-890c-3f9e096dab5e CGCTTTGGGGCGGCTCTGACA 0.617 43 232 MUC16 94025 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 9082770 9082770 + Silent SNP A A G TCGA-DB-A64P-01A-11D-A29Q-08 TCGA-DB-A64P-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5864a37b-dfec-475c-95f4-2426c8e2772c 0bb265d4-0ce6-4374-890c-3f9e096dab5e TGCTGAAGAGAGTTGTGAGTT 0.493 26 98 CIC 23152 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 42791719 42791719 + Missense_Mutation SNP G G A TCGA-DB-A64P-01A-11D-A29Q-08 TCGA-DB-A64P-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5864a37b-dfec-475c-95f4-2426c8e2772c 0bb265d4-0ce6-4374-890c-3f9e096dab5e CACATCCGGCGGCCCATGAAT 0.627 27 65 NR5A2 2494 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 200017321 200017321 + Missense_Mutation SNP G G A TCGA-DB-A64P-01A-11D-A29Q-08 TCGA-DB-A64P-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5864a37b-dfec-475c-95f4-2426c8e2772c 0bb265d4-0ce6-4374-890c-3f9e096dab5e GACCGAATGCGTGGAGGAAGG 0.478 14 112 OR2G6 391211 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 248685210 248685210 + Missense_Mutation SNP A A T TCGA-DB-A64P-01A-11D-A29Q-08 TCGA-DB-A64P-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5864a37b-dfec-475c-95f4-2426c8e2772c 0bb265d4-0ce6-4374-890c-3f9e096dab5e ATGAATAAGAAAGACAAAACC 0.517 40 98 TPTE 7179 hgsc.bcm.edu;broad.mit.edu 37 21 10941933 10941933 + Missense_Mutation SNP T T C TCGA-DB-A64P-01A-11D-A29Q-08 TCGA-DB-A64P-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5864a37b-dfec-475c-95f4-2426c8e2772c 0bb265d4-0ce6-4374-890c-3f9e096dab5e ATAGAAAGACTGCCTTCCAGA 0.308 30 119 STON1 11037 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 48809142 48809142 + Missense_Mutation SNP C C A TCGA-DB-A64P-01A-11D-A29Q-08 TCGA-DB-A64P-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5864a37b-dfec-475c-95f4-2426c8e2772c 0bb265d4-0ce6-4374-890c-3f9e096dab5e TGCTTTTTAACCTTGAATGAC 0.373 52 85 ARHGEF4 50649 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 131797917 131797917 + Silent SNP C C A TCGA-DB-A64P-01A-11D-A29Q-08 TCGA-DB-A64P-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5864a37b-dfec-475c-95f4-2426c8e2772c 0bb265d4-0ce6-4374-890c-3f9e096dab5e TCGAGGACATCTACCGCTGCC 0.642 13 25 NEB 4703 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 152497171 152497171 + Missense_Mutation SNP T T C TCGA-DB-A64P-01A-11D-A29Q-08 TCGA-DB-A64P-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5864a37b-dfec-475c-95f4-2426c8e2772c 0bb265d4-0ce6-4374-890c-3f9e096dab5e TAGCCTTCTTTGTACTTGAAC 0.403 73 85 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-DB-A64P-01A-11D-A29Q-08 TCGA-DB-A64P-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5864a37b-dfec-475c-95f4-2426c8e2772c 0bb265d4-0ce6-4374-890c-3f9e096dab5e ATAAGCATGACGACCTATGAT 0.393 30 28 TLR9 54106 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 52257400 52257400 + Missense_Mutation SNP C C T rs141692865 byFrequency TCGA-DB-A64P-01A-11D-A29Q-08 TCGA-DB-A64P-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5864a37b-dfec-475c-95f4-2426c8e2772c 0bb265d4-0ce6-4374-890c-3f9e096dab5e GTCCAGCACTCGGAGGTTTCC 0.532 25 85 CXCL13 10563 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 78528958 78528958 + Missense_Mutation SNP C C T rs150188610 by1000genomes TCGA-DB-A64P-01A-11D-A29Q-08 TCGA-DB-A64P-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5864a37b-dfec-475c-95f4-2426c8e2772c 0bb265d4-0ce6-4374-890c-3f9e096dab5e AATCTTGCCCCGTGGGAATGG 0.383 13 60 KIAA1109 84162 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 123166209 123166209 + Nonsense_Mutation SNP C C T TCGA-DB-A64P-01A-11D-A29Q-08 TCGA-DB-A64P-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5864a37b-dfec-475c-95f4-2426c8e2772c 0bb265d4-0ce6-4374-890c-3f9e096dab5e TGCTAGTACCCGACATCCAGC 0.343 21 64 PCDHA5 56143 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 140201485 140201485 + Missense_Mutation SNP C C A TCGA-DB-A64P-01A-11D-A29Q-08 TCGA-DB-A64P-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5864a37b-dfec-475c-95f4-2426c8e2772c 0bb265d4-0ce6-4374-890c-3f9e096dab5e AAACACGGAACCTTCGTTGGC 0.677 24 106 FAT2 2196 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 150946296 150946296 + Missense_Mutation SNP G G A TCGA-DB-A64P-01A-11D-A29Q-08 TCGA-DB-A64P-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5864a37b-dfec-475c-95f4-2426c8e2772c 0bb265d4-0ce6-4374-890c-3f9e096dab5e CGGGCCAAGGGGGTGTTGATA 0.483 62 96 STEAP1 26872 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 89790617 89790617 + Missense_Mutation SNP T T A TCGA-DB-A64P-01A-11D-A29Q-08 TCGA-DB-A64P-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5864a37b-dfec-475c-95f4-2426c8e2772c 0bb265d4-0ce6-4374-890c-3f9e096dab5e GTTGCTAAACTGGGCATATCA 0.363 5 37 KLF14 136259 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 130418098 130418098 + Missense_Mutation SNP A A C TCGA-DB-A64P-01A-11D-A29Q-08 TCGA-DB-A64P-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5864a37b-dfec-475c-95f4-2426c8e2772c 0bb265d4-0ce6-4374-890c-3f9e096dab5e GGGCAGGAGAAGCGCTTCTCG 0.622 9 23 KDM5B 10765 broad.mit.edu;ucsc.edu 37 1 202719900 202719900 + Nonsense_Mutation SNP G G A TCGA-DB-A64P-01A-11D-A29Q-08 TCGA-DB-A64P-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5864a37b-dfec-475c-95f4-2426c8e2772c 0bb265d4-0ce6-4374-890c-3f9e096dab5e TGATTAGTTCGGTAAACCTAA 0.358 40 40 JUP 3728 broad.mit.edu;ucsc.edu 37 17 39914694 39914694 + Missense_Mutation SNP C C T TCGA-DB-A64P-01A-11D-A29Q-08 TCGA-DB-A64P-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5864a37b-dfec-475c-95f4-2426c8e2772c 0bb265d4-0ce6-4374-890c-3f9e096dab5e GATCTCCATGCGGTTCATGGG 0.622 35 65 RP11-248G5.8 0 broad.mit.edu;ucsc.edu 37 13 52742281 52742281 + RNA SNP A A C TCGA-DB-A64P-01A-11D-A29Q-08 TCGA-DB-A64P-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5864a37b-dfec-475c-95f4-2426c8e2772c 0bb265d4-0ce6-4374-890c-3f9e096dab5e AAGGGCTCAGAGAACTGACCC 0.522 8 31 LRRC37A2 474170 broad.mit.edu;hgsc.bcm.edu 37 17 44630803 44630812 + Frame_Shift_Del DEL AAGGATTCTC AAGGATTCTC - TCGA-DB-A64P-01A-11D-A29Q-08 TCGA-DB-A64P-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5864a37b-dfec-475c-95f4-2426c8e2772c 0bb265d4-0ce6-4374-890c-3f9e096dab5e GAAGATGAAGAAGGATTCTCAAGGTAAATA 0.395 22 89