Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count TEAD1 7003 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 12901386 12901386 + Silent SNP G G A TCGA-DB-A64Q-01A-11D-A29Q-08 TCGA-DB-A64Q-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx fb1dc195-0b41-4ff7-8364-7fdcb4a96521 62bd6123-d070-4bde-af89-8177daee0949 CAGGGGCGCCGGGGGTAAGTC 0.597 50 87 VRTN 55237 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 74825020 74825020 + Missense_Mutation SNP C C T TCGA-DB-A64Q-01A-11D-A29Q-08 TCGA-DB-A64Q-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx fb1dc195-0b41-4ff7-8364-7fdcb4a96521 62bd6123-d070-4bde-af89-8177daee0949 GAGGCGTCTGCGCAGGGCTGC 0.677 67 83 EML1 2009 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 100367314 100367314 + Missense_Mutation SNP C C G TCGA-DB-A64Q-01A-11D-A29Q-08 TCGA-DB-A64Q-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx fb1dc195-0b41-4ff7-8364-7fdcb4a96521 62bd6123-d070-4bde-af89-8177daee0949 ATTGAATACTCTCCACGTCAT 0.433 45 74 C17orf77 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 72588190 72588190 + Missense_Mutation SNP A A T TCGA-DB-A64Q-01A-11D-A29Q-08 TCGA-DB-A64Q-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx fb1dc195-0b41-4ff7-8364-7fdcb4a96521 62bd6123-d070-4bde-af89-8177daee0949 GCATGGATGGATGAATTGGCG 0.438 49 140 LLGL2 3993 hgsc.bcm.edu;broad.mit.edu 37 17 73570548 73570548 + Missense_Mutation SNP A A G TCGA-DB-A64Q-01A-11D-A29Q-08 TCGA-DB-A64Q-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx fb1dc195-0b41-4ff7-8364-7fdcb4a96521 62bd6123-d070-4bde-af89-8177daee0949 CCTGAAGGAAATCCAGAGCAC 0.697 4 7 PALM 5064 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 746735 746735 + Missense_Mutation SNP C C T TCGA-DB-A64Q-01A-11D-A29Q-08 TCGA-DB-A64Q-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx fb1dc195-0b41-4ff7-8364-7fdcb4a96521 62bd6123-d070-4bde-af89-8177daee0949 GAGAATCAGGCGGGGCCCGAG 0.672 15 11 CIC 23152 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 42799051 42799051 + Missense_Mutation SNP G G A TCGA-DB-A64Q-01A-11D-A29Q-08 TCGA-DB-A64Q-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx fb1dc195-0b41-4ff7-8364-7fdcb4a96521 62bd6123-d070-4bde-af89-8177daee0949 TTGAAGATCCGTGAGGTGCGC 0.627 62 27 FUBP1 8880 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 78429937 78429937 + Splice_Site SNP A A C TCGA-DB-A64Q-01A-11D-A29Q-08 TCGA-DB-A64Q-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx fb1dc195-0b41-4ff7-8364-7fdcb4a96521 62bd6123-d070-4bde-af89-8177daee0949 ATATGTACTCACCTGGCTTAA 0.333 18 13 DCAF6 55827 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 167956741 167956741 + Silent SNP T T C TCGA-DB-A64Q-01A-11D-A29Q-08 TCGA-DB-A64Q-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx fb1dc195-0b41-4ff7-8364-7fdcb4a96521 62bd6123-d070-4bde-af89-8177daee0949 AGATTATGACTGTACCCAATG 0.358 7 43 KIDINS220 57498 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 8872066 8872066 + Missense_Mutation SNP T T C TCGA-DB-A64Q-01A-11D-A29Q-08 TCGA-DB-A64Q-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx fb1dc195-0b41-4ff7-8364-7fdcb4a96521 62bd6123-d070-4bde-af89-8177daee0949 AATACTGGAATCCTGGGAATT 0.388 45 70 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-DB-A64Q-01A-11D-A29Q-08 TCGA-DB-A64Q-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx fb1dc195-0b41-4ff7-8364-7fdcb4a96521 62bd6123-d070-4bde-af89-8177daee0949 ATAAGCATGACGACCTATGAT 0.393 27 40 POLQ 10721 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 121186388 121186388 + Silent SNP T T A TCGA-DB-A64Q-01A-11D-A29Q-08 TCGA-DB-A64Q-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx fb1dc195-0b41-4ff7-8364-7fdcb4a96521 62bd6123-d070-4bde-af89-8177daee0949 CAAAGGCATGTCGCATGCTAA 0.443 15 21 XRN1 54464 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 142136035 142136035 + Silent SNP C C T TCGA-DB-A64Q-01A-11D-A29Q-08 TCGA-DB-A64Q-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx fb1dc195-0b41-4ff7-8364-7fdcb4a96521 62bd6123-d070-4bde-af89-8177daee0949 ACTGTATTGCCTGAACATAAC 0.348 28 53 PIK3CA 5290 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 178936091 178936091 + Missense_Mutation SNP G G A rs104886003 TCGA-DB-A64Q-01A-11D-A29Q-08 TCGA-DB-A64Q-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx fb1dc195-0b41-4ff7-8364-7fdcb4a96521 62bd6123-d070-4bde-af89-8177daee0949 TGAAATCACTGAGCAGGAGAA 0.353 8 23 HSPA4L 22824 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 128739562 128739562 + Missense_Mutation SNP G G A TCGA-DB-A64Q-01A-11D-A29Q-08 TCGA-DB-A64Q-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx fb1dc195-0b41-4ff7-8364-7fdcb4a96521 62bd6123-d070-4bde-af89-8177daee0949 GATCATACAGGAGCCAAAACA 0.313 30 47 ENPP1 5167 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 132198210 132198210 + Missense_Mutation SNP C C T TCGA-DB-A64Q-01A-11D-A29Q-08 TCGA-DB-A64Q-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx fb1dc195-0b41-4ff7-8364-7fdcb4a96521 62bd6123-d070-4bde-af89-8177daee0949 CCTGTTTATACGCCAAAGCAT 0.448 15 14 GLT6D1 360203 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 138516117 138516117 + Silent SNP C C T TCGA-DB-A64Q-01A-11D-A29Q-08 TCGA-DB-A64Q-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx fb1dc195-0b41-4ff7-8364-7fdcb4a96521 62bd6123-d070-4bde-af89-8177daee0949 CCTGTCCAAACGGGATGCAAG 0.493 50 86 ITIH6 347365 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 54777673 54777673 + Missense_Mutation SNP A A G TCGA-DB-A64Q-01A-11D-A29Q-08 TCGA-DB-A64Q-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx fb1dc195-0b41-4ff7-8364-7fdcb4a96521 62bd6123-d070-4bde-af89-8177daee0949 CCTCGCAAAGATATAGAACTG 0.592 36 50 TREML2 79865 broad.mit.edu;ucsc.edu 37 6 41165879 41165879 + Missense_Mutation SNP G G A TCGA-DB-A64Q-01A-11D-A29Q-08 TCGA-DB-A64Q-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx fb1dc195-0b41-4ff7-8364-7fdcb4a96521 62bd6123-d070-4bde-af89-8177daee0949 GCCCATCAAGGGGTACAGGAT 0.612 6 52 RGAG4 340526 broad.mit.edu;hgsc.bcm.edu 37 X 71351107 71351107 + Frame_Shift_Del DEL T T - TCGA-DB-A64Q-01A-11D-A29Q-08 TCGA-DB-A64Q-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx fb1dc195-0b41-4ff7-8364-7fdcb4a96521 62bd6123-d070-4bde-af89-8177daee0949 ACAGTCGGGCTCCGCGCGTGG 0.647 28 24