Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count ABCC9 10060 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 22012589 22012589 + Silent SNP C C A TCGA-DB-A64V-01A-11D-A29Q-08 TCGA-DB-A64V-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cbd199b2-da43-4864-a647-3c36b2034f00 4047e4fc-39cc-4c30-bec3-fc4dffdf607c GTCCCCCACTCAGGTTGATGC 0.383 20 159 SART3 9733 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 108938934 108938934 + Missense_Mutation SNP G G A TCGA-DB-A64V-01A-11D-A29Q-08 TCGA-DB-A64V-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cbd199b2-da43-4864-a647-3c36b2034f00 4047e4fc-39cc-4c30-bec3-fc4dffdf607c TTCCACAATCGCACTTTCAAA 0.493 62 229 SNX20 124460 hgsc.bcm.edu;broad.mit.edu 37 16 50707432 50707432 + Missense_Mutation SNP G G A TCGA-DB-A64V-01A-11D-A29Q-08 TCGA-DB-A64V-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cbd199b2-da43-4864-a647-3c36b2034f00 4047e4fc-39cc-4c30-bec3-fc4dffdf607c CTTGCCCAGCGCGTAGGCCAG 0.697 6 81 GJC1 10052 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 42882004 42882004 + Silent SNP G G A TCGA-DB-A64V-01A-11D-A29Q-08 TCGA-DB-A64V-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cbd199b2-da43-4864-a647-3c36b2034f00 4047e4fc-39cc-4c30-bec3-fc4dffdf607c ATTAAATCCAGACGGAGGTCT 0.488 16 134 HAUS1 115106 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 43700024 43700024 + Silent SNP A A G TCGA-DB-A64V-01A-11D-A29Q-08 TCGA-DB-A64V-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cbd199b2-da43-4864-a647-3c36b2034f00 4047e4fc-39cc-4c30-bec3-fc4dffdf607c AATGTCTACAAGAGTAAGTAA 0.294 7 19 NACC1 112939 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 13248162 13248162 + Missense_Mutation SNP C C G TCGA-DB-A64V-01A-11D-A29Q-08 TCGA-DB-A64V-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cbd199b2-da43-4864-a647-3c36b2034f00 4047e4fc-39cc-4c30-bec3-fc4dffdf607c GGTCCTACTGCGGCGGCTCCT 0.647 9 94 ZNF85 7639 hgsc.bcm.edu;ucsc.edu 37 19 21132211 21132211 + Silent SNP A A G rs11665995 byFrequency TCGA-DB-A64V-01A-11D-A29Q-08 TCGA-DB-A64V-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cbd199b2-da43-4864-a647-3c36b2034f00 4047e4fc-39cc-4c30-bec3-fc4dffdf607c CTTTTAACCGATCTTCAACCC 0.363 6 30 CIC 23152 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 42791802 42791802 + Missense_Mutation SNP G G A TCGA-DB-A64V-01A-11D-A29Q-08 TCGA-DB-A64V-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cbd199b2-da43-4864-a647-3c36b2034f00 4047e4fc-39cc-4c30-bec3-fc4dffdf607c CAACCGGACCGTCAGCAAGAT 0.617 11 69 HIVEP3 59269 hgsc.bcm.edu;broad.mit.edu 37 1 42046935 42046935 + Missense_Mutation SNP C C T TCGA-DB-A64V-01A-11D-A29Q-08 TCGA-DB-A64V-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cbd199b2-da43-4864-a647-3c36b2034f00 4047e4fc-39cc-4c30-bec3-fc4dffdf607c GAAGTGGGGGCATGGAGTATG 0.577 7 126 OR10X1 128367 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 158548933 158548933 + Missense_Mutation SNP C C T TCGA-DB-A64V-01A-11D-A29Q-08 TCGA-DB-A64V-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cbd199b2-da43-4864-a647-3c36b2034f00 4047e4fc-39cc-4c30-bec3-fc4dffdf607c GTGGTGAAGGCCTTCTGCTTG 0.483 20 136 ATP9A 10079 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 50312662 50312662 + Missense_Mutation SNP T T C TCGA-DB-A64V-01A-11D-A29Q-08 TCGA-DB-A64V-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cbd199b2-da43-4864-a647-3c36b2034f00 4047e4fc-39cc-4c30-bec3-fc4dffdf607c AGGAAGATCATGTCGGCAGGG 0.448 7 47 UBASH3A 53347 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 21 43833168 43833168 + Silent SNP G G A rs141710800 TCGA-DB-A64V-01A-11D-A29Q-08 TCGA-DB-A64V-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cbd199b2-da43-4864-a647-3c36b2034f00 4047e4fc-39cc-4c30-bec3-fc4dffdf607c TGTACGAGGCGCTGAAGAGAG 0.547 21 207 EP300 2033 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 41566476 41566476 + Silent SNP T T C TCGA-DB-A64V-01A-11D-A29Q-08 TCGA-DB-A64V-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cbd199b2-da43-4864-a647-3c36b2034f00 4047e4fc-39cc-4c30-bec3-fc4dffdf607c TCCATTGCCATCCTCCTGACC 0.428 10 66 SNRNP200 23020 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 96956065 96956065 + Splice_Site SNP T T C TCGA-DB-A64V-01A-11D-A29Q-08 TCGA-DB-A64V-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cbd199b2-da43-4864-a647-3c36b2034f00 4047e4fc-39cc-4c30-bec3-fc4dffdf607c CTCCCCTACCTTGGCATTCTG 0.532 18 145 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-DB-A64V-01A-11D-A29Q-08 TCGA-DB-A64V-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cbd199b2-da43-4864-a647-3c36b2034f00 4047e4fc-39cc-4c30-bec3-fc4dffdf607c ATAAGCATGACGACCTATGAT 0.393 19 45 PIKFYVE 200576 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209169012 209169012 + Missense_Mutation SNP A A G TCGA-DB-A64V-01A-11D-A29Q-08 TCGA-DB-A64V-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cbd199b2-da43-4864-a647-3c36b2034f00 4047e4fc-39cc-4c30-bec3-fc4dffdf607c CACAGAACAGATAGCTGAAGA 0.403 18 57 ZBTB20 26137 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 114058203 114058203 + Missense_Mutation SNP C C G TCGA-DB-A64V-01A-11D-A29Q-08 TCGA-DB-A64V-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cbd199b2-da43-4864-a647-3c36b2034f00 4047e4fc-39cc-4c30-bec3-fc4dffdf607c TGTGTGTCACCATGTGCTTGA 0.537 27 80 PIK3CA 5290 hgsc.bcm.edu;broad.mit.edu 37 3 178928079 178928079 + Missense_Mutation SNP G G A TCGA-DB-A64V-01A-11D-A29Q-08 TCGA-DB-A64V-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cbd199b2-da43-4864-a647-3c36b2034f00 4047e4fc-39cc-4c30-bec3-fc4dffdf607c TCATGGATTAGAAGATTTGCT 0.348 7 68 USP53 54532 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 120192691 120192691 + Missense_Mutation SNP A A G TCGA-DB-A64V-01A-11D-A29Q-08 TCGA-DB-A64V-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cbd199b2-da43-4864-a647-3c36b2034f00 4047e4fc-39cc-4c30-bec3-fc4dffdf607c ACTGGATATGACACAGACAGC 0.423 11 81 TAS2R1 50834 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 9630017 9630017 + Missense_Mutation SNP G G A rs2234231 byFrequency TCGA-DB-A64V-01A-11D-A29Q-08 TCGA-DB-A64V-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cbd199b2-da43-4864-a647-3c36b2034f00 4047e4fc-39cc-4c30-bec3-fc4dffdf607c GAGATCCAGCGGAGCCATTTT 0.378 22 75 PCDHGC5 56097 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 140871058 140871058 + Missense_Mutation SNP G G A TCGA-DB-A64V-01A-11D-A29Q-08 TCGA-DB-A64V-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cbd199b2-da43-4864-a647-3c36b2034f00 4047e4fc-39cc-4c30-bec3-fc4dffdf607c CAACCTGCAGGTGAGCTCGGA 0.652 7 61 DOCK2 1794 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 169435568 169435568 + Missense_Mutation SNP T T C rs145444170 byFrequency TCGA-DB-A64V-01A-11D-A29Q-08 TCGA-DB-A64V-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cbd199b2-da43-4864-a647-3c36b2034f00 4047e4fc-39cc-4c30-bec3-fc4dffdf607c CTGGAGCAGTTCTCACACGCC 0.448 7 65 CNGB3 54714 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 87656896 87656896 + Missense_Mutation SNP A A G TCGA-DB-A64V-01A-11D-A29Q-08 TCGA-DB-A64V-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cbd199b2-da43-4864-a647-3c36b2034f00 4047e4fc-39cc-4c30-bec3-fc4dffdf607c TGATGATTAAATTCAAAAAAT 0.274 7 14 BICD2 23299 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 95481529 95481529 + Silent SNP C C T TCGA-DB-A64V-01A-11D-A29Q-08 TCGA-DB-A64V-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cbd199b2-da43-4864-a647-3c36b2034f00 4047e4fc-39cc-4c30-bec3-fc4dffdf607c CCTCGGCGTGCTGGGCCTCAC 0.667 20 40 BEND2 139105 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 18183208 18183208 + Missense_Mutation SNP G G A TCGA-DB-A64V-01A-11D-A29Q-08 TCGA-DB-A64V-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cbd199b2-da43-4864-a647-3c36b2034f00 4047e4fc-39cc-4c30-bec3-fc4dffdf607c TGCTGGAAGCGACTGAGACCT 0.557 16 90 NEUROG3 50674 broad.mit.edu;ucsc.edu 37 10 71332578 71332578 + Missense_Mutation SNP C C G TCGA-DB-A64V-01A-11D-A29Q-08 TCGA-DB-A64V-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cbd199b2-da43-4864-a647-3c36b2034f00 4047e4fc-39cc-4c30-bec3-fc4dffdf607c TCAGTGCCAACTCGCTCTTAG 0.692 3 18 FUBP1 8880 broad.mit.edu 37 1 78430553 78430553 + Splice_Site SNP A A G TCGA-DB-A64V-01A-11D-A29Q-08 TCGA-DB-A64V-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx cbd199b2-da43-4864-a647-3c36b2034f00 4047e4fc-39cc-4c30-bec3-fc4dffdf607c AGTTAAGTTTACTTGAACTTT 0.368 5 46